View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16554_low_28 (Length: 504)
Name: NF16554_low_28
Description: NF16554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16554_low_28 |
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Alignment Details
Target: chr4 (Bit Score: 465; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 465; E-Value: 0
Query Start/End: Original strand, 13 - 489
Target Start/End: Original strand, 34143265 - 34143741
Alignment:
| Q |
13 |
agatgaattacttgaagtgtggagggtattgaggggatggattagtccagtgagtgacttgatcatcgtgttcatcagaattcagaggaaccaaagtagg |
112 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34143265 |
agatgaattacttgaagtgtggagggtattgaggggatggattagtccagtaagtgacttgatcatcgtgttcatcagaattcagaggaaccaaagtagg |
34143364 |
T |
|
| Q |
113 |
gtcattagagagaaaatcaaacacttctttccagtctcttacattcttggtgtgctctgtatcatgataaccaggcaaaccggtatcatctgtggtaatc |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34143365 |
gtcattagagagaaaatcaaacacttctttccagtctcttacattcttggtgtgctctgtatcatgataaccaggcaaaccggtatcatctgtggtaatc |
34143464 |
T |
|
| Q |
213 |
ttcttcttatcctccaggctctgtgcgaagaacatcttagaagcttcttccattttgagccttagagtgggagggactccatgatttgtaacttggaaga |
312 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
34143465 |
ttcttcttatcctccaggctctgtgcgaagaacatcttagaagcttcttccattttgagccttagagtgggagggacaccatgatttgtaacttggaaga |
34143564 |
T |
|
| Q |
313 |
aaccccattccttgcaagcacttgatatctctttgactaaggcttgtatggcagaggagtcttgaactgtgttgtggattattggggagaggttgattac |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34143565 |
aaccccattccttgcaagcacttgatatctctttgactaaggcttgtatggcagaggagtcttgaactgtgttgtggattattggggagaggttgattac |
34143664 |
T |
|
| Q |
413 |
gggaatgccttcagcttgggtgatggagagttttggtctgttttatgggttttgaatgaaagcttgatccacctctt |
489 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
34143665 |
gggaatgccttcagcttgggtgatggagagttttggtctgttttctgggttttgaatgaaagcttgatccacctctt |
34143741 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 25 - 335
Target Start/End: Original strand, 34137131 - 34137441
Alignment:
| Q |
25 |
tgaagtgtggagggtattgaggggatggattagtccagtgagtgacttgatcatcgtgttcatcagaattcagaggaaccaaagtagggtcattagagag |
124 |
Q |
| |
|
||||||||| |||| |||| ||||||||||||| ||| ||| | | ||||||||||| ||||||||||||||||||||||||||| || || || | ||| |
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| T |
34137131 |
tgaagtgtgaagggaattgtggggatggattagaccattgaataaattgatcatcgttttcatcagaattcagaggaaccaaagtgggatcgttggcgag |
34137230 |
T |
|
| Q |
125 |
aaaatcaaacacttctttccagtctcttacattcttggtgtgctctgtatcatgataaccaggcaaaccggtatcatctgtggtaatcttcttcttatcc |
224 |
Q |
| |
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|||||||| ||||||||||||||| || ||||| |||||||| |||||||||| |||||||| | | | |||||| | | || |||| |||| ||| |
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| T |
34137231 |
aaaatcaagcacttctttccagtccctaacatttttggtgtgttctgtatcataataaccagttggattgatttcatctctagcaaccttcctcttctcc |
34137330 |
T |
|
| Q |
225 |
tccaggctctgtgcgaagaacatcttagaagcttcttccattttgagccttagagtgggagggactccatgatttgtaacttggaagaaaccccattcct |
324 |
Q |
| |
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|||| ||||| || ||||||| |||| |||||| || | | | |||| ||| | | |||||||||||| ||||| ||||||||||||||||| || | |
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| T |
34137331 |
tccaaactctgagcaaagaacaatttagcagcttcatcaagtctctgcctaagactcgaagggactccatggtttgtgacttggaagaaaccccactctt |
34137430 |
T |
|
| Q |
325 |
tgcaagcactt |
335 |
Q |
| |
|
|||| |||||| |
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|
| T |
34137431 |
tgcatgcactt |
34137441 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 25 - 327
Target Start/End: Original strand, 34133220 - 34133522
Alignment:
| Q |
25 |
tgaagtgtggagggtattgaggggatggattagtccagtgagtgacttgatcatcgtgttcatcagaattcagaggaaccaaagtagggtcattagagag |
124 |
Q |
| |
|
|||| |||||||| |||||||| ||| |||||||||| ||| | || |||||| |||||||||||| || ||||||| || ||||| || | ||| || |
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|
| T |
34133220 |
tgaattgtggaggatattgaggtgattgattagtccattgaataacaccatcatcatgttcatcagaactccgaggaactaatgtaggatcttgagaaag |
34133319 |
T |
|
| Q |
125 |
aaaatcaaacacttctttccagtctcttacattcttggtgtgctctgtatcatgataaccaggcaaaccggtatcatctgtggtaatcttcttcttatcc |
224 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| ||||| ||||||||||||| |||||||| | | |||||| | | || ||||||||| ||| |
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|
| T |
34133320 |
aaaatcaaacacttctttccagtctctaacatttttggtatgctctgtatcataataaccagtaggattgacctcatctctagcaaccttcttcttctcc |
34133419 |
T |
|
| Q |
225 |
tccaggctctgtgcgaagaacatcttagaagcttcttccattttgagccttagagtgggagggactccatgatttgtaacttggaagaaaccccattcct |
324 |
Q |
| |
|
|||| ||||| || ||||||| |||||||||| || | | | |||||||| | |||||||||||| ||||| ||||| ||||||||||| |||| |
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| T |
34133420 |
tccaaactctgagcaaagaacaatctagaagcttcctcaagtctctgccttagactcaaagggactccatggtttgtgacttgaaagaaaccccactcct |
34133519 |
T |
|
| Q |
325 |
tgc |
327 |
Q |
| |
|
||| |
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|
| T |
34133520 |
tgc |
34133522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 44 - 185
Target Start/End: Original strand, 34126966 - 34127107
Alignment:
| Q |
44 |
aggggatggattagtccagtgagtgacttgatcatcgtgttcatcagaattcagaggaaccaaagtagggtcattagagagaaaatcaaacacttctttc |
143 |
Q |
| |
|
|||||| ||||||| ||| ||| | ||||||||||| | ||||||| ||||||||||||||||||| || || | | || |||||||||||||||| || |
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|
| T |
34126966 |
aggggacggattagaccattgaataacttgatcatcattttcatcacaattcagaggaaccaaagtgggatctctggcgaaaaaatcaaacacttctatc |
34127065 |
T |
|
| Q |
144 |
cagtctcttacattcttggtgtgctctgtatcatgataacca |
185 |
Q |
| |
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|||| |||||||||||||||||||||| ||||| ||||||| |
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| T |
34127066 |
cagtttcttacattcttggtgtgctctttatcaaaataacca |
34127107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 125 - 186
Target Start/End: Original strand, 34140894 - 34140955
Alignment:
| Q |
125 |
aaaatcaaacacttctttccagtctcttacattcttggtgtgctctgtatcatgataaccag |
186 |
Q |
| |
|
||||||||||||||||||| |||||| |||||||||||| | || || |||| |||||||| |
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|
| T |
34140894 |
aaaatcaaacacttctttcatgtctctaacattcttggtgagttcagtgtcataataaccag |
34140955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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