View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16554_low_34 (Length: 468)
Name: NF16554_low_34
Description: NF16554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16554_low_34 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 15 - 350
Target Start/End: Original strand, 457214 - 457549
Alignment:
| Q |
15 |
atgaagaattgaatattgaaaggaactctgaggagccaaatctaaattcaattacacactgctgtattaaaaatggatgaatccaacaaccacttatttg |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
457214 |
atgaagaattgaatattgaaaggaactctgaggagccaaatctaaattcaattacacactgctgtattaaaaatggatgaatccaacaaccacttatttg |
457313 |
T |
|
| Q |
115 |
cctctttcatagaataaatgtctcataccactcttttagactcatgcatctactaccaagttaacaaaaataagataaagttaccnnnnnnncaagtaca |
214 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
457314 |
cttctttcatagaataaatgtctcataccactcttttagactcatgcatctactaccaagttaacaaaaataagataaagttaccaaaaaaacaagtaca |
457413 |
T |
|
| Q |
215 |
tctagcaatagcatatccacttcaaagaaaagaaaaatgtgataaatttgagatttgactaccttcaaagtgataccaataaaatctcattggtgaaaag |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
457414 |
tctagcaatagcatatccacttcaaagaaaagaaaaatgtgataaatttgagatttgactaccttcaaagtgatgccaataaaatctcattggtgaaaag |
457513 |
T |
|
| Q |
315 |
ctctcaatgttgctgccatttgataataaaatcgaa |
350 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
457514 |
ctctcaatgttgctgccatttgataataaaatcgaa |
457549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University