View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16554_low_30 (Length: 494)
Name: NF16554_low_30
Description: NF16554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16554_low_30 |
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Alignment Details
Target: chr4 (Bit Score: 412; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 6 - 481
Target Start/End: Original strand, 3177738 - 3178212
Alignment:
| Q |
6 |
aaaaacaactaacaaacaagccataaaccgtttctgtaaactcttccgaacagttcacaggtgtttatgtcgacaaataaactcaaataaataaattcga |
105 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
3177738 |
aaaaacaactaacaaacaagccataaaccgtttctgtaaactcttccaaacaattcacaggtgtttatgtcgataaataaactcaaataaataaattcga |
3177837 |
T |
|
| Q |
106 |
acatgtcgtaaattgaatacttcactaagctttctttctaatctttacatttatgattgaatgatgcagcttgtattggcaaatcctgttggaaatgtga |
205 |
Q |
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||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3177838 |
acatgccttaaattgaatacttcactaagctttctttctaatctttacatttatgattgaatgatgcagcttgtattggcaaatcctgttggaaatgtga |
3177937 |
T |
|
| Q |
206 |
tggaaaagttgcatgagtcaaatattttggattcctttggaatgaaaggattgtatctctcagtaggagaagctgtggctgacatttcatcatcgtggaa |
305 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3177938 |
tggaaaagttgcatgagtcaaatattttggattcctttggaatgaaaggattatatctctcagtaggagaagctgtggctgacatttcatcatcgtggaa |
3178037 |
T |
|
| Q |
306 |
agctcagccttgatgaatttctaaaataaagggaaaaggaaaaagatgatggcttctaactttcagcagttagaaagnnnnnnnnnctaactatggaagt |
405 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| |
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| T |
3178038 |
agctcagccttgatgaatttctaaaataaagggaaaaggaaaaagatgatggcttctaactttcagcagttaaaaag-aaaaaaaactaactatggaagt |
3178136 |
T |
|
| Q |
406 |
tttttgtcaactttgtttaaattaaagtcttgaaaatcaaggcattggtttttaatttagaagtgtttcttattct |
481 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
3178137 |
tttttgtcaactttgtttaaattaaagtcttgaaaatcaagacattggtttttaatttagaagtgtttcttattct |
3178212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 170 - 319
Target Start/End: Complemental strand, 44009593 - 44009444
Alignment:
| Q |
170 |
tgcagcttgtattggcaaatcctgttggaaatgtgatggaaaagttgcatgagtcaaatattttggattcctttggaatgaaaggattgtatctctcagt |
269 |
Q |
| |
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|||||||||| ||| |||||||||||||||||||||||||||||| ||| ||| || ||||||||| |||||||| | |||||| | |||||| |||| |
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| T |
44009593 |
tgcagcttgtgctggtaaatcctgttggaaatgtgatggaaaagttacatatgtcgaaaattttggatacctttggatttaaaggactctatctcacagt |
44009494 |
T |
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| Q |
270 |
aggagaagctgtggctgacatttcatcatcgtggaaagctcagccttgat |
319 |
Q |
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||||||||||| |||||||||||| ||| ||||||||| ||||||| |
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| T |
44009493 |
gggagaagctgttgctgacatttcaaaatctgagaaagctcaaccttgat |
44009444 |
T |
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