View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16554_low_46 (Length: 395)
Name: NF16554_low_46
Description: NF16554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16554_low_46 |
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| [»] scaffold0417 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 279; Significance: 1e-156; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 15 - 378
Target Start/End: Original strand, 19975346 - 19975709
Alignment:
| Q |
15 |
atgaaacatagtctgagacttttcaatatgttgtgggactgtatcaatagaaataaatacatgtgcatcaatatggtctgatgaatggtaatgttgagta |
114 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || ||||| |||||| |
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| T |
19975346 |
atgaaacgtagtctgagacttttcaatatgttgtgggactgtatcaatagaaataaatacatgcgcatcaatatggtctgatgactgctaatgctgagta |
19975445 |
T |
|
| Q |
115 |
acaggtagcttaacgctatatgtgtgtatgtttgcaaccttaactccatggtctgtgtgcacctcctgctcacatggggagaaagagcggctcatatcga |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||| |||||||||||||||||||||| |||||| |
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| T |
19975446 |
acaggtagcttaacgctatatgtgtgtatgtttgcaaccttagctccatggtctgcgtgcacctcctgctgacatggggagaaagagcggctcgtatcga |
19975545 |
T |
|
| Q |
215 |
agcctcaaaatccttagaggagccaatgccagagggattatcctttgttttcgatccttgcgtggactgcttctgcgaaagttcaattttttccctttat |
314 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||| |||| |||||||||||||||||| ||| ||||||||| |||||||||||||| |
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| T |
19975546 |
agcctcaaaatctttagaggagccaatgccagagggattatcctttgctttccatccttgcgtggactgctactgtgaaagttcagttttttccctttat |
19975645 |
T |
|
| Q |
315 |
taattggaagaaccttctcttgtttgtctgannnnnnnggatgtaaccaccagcaagatgttat |
378 |
Q |
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||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||| |
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| T |
19975646 |
taattggaagaaccttctcttctttgtctgattttttcggatgtaaccaccagcaagatgttat |
19975709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 15 - 378
Target Start/End: Complemental strand, 21017487 - 21017124
Alignment:
| Q |
15 |
atgaaacatagtctgagacttttcaatatgttgtgggactgtatcaatagaaataaatacatgtgcatcaatatggtctgatgaatggtaatgttgagta |
114 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || ||||| |||||| |
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| T |
21017487 |
atgaaacgtagtctgagacttttcaatatgttgtgggactgtatcaatagaaataaatacatgcgcatcaatatggtctgatgactgctaatgctgagta |
21017388 |
T |
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| Q |
115 |
acaggtagcttaacgctatatgtgtgtatgtttgcaaccttaactccatggtctgtgtgcacctcctgctcacatggggagaaagagcggctcatatcga |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||| |||||||||||||||||||||| |||||| |
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| T |
21017387 |
acaggtagcttaacgctatatgtgtgtatgtttgcaaccttagctccatggtctgcgtgcacctcctgctgacatggggagaaagagcggctcgtatcga |
21017288 |
T |
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| Q |
215 |
agcctcaaaatccttagaggagccaatgccagagggattatcctttgttttcgatccttgcgtggactgcttctgcgaaagttcaattttttccctttat |
314 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||| |||| |||||||||||||||||| ||| ||||||||| |||||||||||||| |
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| T |
21017287 |
agcctcaaaatctttagaggagccaatgccagagggattatcctttgctttccatccttgcgtggactgctactgtgaaagttcagttttttccctttat |
21017188 |
T |
|
| Q |
315 |
taattggaagaaccttctcttgtttgtctgannnnnnnggatgtaaccaccagcaagatgttat |
378 |
Q |
| |
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||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||| |
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| T |
21017187 |
taattggaagaaccttctcttctttgtctgattttttcggatgtaaccaccagcaagatgttat |
21017124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 159 - 339
Target Start/End: Original strand, 27860239 - 27860423
Alignment:
| Q |
159 |
tccatggtctgtgtgcacctcctgctcac-atggggagaaagagcggctcatatcgaagcctcaaaatccttagaggagccaatgccagagggattatcc |
257 |
Q |
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||||||||||| |||||||||||||| | |||||||||| |||| ||| ||| ||||||||||| | |||||||||| |||| |||||||||||| |
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| T |
27860239 |
tccatggtctgcgtgcacctcctgctgatgatggggagaaggagcagcttgtattgaagcctcaaaggctgtagaggagcctatgctggagggattatcc |
27860338 |
T |
|
| Q |
258 |
tttgttttcgatccttgcgtggactgcttctgcgaaagttcaatttttt---ccctttattaattggaagaaccttctcttgttt |
339 |
Q |
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||| |||| |||| || |||||| ||||||| |||||||||||||||| || ||||| || ||||||||||||||||||||| |
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| T |
27860339 |
tttactttccatccatgtgtggaccgcttctgtgaaagttcaattttttttcccttttatcaactggaagaaccttctcttgttt |
27860423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 23 - 184
Target Start/End: Original strand, 19974848 - 19975015
Alignment:
| Q |
23 |
tagtctgagacttttcaatatgttgtgggactgtatcaatagaaataaa------tacatgtgcatcaatatggtctgatgaatggtaatgttgagtaac |
116 |
Q |
| |
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|||||||||| ||||||||||||||||| |||||||||||||||||| || || ||||||||||||||| || || ||||| |||||||| |
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| T |
19974848 |
tagtctgagatatttcaatatgttgtggggttgtatcaatagaaataaaagaaaatatttgcgcatcaatatggtctattggctgctaatgctgagtaac |
19974947 |
T |
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| Q |
117 |
aggtagcttaacgctatatgtgtgtatgtttgcaaccttaactccatggtctgtgtgcacctcctgct |
184 |
Q |
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| T |
19974948 |
cggtagcttaacgctatctatgtgtctgtttgctaactcaactccatggtctgcgtgcacctcctgct |
19975015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 23 - 184
Target Start/End: Complemental strand, 21017985 - 21017818
Alignment:
| Q |
23 |
tagtctgagacttttcaatatgttgtgggactgtatcaatagaaataaa------tacatgtgcatcaatatggtctgatgaatggtaatgttgagtaac |
116 |
Q |
| |
|
|||||||||| ||||||||||||||||| |||||||||||||||||| || || ||||||||||||||| || || ||||| |||||||| |
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| T |
21017985 |
tagtctgagatatttcaatatgttgtggggttgtatcaatagaaataaaagaaaatatttgcgcatcaatatggtctattggctgctaatgctgagtaac |
21017886 |
T |
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| Q |
117 |
aggtagcttaacgctatatgtgtgtatgtttgcaaccttaactccatggtctgtgtgcacctcctgct |
184 |
Q |
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|||||||||||||||| | ||||| ||||||| | || |||||||||||||| |||||||||||||| |
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| T |
21017885 |
cggtagcttaacgctatctatgtgtctgtttgctaactcaactccatggtctgcgtgcacctcctgct |
21017818 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 15 - 70
Target Start/End: Original strand, 27860109 - 27860164
Alignment:
| Q |
15 |
atgaaacatagtctgagacttttcaatatgttgtgggactgtatcaatagaaataa |
70 |
Q |
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||||| || ||||||| |||||||||||||||| ||| ||||||||||||||||| |
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| T |
27860109 |
atgaagcaaagtctgaaacttttcaatatgttgcggggttgtatcaatagaaataa |
27860164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0417 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0417
Description:
Target: scaffold0417; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 216 - 300
Target Start/End: Complemental strand, 4905 - 4821
Alignment:
| Q |
216 |
gcctcaaaatccttagaggagccaatgccagagggattatcctttgttttcgatccttgcgtggactgcttctgcgaaagttcaa |
300 |
Q |
| |
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||||||||| | ||||||||||| ||| | ||||||||||||||| |||| |||||||| |||||||||| || |||||||||| |
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| T |
4905 |
gcctcaaaagctttagaggagcctatgtcggagggattatccttttctttccatccttgcctggactgcttatgtgaaagttcaa |
4821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 24 - 70
Target Start/End: Complemental strand, 8229667 - 8229621
Alignment:
| Q |
24 |
agtctgagacttttcaatatgttgtgggactgtatcaatagaaataa |
70 |
Q |
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||||||||||||||||||||||| |||| ||||||||||| |||||| |
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| T |
8229667 |
agtctgagacttttcaatatgttatggggctgtatcaatataaataa |
8229621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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