View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16554_low_27 (Length: 504)

Name: NF16554_low_27
Description: NF16554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16554_low_27
NF16554_low_27
[»] chr7 (1 HSPs)
chr7 (11-489)||(28521398-28521868)
[»] chr8 (5 HSPs)
chr8 (54-190)||(12726438-12726574)
chr8 (44-169)||(34293669-34293794)
chr8 (388-485)||(12726090-12726187)
chr8 (365-482)||(34294229-34294346)
chr8 (72-142)||(9506730-9506800)
[»] chr1 (2 HSPs)
chr1 (76-142)||(18214692-18214758)
chr1 (76-142)||(139462-139528)
[»] chr2 (1 HSPs)
chr2 (81-142)||(29560925-29560986)
[»] chr6 (2 HSPs)
chr6 (81-149)||(19823499-19823567)
chr6 (81-149)||(19888588-19888656)


Alignment Details
Target: chr7 (Bit Score: 413; Significance: 0; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 11 - 489
Target Start/End: Original strand, 28521398 - 28521868
Alignment:
Q  11 ttatactcttaggaaatcactcactggtttggcaggggatacacaattttcagaattttcaataatatccggaacttccatggcatgtcctcatgtcgct 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28521398 ttatactcttaggaaatcactcactggtttggcaggggatacacaattttcagaattttcaataatatccggaacttccatggcatgtcctcatgtcgct 28521497  T
Q  111 ggtgtagcagcatatgtgaagtcatttcatcccaattggagtcctgctgcaatcagatctgcaattatcaccactggtgagattattgttgctaaataac 210  Q
    ||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28521498 ggtgtagcagcatatgtgaagtcatttcatcccaaatggactcctgctgcaatcagatctgcaattatcaccactggtgagattattgttgctaaataac 28521597  T
Q  211 taaatatcacnnnnnnnaatcttgtacaaattgatccaaagcttatttacacttgtgttagttgaattattcatgtcataaactaaaaaattcacaattt 310  Q
    ||||||| ||       ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||        |||||||||    
T  28521598 taaatattactttttttaatcttgtacaaattgatccaaagcttatttacacttgtgttagttgaattgttcatgtcataaac--------tcacaattt 28521689  T
Q  311 gacatgactaacttgtttacaatctttatgaagccaaacctatgagcaaaagaattaacaatgaagcagaatttgcctttggttctggtcaactaaaccc 410  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28521690 gacatgactaacttgtttacaatctttatgaagccaaacctatgagcaaaagaattaacaatgaagcagaatttgcctttggttctggtcaactaaaccc 28521789  T
Q  411 aacaagagctgtgagtcctggtttaatctacgacatggacgaccttggctatatccaattcctatgccatgaaggttac 489  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28521790 aacaagagctgtgagtcctggtttaatctacgacatggacgaccttggctatatccaattcctatgccatgaaggttac 28521868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 53; Significance: 3e-21; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 54 - 190
Target Start/End: Complemental strand, 12726574 - 12726438
Alignment:
Q  54 caattttcagaattttcaataatatccggaacttccatggcatgtcctcatgtcgctggtgtagcagcatatgtgaagtcatttcatcccaattggagtc 153  Q
    ||||||||||||||| || | || ||||| || || ||| |||| ||||||||  |||| |||||||||||||||||||||||||| ||  |||||| ||    
T  12726574 caattttcagaatttacactgatgtccggtacatcaatgtcatgccctcatgtttctggagtagcagcatatgtgaagtcatttcacccagattggactc 12726475  T
Q  154 ctgctgcaatcagatctgcaattatcaccactggtga 190  Q
    |||| ||||||||||| ||||| || ||||| |||||    
T  12726474 ctgccgcaatcagatcagcaataattaccacaggtga 12726438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 44 - 169
Target Start/End: Original strand, 34293669 - 34293794
Alignment:
Q  44 aggggatacacaattttcagaattttcaataatatccggaacttccatggcatgtcctcatgtcgctggtgtagcagcatatgtgaagtcatttcatccc 143  Q
    |||||| || |||||||||| |||| || |||| || || |||||||||||||| |||||  |  ||||  ||||||||||||||||||||||||| ||     
T  34293669 aggggacactcaattttcagtatttacactaatgtctggcacttccatggcatgccctcacatttctggaatagcagcatatgtgaagtcatttcaccca 34293768  T
Q  144 aattggagtcctgctgcaatcagatc 169  Q
    |||||||  |||||||||||||||||    
T  34293769 aattggacccctgctgcaatcagatc 34293794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 388 - 485
Target Start/End: Complemental strand, 12726187 - 12726090
Alignment:
Q  388 tttggttctggtcaactaaacccaacaagagctgtgagtcctggtttaatctacgacatggacgaccttggctatatccaattcctatgccatgaagg 485  Q
    |||||| |||||||| | || |||||||||||||||| |||||||||| |||| |||||||| ||| |||  ||||| || ||| |||||||||||||    
T  12726187 tttggtgctggtcaagttaatccaacaagagctgtgaatcctggtttagtctatgacatggatgactttgcttatattcagttcttatgccatgaagg 12726090  T

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Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 365 - 482
Target Start/End: Original strand, 34294229 - 34294346
Alignment:
Q  365 ttaacaatgaagcagaatttgcctttggttctggtcaactaaacccaacaagagctgtgagtcctggtttaatctacgacatggacgaccttggctatat 464  Q
    ||||||| || || || ||||| |||||| | |||| | | ||||||||||||||| ||| ||||||||||||||| |||||||| ||  |||| ||| |    
T  34294229 ttaacaaggaggctgagtttgcatttggtgccggtctagttaacccaacaagagctttgaatcctggtttaatctatgacatggatgaatttggttatgt 34294328  T
Q  465 ccaattcctatgccatga 482  Q
    ||| ||| ||||||||||    
T  34294329 ccagttcttatgccatga 34294346  T

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Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 72 - 142
Target Start/End: Original strand, 9506730 - 9506800
Alignment:
Q  72 ataatatccggaacttccatggcatgtcctcatgtcgctggtgtagcagcatatgtgaagtcatttcatcc 142  Q
    |||| ||| ||||| || |||||||||||||| || ||||| || || ||||||||||| |||||||||||    
T  9506730 ataaaatctggaacctctatggcatgtcctcacgttgctggagttgctgcatatgtgaaatcatttcatcc 9506800  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 76 - 142
Target Start/End: Original strand, 18214692 - 18214758
Alignment:
Q  76 tatccggaacttccatggcatgtcctcatgtcgctggtgtagcagcatatgtgaagtcatttcatcc 142  Q
    |||||||||| || |||||||| |||||||| ||||| || |  |||||||||||||||||||||||    
T  18214692 tatccggaacctctatggcatgccctcatgttgctggagttgttgcatatgtgaagtcatttcatcc 18214758  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 76 - 142
Target Start/End: Complemental strand, 139528 - 139462
Alignment:
Q  76 tatccggaacttccatggcatgtcctcatgtcgctggtgtagcagcatatgtgaagtcatttcatcc 142  Q
    |||| ||||| || |||||||| ||||||| |||||| || || ||||||||||| |||||||||||    
T  139528 tatctggaacctctatggcatgccctcatgccgctggagttgctgcatatgtgaaatcatttcatcc 139462  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 81 - 142
Target Start/End: Original strand, 29560925 - 29560986
Alignment:
Q  81 ggaacttccatggcatgtcctcatgtcgctggtgtagcagcatatgtgaagtcatttcatcc 142  Q
    |||||||| ||| ||||||||||||| |||||| | |  ||||||||||| |||||||||||    
T  29560925 ggaacttctatgtcatgtcctcatgttgctggtattgttgcatatgtgaaatcatttcatcc 29560986  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000007; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 81 - 149
Target Start/End: Original strand, 19823499 - 19823567
Alignment:
Q  81 ggaacttccatggcatgtcctcatgtcgctggtgtagcagcatatgtgaagtcatttcatcccaattgg 149  Q
    ||||| || ||||||||||| ||||| ||||| || |  ||||||||||| ||||||||||| ||||||    
T  19823499 ggaacctctatggcatgtccccatgttgctggagttgttgcatatgtgaaatcatttcatccaaattgg 19823567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 81 - 149
Target Start/End: Original strand, 19888588 - 19888656
Alignment:
Q  81 ggaacttccatggcatgtcctcatgtcgctggtgtagcagcatatgtgaagtcatttcatcccaattgg 149  Q
    ||||| || ||| ||||||| ||||| ||||| || || ||||||||||| ||||||||||| ||||||    
T  19888588 ggaacctctatgtcatgtccgcatgttgctggagttgctgcatatgtgaaatcatttcatccaaattgg 19888656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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