View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16554_low_41 (Length: 420)
Name: NF16554_low_41
Description: NF16554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16554_low_41 |
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Alignment Details
Target: chr1 (Bit Score: 311; Significance: 1e-175; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 16 - 407
Target Start/End: Complemental strand, 40384067 - 40383671
Alignment:
| Q |
16 |
cttttcactaagtccactttccttttcaatcactctcaaagtttccaaagtttcttttattgctctctcttgtcgttctccatcatacagaaaaaattcc |
115 |
Q |
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| T |
40384067 |
cttttcactaagtccactttccttttcaatcactctcaaagtttccaaagtttcttttattgctctctcttgtcgttctccatcatacagaaaaaattcc |
40383968 |
T |
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| Q |
116 |
atcatgtgcattgactgtgaaaatgaaaatcattccaatgtcattgtagggatatataacagaaaagtagtaaaatttaatctcataaagtattactctg |
215 |
Q |
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| T |
40383967 |
atcatgtgcattgactgtgaaaatgaaaatcattccaatgtcattgtagggatatataacagaatagtagtaaaatttaatctcataaagtattactctg |
40383868 |
T |
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| Q |
216 |
atgct-nnnnnnnctatattaatatttgata----cgaatgcaagttttaactcccaataccttttttctctatttttggtgtgtgtgggtttcataata |
310 |
Q |
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| T |
40383867 |
atggtaaaaaaaactacattaacatttgatatgttggaatgtaagttttaactcgcaataccttttttctctatttttggtgtgtgtgggtttcataata |
40383768 |
T |
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| Q |
311 |
taacattttagtttatctttgaattcttggaatttgatagttttggagtctcttcctaaatcttaatgagctccaaagcttcatgtttgatgatatt |
407 |
Q |
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| T |
40383767 |
gaacattttagtttatttttgaattcttggaatctgatagttttggagtctcttcctaaatcttaatgagctccaaagcttcatgtttgatgatatt |
40383671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 315 - 413
Target Start/End: Complemental strand, 12673270 - 12673179
Alignment:
| Q |
315 |
attttagtttatctttgaattcttggaatttgatagttttggagtctcttcctaaatcttaatgagctccaaagcttcatgtttgatgatattcttcga |
413 |
Q |
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| T |
12673270 |
attttagcttatctttgaattcttggaatctgatagttttggagtatcctcc-------taatgagcttcaaagcctcatgtttgatgatctttttcga |
12673179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 315 - 407
Target Start/End: Original strand, 16081644 - 16081729
Alignment:
| Q |
315 |
attttagtttatctttgaattcttggaatttgatagttttggagtctcttcctaaatcttaatgagctccaaagcttcatgtttgatgatatt |
407 |
Q |
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| T |
16081644 |
attttagcttatctttgaattcatggaatttggtagttttggagtctcctcc-------taatgagcttcaaagcctcatgtttgatgatatt |
16081729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 315 - 407
Target Start/End: Complemental strand, 40536367 - 40536282
Alignment:
| Q |
315 |
attttagtttatctttgaattcttggaatttgatagttttggagtctcttcctaaatcttaatgagctccaaagcttcatgtttgatgatatt |
407 |
Q |
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| T |
40536367 |
attttagcttatctttgaattcttggaatctggtagctttggagtctcctcc-------taatgagcttcaaagcctcatgtttgatgatatt |
40536282 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 315 - 407
Target Start/End: Complemental strand, 45752728 - 45752643
Alignment:
| Q |
315 |
attttagtttatctttgaattcttggaatttgatagttttggagtctcttcctaaatcttaatgagctccaaagcttcatgtttgatgatatt |
407 |
Q |
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| T |
45752728 |
attttagcttatctttgaattcttggaatctggtagctttggagtctcctcc-------taatgagcttcaaagcctcatgtttgatgatatt |
45752643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 315 - 369
Target Start/End: Complemental strand, 15828421 - 15828367
Alignment:
| Q |
315 |
attttagtttatctttgaattcttggaatttgatagttttggagtctcttcctaa |
369 |
Q |
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||||||| ||||||||||||||||||||| | ||||||||||||||| |||||| |
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| T |
15828421 |
attttagcttatctttgaattcttggaatctagtagttttggagtctcctcctaa |
15828367 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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