View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16554_low_48 (Length: 393)
Name: NF16554_low_48
Description: NF16554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16554_low_48 |
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Alignment Details
Target: chr5 (Bit Score: 314; Significance: 1e-177; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 16 - 387
Target Start/End: Original strand, 35034286 - 35034653
Alignment:
| Q |
16 |
aagtgaaccatgaaaagtccaaaatgaagtatgcatcaaagaaaagcacactaatttgaacacattccatcctaaaacatcagtatcattgcaaatttat |
115 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35034286 |
aagtgaaccatgaaaagtccaaaatgaagtatgcatcaaagaaaagcacactaatttgaacacattccatcctaaaacatcagtatcattgcaaatta-- |
35034383 |
T |
|
| Q |
116 |
attgaaaacaataattgactcgatcagtatttgtagttgtggaagtatgtaataaaattttaaactagattaacaggccttttcccccataacgtgtcat |
215 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
35034384 |
--tgaaaacaataattgactcgattagtatttgtagttgtggaagtatgtaataaaattttaaattagattaacaggccttttcccccataacgtgtcat |
35034481 |
T |
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| Q |
216 |
caactagtaaacttttaagnnnnnnnctctcataatgttgttctaccaagtacacaaccacacattgtgcactgaagcacatcaatggactcaagtcaca |
315 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35034482 |
caactagtaaacttttaagaaaaaaactctcataatgttgttctaccaagtacacaaccacacattgtgcactgaagcacatcaatggactcaagtcaca |
35034581 |
T |
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| Q |
316 |
aatatatttaaggcattcaatataatataaaaaagattaaactcgataaaaatgtaaagacagaataatata |
387 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| |
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| T |
35034582 |
aatatatttaaggcattcaatataatataaaaaagattaaactagataaaaatgtaaagacagaagaatata |
35034653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 16 - 101
Target Start/End: Original strand, 35056534 - 35056619
Alignment:
| Q |
16 |
aagtgaaccatgaaaagtccaaaatgaagtatgcatcaaagaaaagcacactaatttgaacacattccatcctaaaacatcagtat |
101 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35056534 |
aagtgaaccatgaaaagtccaaaatgaagtatgcatcaaagaaaagcacactaatttgaacacattccatcctaaaacatcagtat |
35056619 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 295; Significance: 1e-165; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 16 - 387
Target Start/End: Complemental strand, 36854520 - 36854149
Alignment:
| Q |
16 |
aagtgaaccatgaaaagtccaaaatgaagtatgcatcaaagaaaagcacactaatttgaacacattccatcctaaaacatcagtatcattgcaaatttat |
115 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36854520 |
aagtgaaccatgaaaagtcctaaatgaagtatgcatcaaagaaaagcacactaatttgaacacattccatcctaaaacatcagtatcattgcaaatttat |
36854421 |
T |
|
| Q |
116 |
attgaaaacaataattgactcgatcagtatttgtagttgtggaagtatgtaataaaattttaaactagattaacaggccttttcccccataacgtgtcat |
215 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| ||| |||||||||||| ||||||| |
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| T |
36854420 |
attgaaaacaataattgactcgattagtatttgtagttgtggaagtatttaataaaattttaaactagattaacaagccctttcccccataatgtgtcat |
36854321 |
T |
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| Q |
216 |
caactagtaaacttttaagnnnnnnnctctcataatgttgttctaccaagtacacaaccacacattgtgcactgaagcacatcaatggactcaagtcaca |
315 |
Q |
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|| |||||||||||||||| ||||| |||||||||||||||||||||||| |||||||| |||||||||||||| ||||||||||||||||||| |
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| T |
36854320 |
cagctagtaaacttttaagaaaaaaactctcctaatgttgttctaccaagtacacagccacacatcgtgcactgaagcacttcaatggactcaagtcaca |
36854221 |
T |
|
| Q |
316 |
aatatatttaaggcattcaatataatataaaaaagattaaactcgataaaaatgtaaagacagaataatata |
387 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| |||||| |
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| T |
36854220 |
aatatatttaaggcattcaatataatataaaaaatattaaactagataaaaatgtaaagacagaagaatata |
36854149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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