View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16554_low_29 (Length: 497)
Name: NF16554_low_29
Description: NF16554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16554_low_29 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 436; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 436; E-Value: 0
Query Start/End: Original strand, 19 - 482
Target Start/End: Complemental strand, 1167487 - 1167024
Alignment:
| Q |
19 |
agatttctcttcgttttacggacacgaaaaccaaaagcgacaagtgaagatataattgaaaatataaaattatataatcgatcaaaaagatacaatttag |
118 |
Q |
| |
|
||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1167487 |
agatttctcgtcgtttcacggacacgaaaaccaaaagcgacaagtgaagatataattgaaaatataaaattatataatcgatcaaaaagatacaatttag |
1167388 |
T |
|
| Q |
119 |
gagtatttaatgaagtctaacccaaacaagtcttttagcttgtaaagtttccttactttcatgcatttttgtttatattaccacaaactcttgctgtctt |
218 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1167387 |
gagtatttaatgaagtctaacccaaataagtcttttagcttgtaaagtttccttacttttatgcatttttgtttatattaccacaaactcttgctgtctt |
1167288 |
T |
|
| Q |
219 |
gcaaaccctaactaagaaccagaagacaattgaacgcctaaaaatattgcatgtctctgtgtcaatacaacaattaaaatacttttacaccgctaatgac |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
1167287 |
gcaaaccctaactaagaaccagaagacaattgaacgcctaaaaatattgcatgtctctgtgtcaatacaacaattaaaatatttttacaccgctaatgac |
1167188 |
T |
|
| Q |
319 |
tatcaaatctaggacaatggcctcaagtgtcctcagtcctcacgttaggatattgttgtccaaccctacaagcatactgcaaagaaattgtgcatagaat |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
1167187 |
tatcaaatctaggacaatggcctcaagtgtcctcagtcctcacgttaggatattgttgtccaaccctacaagcatactgcaaagaaattgtgcaaagaat |
1167088 |
T |
|
| Q |
419 |
caaagagtatcagaggtttgccaatcattcatatcacatagtgattacatggaccttcaaaact |
482 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1167087 |
caaagagtatcagaggtttaccaatcattcatatcacatagtgattacatggaccttcaaaact |
1167024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 57 - 102
Target Start/End: Complemental strand, 3924029 - 3923984
Alignment:
| Q |
57 |
gacaagtgaagatataattgaaaatataaaattatataatcgatca |
102 |
Q |
| |
|
|||||||| |||||||||||||||| ||||| |||||||| ||||| |
|
|
| T |
3924029 |
gacaagtggagatataattgaaaatctaaaagtatataattgatca |
3923984 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University