View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16554_low_20 (Length: 538)
Name: NF16554_low_20
Description: NF16554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16554_low_20 |
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Alignment Details
Target: chr3 (Bit Score: 303; Significance: 1e-170; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 15 - 333
Target Start/End: Original strand, 39812693 - 39813011
Alignment:
| Q |
15 |
aacatcaacaatcaatttactattcaagtgtaccatagcccgtagggtagttcttggagaggcttctggtatggagttgttatcaatggtgaatctagct |
114 |
Q |
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| T |
39812693 |
aacattaacaatcaatttactattcaagtgtaccatagcccgtagggtagttcttggagaggcttctggtatggagttgttatcaatggtgaatctagct |
39812792 |
T |
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| Q |
115 |
gggcaaaagaacaaatgataaaaacttgatgaaggaaaagataaatgagaaatgataagcgcgagaaaggatttttgagcactagaatttgttgtcaaac |
214 |
Q |
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| T |
39812793 |
gggcaaaagaacaaatgataaaaacttgatgaaggaaaagataaatgagaaatgataagcgcgagaaaggatttttgagcactagaatttgttgtcgaac |
39812892 |
T |
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| Q |
215 |
ttaaaagttagttgagtattcaactattagttctcaataatgattttatttgttctcaacgtgattgcattgaggtatgaaaattgtccttcatttgtga |
314 |
Q |
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| T |
39812893 |
ttaaaagttactcgagtattcaactattagttctcaataatgattttatttgttctcaacgtgattgcattgaggtatgaaaattgtccttcatttgtga |
39812992 |
T |
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| Q |
315 |
gagtttctctagagaatgt |
333 |
Q |
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| T |
39812993 |
gagtttctctagagaatgt |
39813011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 409 - 531
Target Start/End: Original strand, 39813087 - 39813209
Alignment:
| Q |
409 |
tgtgaggaaattttgttgtttgattgattatgtttaaaatgaaatttacaagtggtgtttattgacaagtgtttcgtgcgaacttgagcgttactctaca |
508 |
Q |
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| T |
39813087 |
tgtgaggaaattttgttgtttgattgattatgtttaaaatgaaatttacaagtggtgtttatagacaagtgtttcgtgcgaacttgagcgttactctaca |
39813186 |
T |
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| Q |
509 |
cacgtgacatgtcatatcctttg |
531 |
Q |
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| T |
39813187 |
cacgtgacatgtcatatcctttg |
39813209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 37 - 240
Target Start/End: Original strand, 39815232 - 39815431
Alignment:
| Q |
37 |
ttcaagtgtaccatagcccgtagggtagttcttggagaggcttctggtatggagttgttatcaatggtgaatctagctgggcaaaagaacaaatgataaa |
136 |
Q |
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| T |
39815232 |
ttcaagtgtaccatagcccgcagggtagttcta----aagcttctggcatggagttgttatcaatggtgaatccagtcgggcaagagaacaaatgataaa |
39815327 |
T |
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| Q |
137 |
aacttgatgaaggaaaagataaatgagaaatgataagcgcgagaaaggatttttgagcactagaatttgttgtcaaacttaaaagttagttgagtattca |
236 |
Q |
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| T |
39815328 |
aacttgatgaaggaaaatataaatgagaaatgataagcatgacaaaggattttttataactagaatttgttgtcgaacttaaaagttaatggagtattca |
39815427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 409 - 483
Target Start/End: Original strand, 39815650 - 39815724
Alignment:
| Q |
409 |
tgtgaggaaattttgttgtttgattgattatgtttaaaatgaaatttacaagtggtgtttattgacaagtgtttc |
483 |
Q |
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| T |
39815650 |
tgtgaggaaattttgttgtttgattgattatgcttaaaatgaaatttacaactggtgtttataaacaattgtttc |
39815724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 247 - 333
Target Start/End: Original strand, 39815491 - 39815578
Alignment:
| Q |
247 |
ctcaataatgattttatttgttctcaacgtgattgcattgaggtatgaa-aattgtccttcatttgtgagagtttctctagagaatgt |
333 |
Q |
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| T |
39815491 |
ctcaatagtgattttatttgttctcaacgtgattaccttgaggaatgaactattgtccttcacttgcgagagtttatctagagaatgt |
39815578 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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