View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16554_low_39 (Length: 441)
Name: NF16554_low_39
Description: NF16554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16554_low_39 |
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Alignment Details
Target: chr8 (Bit Score: 381; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 9 - 422
Target Start/End: Complemental strand, 25895137 - 25894724
Alignment:
| Q |
9 |
gagatgaatacttagaaattagaattatagtcaaatcataatgttgannnnnnnatttatttgcaaggttcttagaagaaatataagcaaatcaatttag |
108 |
Q |
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| T |
25895137 |
gagatgaatacttagaaattagaattatagtcaaatcataatgttgatttttttatttatttgcaaggttcttagaagaaatataagcaaatcaatttag |
25895038 |
T |
|
| Q |
109 |
ggttcctaaaagaagggatgcatatttatggttctatatagatatggagtggtcttattaatctgatcagtactcggtgctatcaacttataagtagttt |
208 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25895037 |
ggttcctaaaagaagggatgcatatttatgattctatatagatatggagtggtcttattaatctgatcagtactcggtgctatcaacttataagtagttt |
25894938 |
T |
|
| Q |
209 |
attcaacccctatagatatgtagacagccaccatttatcactgtaattggattttgaaagctaaaattctagagcacatacaggcgtttgtgttggtttt |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
25894937 |
attcaacccctatagatatgtagacagccaccatttatcactgtaattggattttgaaagctaaaattctagagcacatagaggcgtttgtgttggtttt |
25894838 |
T |
|
| Q |
309 |
gtcaaagattgaaattaatgaaatgcaaatatacattcatatcctatgaattggtgcttaaggatttttatcctgtatgcataaagtcaatattccagaa |
408 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
25894837 |
gtcaaagattgaaattaatgaaatgcaaatatacattcatatcctatgaattggtgcttaaggaattttatcctgtatgcataaagtcaatattccagaa |
25894738 |
T |
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| Q |
409 |
ttaggattaatgtc |
422 |
Q |
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|||||||||||||| |
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| T |
25894737 |
ttaggattaatgtc |
25894724 |
T |
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