View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16554_low_22 (Length: 510)
Name: NF16554_low_22
Description: NF16554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16554_low_22 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 491; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 491; E-Value: 0
Query Start/End: Original strand, 8 - 510
Target Start/End: Complemental strand, 52807359 - 52806857
Alignment:
| Q |
8 |
gagtgagaagaactataaagaaagcagtgaggcatagttattgttatttctaaagcctgtttactagagctctttcattctctctcactcattgaaactc |
107 |
Q |
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| T |
52807359 |
gagtgacaagaactataaagaaagcagtgaggcatagttattgttatttctaaagcctgtttactagagctctttcattctctctcactcattgaaactc |
52807260 |
T |
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| Q |
108 |
tttaagctagttccacgtttctttgatagaaaaacaaaagagagtaactaaactaaactagcttccaaagacaaagagggaagtgtatagggggtgtgta |
207 |
Q |
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| T |
52807259 |
tttaagctagttccacgtttctttgatagaaaaacaaaagagagtaactaaactaaactagcttccaaagacaaagagggaagtgtatagggggtgtgta |
52807160 |
T |
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| Q |
208 |
tatatcaagtgatgcgctcaggaggttgtgcattgcagcagaccctcacagcagaggctgcttcagttttgaagcattctcttgtgttggctagaaggcg |
307 |
Q |
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| T |
52807159 |
tatatcaagtgatgcgctcaggaggttgtgcattgcagcagaccctcacagcagaggctgcttcagttttgaagcattctcttgtgttggctagaaggcg |
52807060 |
T |
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| Q |
308 |
aggtcatccacaagtcactcctctacatgtagccatcactttacttaccttaagactaagttccttcaaaagagcttgtcttaagtctcatcagcctcac |
407 |
Q |
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| T |
52807059 |
aggtcatccacaagtcactcctctacatgtagccatcactttacttaccttaagactaagttccttcaaaagggcttgtcttaagtctcatcagcctcac |
52806960 |
T |
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| Q |
408 |
catcaaacttcacaacatccacttcaatctagagctcttgagctttgtttcaatgtagctcttaataggttaccaacaacaccttctcctttgattcact |
507 |
Q |
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| T |
52806959 |
catcaaacttcacaacatccacttcaatctagggctcttgagctttgtttcaatgtagctcttaataggttaccaacaacaccttctcctttgattcact |
52806860 |
T |
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| Q |
508 |
ctc |
510 |
Q |
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| T |
52806859 |
ctc |
52806857 |
T |
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Back To:
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Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 423 - 475
Target Start/End: Original strand, 16611234 - 16611286
Alignment:
| Q |
423 |
catccacttcaatctagagctcttgagctttgtttcaatgtagctcttaatag |
475 |
Q |
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| T |
16611234 |
catcctcttcaatgtagagctcttgaactttgcttcaatgttgctcttaatag |
16611286 |
T |
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