View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16554_low_42 (Length: 418)
Name: NF16554_low_42
Description: NF16554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16554_low_42 |
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Alignment Details
Target: chr3 (Bit Score: 371; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 19 - 401
Target Start/End: Original strand, 45447474 - 45447855
Alignment:
| Q |
19 |
caaaaagcattgtgtatttttattatctcatgttgtgattgttcataattttctttttcagagactacgtgaagcaattctagagactcagaaaaatgtg |
118 |
Q |
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| T |
45447474 |
caaaaagcattgtgtatttttattatctcatgttgtgattgttcataattttctttttcagagactacgtgaagcaattctagagactcagaaaaatgtg |
45447573 |
T |
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| Q |
119 |
aaatttcagcccgtggaagataccccagatggtaattcaaacacagttctgtttttgatcaatttaccattggtgttgttgttatttgctagaaattgta |
218 |
Q |
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| T |
45447574 |
aaatttcagcccgtggaagataccccagatggtaattcaaacacagttctgtttttgatcaatttaccattggtgttgttgttatttgctagaaattgta |
45447673 |
T |
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| Q |
219 |
gccaattagctatgaaaatgtagaacatgataattaaataatacttgaagtataagaaaaagaaccatcaattgagggactaagatgacgaattttatat |
318 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45447674 |
gccaattagcaatgaaaatgtagaacatgataattaaataata-ttgaagtataagaaaaagaaccatcaattgagggactaagatgacgaattttatat |
45447772 |
T |
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| Q |
319 |
attttagggactattgttaaatggactccaaaagctagctcatcaaatgagggagtccaagcactacttatatacaatgccta |
401 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45447773 |
attttagggactattgttaaatggactccaaaagctagctcatcaaatgagggagtccaagcactacttatatacaatgccta |
45447855 |
T |
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