View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16554_low_25 (Length: 506)
Name: NF16554_low_25
Description: NF16554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16554_low_25 |
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Alignment Details
Target: chr7 (Bit Score: 414; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 10 - 490
Target Start/End: Complemental strand, 38322532 - 38322055
Alignment:
| Q |
10 |
ggaggagcagagatcatgcccttttttgcaatgcagaacgcgtctgacaaggaactacatggctgtaacagaannnnnnnataaaataaaaaggtaaaac |
109 |
Q |
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| T |
38322532 |
ggagcagcagagatcatgcccttttttgcaatgcagaacgcgtctgacaaggaactacatggctgtaacagagtttttttataaaataaaaaggtaaaac |
38322433 |
T |
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| Q |
110 |
tatgaaaattcttgtgtcgagagaaacaactcgacttctctgggtgtatgggatacaatgaaaaatcaagagaaaactaataaggtaaatgacagaacat |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
38322432 |
tatgaaaattcttgtgtcgagagaaacaactcgacttctctgggtgtatgggatacaatgaaaaatcaagagaaaactaagaaggtaaatgacagaacat |
38322333 |
T |
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| Q |
210 |
ttgaatgttagaagaagaagaagtgcaaaagacttccagtggccgaagttgcctcagtatgactatgacacagcaaatgtgttgcaataaaatattatag |
309 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
38322332 |
ttgaatgttagaagaagaag---tgcaaaagacttccagtggccgaagttgcctcagtacgactatgacacagcaaatgtgttgcaataaaatattatag |
38322236 |
T |
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| Q |
310 |
gcttgataattcaaatttcaaaatgaataatatagtcctcataaaaatctgaaaaattactactgaggattttgtttaggcaacagttgaggtattaaac |
409 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |
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| T |
38322235 |
gcttgataattcaaatttcaaaatgaataatatagtcctcataaaaatctgaaaaattactactgaggattttttttaggcaacagttgagatattaaac |
38322136 |
T |
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| Q |
410 |
agcctcgttaaaatactagatgcaacatcttcaagggaggctcacccatatggaaagaataaacatcaaccagcaaacatg |
490 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
38322135 |
agcctcgttaaaatactagatgcaacatcttcaagggaggctcacccatatggaaagaataaacatcaactggcaaacatg |
38322055 |
T |
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