View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16554_low_37 (Length: 448)
Name: NF16554_low_37
Description: NF16554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16554_low_37 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 421; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 11 - 431
Target Start/End: Original strand, 17224028 - 17224448
Alignment:
| Q |
11 |
ttattctttgcacatttaatatttgtttatctttgcttgtttattgtcacaggcacatcaatgatcaacaattcatggattttatgatagatattttgtg |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17224028 |
ttattctttgcacatttaatatttgtttatctttgcttgtttattgtcacaggcacatcaatgatcaacaattcatggattttatgatagatattttgtg |
17224127 |
T |
|
| Q |
111 |
taattattcattggtctaattcatttttctctaacttattgtgcagtgccgagaaaggaaaccttggtgtacctcagttacctggccaaggttgttcatt |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17224128 |
taattattcattggtctaattcatttttctctaacttattgtgcagtgccgagaaaggaaaccttggtgtacctcagttacctggccaaggttgttcatt |
17224227 |
T |
|
| Q |
211 |
tcacagttttcgcactaatacatacaaacttagtttcatggaaagtccttctggaataaaggtaaggtgcagctacatacgtgtttccttaaaggtcatt |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17224228 |
tcacagttttcgcactaatacatacaaacttagtttcatggaaagtccttctggaataaaggtaaggtgcagctacatacgtgtttccttaaaggtcatt |
17224327 |
T |
|
| Q |
311 |
attagattcttgtggatgccgtcactgcctaatgcctattcattggttaatgcagctatttggaacttattatgtatttatctgtaatatatgctaatta |
410 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17224328 |
attagattcttgtggatgccgtcactgcctaatgcctattcattggttaatgcagctatttggaacttattatgtatttatctgtaatatatgctaatta |
17224427 |
T |
|
| Q |
411 |
cattttctgttagaaatatgt |
431 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
17224428 |
cattttctgttagaaatatgt |
17224448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 74; Significance: 9e-34; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 162 - 275
Target Start/End: Complemental strand, 39949142 - 39949029
Alignment:
| Q |
162 |
agaaaggaaaccttggtgtacctcagttacctggccaaggttgttcatttcacagttttcgcactaatacatacaaacttagtttcatggaaagtccttc |
261 |
Q |
| |
|
||||||| ||||||||||| |||||||||||||||||||||||||| ||||||| |||||| |||||||| |||||||||| ||||||||||| |||||| |
|
|
| T |
39949142 |
agaaaggtaaccttggtgttcctcagttacctggccaaggttgttcttttcacacttttcgtactaatacttacaaacttactttcatggaaactccttc |
39949043 |
T |
|
| Q |
262 |
tggaataaaggtaa |
275 |
Q |
| |
|
||| || ||||||| |
|
|
| T |
39949042 |
tggtatcaaggtaa |
39949029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University