View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16554_low_19 (Length: 565)
Name: NF16554_low_19
Description: NF16554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16554_low_19 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 113; Significance: 6e-57; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 6 - 122
Target Start/End: Original strand, 5830315 - 5830431
Alignment:
| Q |
6 |
agtgatatgaaatacaatcctcattaaaatttaaagagaaaataatgtagcctgaataataaattgtatgaagaaatataaatgtctaaagaagaaagat |
105 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5830315 |
agtgatatgaaatacaatcctcattaaaattgaaagagaaaataatgtagcctgaataataaattgtatgaagaaatataaatgtctaaagaagaaagat |
5830414 |
T |
|
| Q |
106 |
taaacttatgataatat |
122 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
5830415 |
taaacttatgataatat |
5830431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 67 - 108
Target Start/End: Original strand, 29084721 - 29084762
Alignment:
| Q |
67 |
aattgtatgaagaaatataaatgtctaaagaagaaagattaa |
108 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
29084721 |
aattgtatgaagaaatataaatttctaaagaagaaagattaa |
29084762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 458 - 548
Target Start/End: Original strand, 14088364 - 14088454
Alignment:
| Q |
458 |
aatcgcactttgactatcacacctcattttcacacattcctgttgaatacctaaatcatctcgaagacctctcatccacaatgcttccttt |
548 |
Q |
| |
|
|||||||||||||||||||||| ||| |||||| ||| || || ||| |||||| || |||||||||||| |||||||||||||||| |
|
|
| T |
14088364 |
aatcgcactttgactatcacacatcagactcacacgttcttgcgtaacacccaaatcacctagaagacctctcagccacaatgcttccttt |
14088454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 458 - 548
Target Start/End: Complemental strand, 33698331 - 33698241
Alignment:
| Q |
458 |
aatcgcactttgactatcacacctcattttcacacattcctgttgaatacctaaatcatctcgaagacctctcatccacaatgcttccttt |
548 |
Q |
| |
|
|||||||||||||||||||||| ||| |||||| ||| || || ||| |||||| || |||||||||||| |||||||||||||||| |
|
|
| T |
33698331 |
aatcgcactttgactatcacacatcagactcacacgttcttgcgtaacacccaaatcacctagaagacctctcagccacaatgcttccttt |
33698241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 458 - 548
Target Start/End: Original strand, 24877094 - 24877184
Alignment:
| Q |
458 |
aatcgcactttgactatcacacctcattttcacacattcctgttgaatacctaaatcatctcgaagacctctcatccacaatgcttccttt |
548 |
Q |
| |
|
|||||||||||||||||||||| ||| |||||| ||| || || ||| |||||| || |||||||||||| ||||||| |||||||| |
|
|
| T |
24877094 |
aatcgcactttgactatcacacatcagactcacacgttcttgcgtaacacccaaatcacctagaagacctctcagccacaatacttccttt |
24877184 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 240 - 269
Target Start/End: Complemental strand, 9955080 - 9955051
Alignment:
| Q |
240 |
cacaattctccacctcgttcataatttgaa |
269 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
9955080 |
cacaattctccacctcgttcataatttgaa |
9955051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University