View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16554_low_3 (Length: 791)

Name: NF16554_low_3
Description: NF16554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16554_low_3
NF16554_low_3
[»] chr1 (3 HSPs)
chr1 (8-367)||(28275467-28275827)
chr1 (560-767)||(28275966-28276173)
chr1 (415-530)||(28275831-28275940)


Alignment Details
Target: chr1 (Bit Score: 341; Significance: 0; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 8 - 367
Target Start/End: Original strand, 28275467 - 28275827
Alignment:
Q  8 agattatactaaacaaaattaataatgacaatttcataatgaaattgagctcatatctatataaaa-attcatgtgaacctcccgcgtgcttgcatgcgc 106  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  28275467 agattatactaaacaaaattaataatgacaatttcataatggaattgagctcatatctatataaaaaattcatgtgaacctcccgcgtgcttgcatgcgc 28275566  T
Q  107 gtttaaaatcatgtttttgtgtgtttgtgatttttcatatagacatatgcatgattaaccttaaggtaataatagtataaaaggaatacaaagtttcaaa 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28275567 gtttaaaatcatgtttttgtgtgtttgtgatttttcatatagacatatgcatgattaaccttaaggtaataatagtataaaaggaatacaaagtttcaaa 28275666  T
Q  207 ctgtctaatttaatcatgataatacacacaagggacagtattcaaggaatatactctaggatttattaaattattcttcagtcttctcaaatttttaggt 306  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||    
T  28275667 ctgtctaatttaatcatgataatacacacaagggacagtattcaaggaatatactctaggatttattaaattattcttcagtcttctctattttttaggt 28275766  T
Q  307 tttggtctgcacatatttttaacattagtgaagctaaattaacttggtcaaactgatagta 367  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28275767 tttggtctgcacatatttttaacattagtgaagctaaattaacttggtcaaactgatagta 28275827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 560 - 767
Target Start/End: Original strand, 28275966 - 28276173
Alignment:
Q  560 ctttctcctagaatggcttgagccatgtattaggcttgaggcaaatacatttttacttttgtacatatgaatgtgacaaattaagcttgggaatgtagac 659  Q
    |||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28275966 ctttctcctagaatggcttgagccatgtattagggttggggcaaatacatttttacttttgtacatatgaatgtgacaaattaagcttgggaatgtagac 28276065  T
Q  660 tatgctttgttaggcggaatgtgcattgcatttatttgtgaaatcaaatgttatgtttatgttatgccatgtaatactccatatgtgtcgtattctttta 759  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28276066 tatgctttgttaggcggaatgtgcattgcatttatttgtgaaatgaaatgttatgtttatgttatgccatgtaatactccatatgtgtcgtattctttta 28276165  T
Q  760 cttatgtt 767  Q
    ||||||||    
T  28276166 cttatgtt 28276173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 415 - 530
Target Start/End: Original strand, 28275831 - 28275940
Alignment:
Q  415 ggaacttaagtaaatttggaggtgacatatcgaaggaggtcttgtgtgtggttacacagatttggacacgnnnnnnnnnnnnncacactcagaaaagttt 514  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||    ||||||||||||||||||             |||||||||||||||||    
T  28275831 ggaacttaagtaaatttggaggtgacatatcgaaggaggtcttctgtg----tacacagatttggacacg--atatatatatacacactcagaaaagttt 28275924  T
Q  515 gatgacatagacgtct 530  Q
    ||||||||||||||||    
T  28275925 gatgacatagacgtct 28275940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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