View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16554_low_47 (Length: 394)
Name: NF16554_low_47
Description: NF16554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16554_low_47 |
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Alignment Details
Target: chr3 (Bit Score: 189; Significance: 1e-102; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 19 - 248
Target Start/End: Complemental strand, 7623916 - 7623691
Alignment:
| Q |
19 |
tttgcaccttatggtccacggtggcgaatgctccgaaaaatctcctcagttcatctcttctccaacaaagtcatggaagaattcaaacacttgcgtcagg |
118 |
Q |
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| T |
7623916 |
tttgccccttatggtccgaggtggcgaatgctccgaaaaatctcctccgttcatctcttctccaacaaagtcatggaagaattcaaacacttgcgtcagg |
7623817 |
T |
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| Q |
119 |
ttagttagttaattaatatcattttctcaatttcaacataagttgcactatcaatgtcatttatacgagagtcacatcattttgtaacctgaaaattaat |
218 |
Q |
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| T |
7623816 |
ttagtta----attaatatcattttctcaatttcaacataagttgcactatcaatgtcatttatacgagagtcacatcattttgtaacctgaaaattaat |
7623721 |
T |
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| Q |
219 |
actcattcgaattttatataagagaataaa |
248 |
Q |
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| T |
7623720 |
actcatttgaattttatctaagagaataaa |
7623691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 246 - 385
Target Start/End: Complemental strand, 7623530 - 7623391
Alignment:
| Q |
246 |
aaaaatcttcccagaaaattaaattaaaaatatagtattcacatttttctgaaaatacaaactgctgttttgcatcttcaaggagctagtatgtgttttt |
345 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7623530 |
aaaaatcttccgagaaaattaaattaaaaatatagtattcacatttttctgaaaatacaaactgctgttttgcatcttcaaggagctagtatgtgttttt |
7623431 |
T |
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| Q |
346 |
agtcatgaacaagttttggttatattgacttgagtataat |
385 |
Q |
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| T |
7623430 |
agtcatgaacaagttttgcttatattgacttgagtataat |
7623391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 19 - 158
Target Start/End: Original strand, 7659769 - 7659908
Alignment:
| Q |
19 |
tttgcaccttatggtccacggtggcgaatgctccgaaaaatctcctcagttcatctcttctccaacaaagtcatggaagaattcaaacacttgcgtcagg |
118 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
7659769 |
tttgcaccttatggtccgcggtggcgaatgctccgaaaaatctcctcagttcatctcttctcaaacaaagtcatggaagaattcaaacacttgcgtcagg |
7659868 |
T |
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| Q |
119 |
ttagttagttaattaatatcattttctcaatttcaacata |
158 |
Q |
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| T |
7659869 |
ttagttagttaattaatatcattttctcaatttcaacata |
7659908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 25 - 125
Target Start/End: Original strand, 7675402 - 7675502
Alignment:
| Q |
25 |
ccttatggtccacggtggcgaatgctccgaaaaatctcctcagttcatctcttctccaacaaagtcatggaagaattcaaacacttgcgtcaggttagtt |
124 |
Q |
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| T |
7675402 |
ccttatggtccaaggtggcgactactcagaaaaatcactactgttcacctcttctccaaccaatccttggatgaatttaaacacctacgtcaggttagtt |
7675501 |
T |
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| Q |
125 |
a |
125 |
Q |
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| T |
7675502 |
a |
7675502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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