View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16554_low_5 (Length: 687)

Name: NF16554_low_5
Description: NF16554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16554_low_5
NF16554_low_5
[»] chr6 (24 HSPs)
chr6 (216-567)||(16530102-16530454)
chr6 (28-159)||(1166780-1166912)
chr6 (564-629)||(16530102-16530167)
chr6 (63-164)||(7061830-7061931)
chr6 (63-164)||(7069016-7069117)
chr6 (63-164)||(9864088-9864189)
chr6 (63-164)||(31128614-31128715)
chr6 (63-164)||(34710884-34710985)
chr6 (28-164)||(4737671-4737807)
chr6 (634-678)||(16530033-16530077)
chr6 (63-164)||(1427738-1427839)
chr6 (63-164)||(4019550-4019651)
chr6 (63-164)||(4025976-4026077)
chr6 (63-164)||(4717855-4717956)
chr6 (63-164)||(32327808-32327909)
chr6 (28-164)||(4187491-4187627)
chr6 (28-163)||(13671105-13671241)
chr6 (28-164)||(31548701-31548837)
chr6 (63-137)||(4668723-4668797)
chr6 (63-164)||(34649606-34649707)
chr6 (63-164)||(34656057-34656158)
chr6 (28-111)||(9847338-9847422)
chr6 (63-163)||(27670837-27670936)
chr6 (28-164)||(21261863-21262000)
[»] chr4 (17 HSPs)
chr4 (17-180)||(36754086-36754249)
chr4 (33-161)||(7781122-7781250)
chr4 (28-137)||(5659823-5659933)
chr4 (28-164)||(8104675-8104811)
chr4 (28-164)||(13594902-13595038)
chr4 (28-164)||(55462064-55462200)
chr4 (32-137)||(30210841-30210947)
chr4 (28-164)||(27591105-27591241)
chr4 (28-164)||(37367602-37367738)
chr4 (63-164)||(17457650-17457751)
chr4 (63-164)||(30239020-30239121)
chr4 (63-163)||(16406140-16406240)
chr4 (63-164)||(41373792-41373893)
chr4 (73-164)||(37355672-37355763)
chr4 (49-111)||(52182510-52182572)
chr4 (98-135)||(8104800-8104837)
chr4 (98-135)||(13595027-13595064)
[»] chr1 (25 HSPs)
chr1 (17-165)||(44917184-44917332)
chr1 (27-164)||(1175388-1175525)
chr1 (28-164)||(31073134-31073271)
chr1 (17-164)||(23252139-23252287)
chr1 (28-164)||(28996801-28996937)
chr1 (28-164)||(29002517-29002653)
chr1 (28-164)||(26622255-26622391)
chr1 (28-164)||(41304821-41304957)
chr1 (28-164)||(45023329-45023465)
chr1 (30-164)||(11912565-11912699)
chr1 (28-137)||(1115284-1115394)
chr1 (71-163)||(4600323-4600415)
chr1 (105-180)||(44917106-44917181)
chr1 (63-164)||(23761677-23761778)
chr1 (63-164)||(39052633-39052734)
chr1 (63-164)||(39059005-39059106)
chr1 (63-164)||(43687425-43687526)
chr1 (31-164)||(9869890-9870024)
chr1 (63-164)||(45016587-45016688)
chr1 (63-163)||(44242151-44242251)
chr1 (28-137)||(32798544-32798653)
chr1 (63-164)||(6239450-6239551)
chr1 (63-164)||(42092702-42092803)
chr1 (63-163)||(35085796-35085896)
chr1 (98-135)||(45023454-45023491)
[»] chr3 (16 HSPs)
chr3 (28-179)||(20650361-20650513)
chr3 (28-164)||(43995857-43995994)
chr3 (31-164)||(47441619-47441753)
chr3 (30-164)||(43932358-43932493)
chr3 (27-135)||(2786532-2786641)
chr3 (28-164)||(25894021-25894157)
chr3 (30-164)||(10940607-10940742)
chr3 (28-164)||(32747163-32747299)
chr3 (54-164)||(6037074-6037184)
chr3 (28-164)||(24179867-24180003)
chr3 (63-164)||(27501282-27501383)
chr3 (63-164)||(9569848-9569949)
chr3 (73-164)||(23069283-23069374)
chr3 (63-164)||(4310795-4310895)
chr3 (63-164)||(9576350-9576451)
chr3 (98-135)||(32747288-32747325)
[»] chr5 (19 HSPs)
chr5 (28-179)||(12505069-12505221)
chr5 (28-161)||(5877015-5877148)
chr5 (28-164)||(29413959-29414095)
chr5 (31-137)||(2823078-2823185)
chr5 (28-163)||(22360758-22360893)
chr5 (28-164)||(22314623-22314759)
chr5 (47-137)||(2439607-2439697)
chr5 (28-162)||(42151615-42151749)
chr5 (63-164)||(34356580-34356681)
chr5 (28-164)||(25893939-25894075)
chr5 (28-111)||(30579510-30579594)
chr5 (63-164)||(34358371-34358472)
chr5 (63-164)||(40957942-40958043)
chr5 (63-164)||(2958666-2958767)
chr5 (63-164)||(2967135-2967236)
chr5 (63-164)||(29974765-29974866)
chr5 (63-164)||(29981268-29981369)
chr5 (63-164)||(30021776-30021877)
chr5 (63-134)||(4974390-4974461)
[»] chr8 (14 HSPs)
chr8 (28-164)||(45067716-45067853)
chr8 (27-137)||(15013211-15013322)
chr8 (63-163)||(11357499-11357599)
chr8 (28-164)||(36425021-36425157)
chr8 (63-164)||(1239007-1239108)
chr8 (63-164)||(6463891-6463992)
chr8 (63-164)||(7312153-7312254)
chr8 (63-164)||(36004799-36004900)
chr8 (63-164)||(36076771-36076872)
chr8 (63-134)||(16709997-16710068)
chr8 (63-164)||(8012635-8012736)
chr8 (63-164)||(36021063-36021164)
chr8 (63-134)||(12769722-12769793)
chr8 (27-84)||(15013428-15013486)
[»] chr7 (27 HSPs)
chr7 (28-164)||(15949942-15950078)
chr7 (27-164)||(19090589-19090726)
chr7 (28-164)||(15915421-15915557)
chr7 (28-161)||(26602783-26602916)
chr7 (29-164)||(9642208-9642343)
chr7 (63-164)||(3923422-3923523)
chr7 (63-164)||(21643312-21643413)
chr7 (28-164)||(14288514-14288650)
chr7 (28-164)||(14299699-14299835)
chr7 (28-133)||(33849931-33850037)
chr7 (63-164)||(1379753-1379854)
chr7 (63-164)||(2447454-2447555)
chr7 (63-164)||(5049227-5049328)
chr7 (63-164)||(6020179-6020280)
chr7 (63-164)||(6796244-6796345)
chr7 (63-164)||(8184718-8184819)
chr7 (63-164)||(8192278-8192379)
chr7 (63-164)||(23613182-23613283)
chr7 (63-164)||(36876349-36876450)
chr7 (63-164)||(48346409-48346510)
chr7 (63-164)||(48352793-48352894)
chr7 (63-164)||(8141775-8141876)
chr7 (28-163)||(22853507-22853642)
chr7 (72-162)||(1947980-1948070)
chr7 (28-163)||(39433693-39433828)
chr7 (28-137)||(37026538-37026647)
chr7 (116-164)||(45434370-45434418)
[»] chr2 (20 HSPs)
chr2 (27-164)||(16816627-16816764)
chr2 (27-164)||(16855784-16855921)
chr2 (28-164)||(21341230-21341367)
chr2 (28-127)||(11909269-11909369)
chr2 (28-137)||(21067218-21067328)
chr2 (28-164)||(2020738-2020874)
chr2 (28-164)||(15853344-15853480)
chr2 (28-164)||(36781474-36781610)
chr2 (28-164)||(42930672-42930807)
chr2 (63-164)||(2158417-2158518)
chr2 (63-164)||(2164833-2164934)
chr2 (63-164)||(29485689-29485790)
chr2 (63-164)||(34834127-34834228)
chr2 (63-164)||(34840571-34840672)
chr2 (63-164)||(45012789-45012890)
chr2 (63-164)||(12951604-12951705)
chr2 (63-164)||(43268654-43268755)
chr2 (28-128)||(13901253-13901353)
chr2 (98-135)||(36781448-36781485)
chr2 (98-135)||(42930646-42930683)
[»] scaffold0060 (1 HSPs)
scaffold0060 (28-137)||(15980-16090)
[»] scaffold0510 (3 HSPs)
scaffold0510 (28-164)||(8182-8318)
scaffold0510 (63-164)||(1818-1919)
scaffold0510 (98-135)||(1943-1980)
[»] scaffold0053 (2 HSPs)
scaffold0053 (50-164)||(71232-71346)
scaffold0053 (63-164)||(50496-50597)
[»] scaffold0513 (1 HSPs)
scaffold0513 (63-164)||(11471-11572)
[»] scaffold0043 (1 HSPs)
scaffold0043 (63-164)||(4320-4421)
[»] scaffold0475 (1 HSPs)
scaffold0475 (63-137)||(8614-8688)
[»] scaffold0202 (1 HSPs)
scaffold0202 (78-135)||(6921-6978)
[»] scaffold0343 (1 HSPs)
scaffold0343 (106-162)||(3442-3498)


Alignment Details
Target: chr6 (Bit Score: 293; Significance: 1e-164; HSPs: 24)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 216 - 567
Target Start/End: Complemental strand, 16530454 - 16530102
Alignment:
Q  216 ggctactcaagatatccaccatatatacaccctcgaagaccagttcgaccgcctccctaattaagatgtaagtgttaaggatgcagcaacgtataattgt 315  Q
    ||||||||||||| ||||||| ||||| |||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| |    
T  16530454 ggctactcaagatttccaccacatataaaccctcgaaggccagttcgaccgcctccctaattaagatgtaagtgttaagaatgcagcagcgtataattat 16530355  T
Q  316 actcaaatcttagctaattagtgtcttatttatatgtttggatggttatttatttt-ctttcttatgatgtagcctttgtttttgtatcccggtgcttat 414  Q
    ||||||||||||| ||||||||||||||||||||||||||||| ||||||| |||| ||||||||||||||| |||||||||||||||||||||||||||    
T  16530354 actcaaatcttagttaattagtgtcttatttatatgtttggatcgttatttgtttttctttcttatgatgtaacctttgtttttgtatcccggtgcttat 16530255  T
Q  415 agtaccaagtttttgtctccctttaattaattaattgtacttgtaaaataaaggaaaatatttcatatacattcaatatttattctacaatttgagagag 514  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||    
T  16530254 agtaccaagtttttgtctccctttaattaattaattgtacttgtaaaataaaggaaaatatttcctatacatccaatatttattctacaatttgagagag 16530155  T
Q  515 aaaggaacagaattggtgatctaatagacgtgatatgtttgtgtaagctcaat 567  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16530154 aaaggaacagaattggtgatctaatagacgtgatatgtttgtgtaagctcaat 16530102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 28 - 159
Target Start/End: Original strand, 1166780 - 1166912
Alignment:
Q  28 gcgaggcgagttacggcggctaaa-ctcctcagaggtgacgtgacacaaacccactgatgaagtaacctcaactcgccatggcgaatgaagttactcgcg 126  Q
    ||||||||||||| |||||||||| |||||||||||||||||| ||||||||||||| ||||| ||||||||||||||| || |||||||| ||||||||    
T  1166780 gcgaggcgagttagggcggctaaaactcctcagaggtgacgtgtcacaaacccactggtgaagaaacctcaactcgccaaggtgaatgaagctactcgcg 1166879  T
Q  127 aggcgagttgaggtagaataagaagtctataaa 159  Q
    ||||||||||| | |||  || |||||||||||    
T  1166880 aggcgagttgatggagataaaaaagtctataaa 1166912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 564 - 629
Target Start/End: Complemental strand, 16530167 - 16530102
Alignment:
Q  564 caatttgagagagaaaggaacacaattagtgatctaatagacgtgataagtttgtgtaagctcaat 629  Q
    |||||||||||||||||||||| |||| |||||||||||||||||||| |||||||||||||||||    
T  16530167 caatttgagagagaaaggaacagaattggtgatctaatagacgtgatatgtttgtgtaagctcaat 16530102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 63 - 164
Target Start/End: Original strand, 7061830 - 7061931
Alignment:
Q  63 tgacgtgacacaaacccactgatgaagtaacctcaactcgccatggcgaatgaagttactcgcgaggcgagttgaggtagaataagaagtctataaatag 162  Q
    ||||||| |||||||||| ||  |||| ||| ||||||||||||||||||||||||  ||||||||||||||||| | ||| | |||| |||||||||||    
T  7061830 tgacgtggcacaaacccaatggggaagaaacttcaactcgccatggcgaatgaagtagctcgcgaggcgagttgatgcagagtcagaattctataaatag 7061929  T
Q  163 cc 164  Q
    ||    
T  7061930 cc 7061931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 63 - 164
Target Start/End: Original strand, 7069016 - 7069117
Alignment:
Q  63 tgacgtgacacaaacccactgatgaagtaacctcaactcgccatggcgaatgaagttactcgcgaggcgagttgaggtagaataagaagtctataaatag 162  Q
    ||||||| |||||||||| ||  |||| ||| ||||||||||||||||||||||||  ||||||||||||||||| | ||| | |||| |||||||||||    
T  7069016 tgacgtggcacaaacccaatggggaagaaacttcaactcgccatggcgaatgaagtagctcgcgaggcgagttgatgcagagtcagaattctataaatag 7069115  T
Q  163 cc 164  Q
    ||    
T  7069116 cc 7069117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 63 - 164
Target Start/End: Original strand, 9864088 - 9864189
Alignment:
Q  63 tgacgtgacacaaacccactgatgaagtaacctcaactcgccatggcgaatgaagttactcgcgaggcgagttgaggtagaataagaagtctataaatag 162  Q
    ||||||| |||||||||| ||  |||| ||| |||||||||||||||||||||||   |||||||||||||| || | ||||| |||| |||||||||||    
T  9864088 tgacgtggcacaaacccaatggggaagaaacttcaactcgccatggcgaatgaaggagctcgcgaggcgagtagatgcagaatcagaattctataaatag 9864187  T
Q  163 cc 164  Q
    ||    
T  9864188 cc 9864189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 63 - 164
Target Start/End: Original strand, 31128614 - 31128715
Alignment:
Q  63 tgacgtgacacaaacccactgatgaagtaacctcaactcgccatggcgaatgaagttactcgcgaggcgagttgaggtagaataagaagtctataaatag 162  Q
    ||||||| |||||||||| ||  |||| ||| |||||||||||||||||| |||||  ||||||||||||||||| | ||| | |||| |||||||||||    
T  31128614 tgacgtggcacaaacccaatggggaagaaacttcaactcgccatggcgaaggaagtagctcgcgaggcgagttgatgcagagtcagaattctataaatag 31128713  T
Q  163 cc 164  Q
    ||    
T  31128714 cc 31128715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 63 - 164
Target Start/End: Original strand, 34710884 - 34710985
Alignment:
Q  63 tgacgtgacacaaacccactgatgaagtaacctcaactcgccatggcgaatgaagttactcgcgaggcgagttgaggtagaataagaagtctataaatag 162  Q
    ||||||| |||||||||| ||  |||| ||||||||||||||||||||||||||    ||||||||||||||||| | ||| | |||| |||||||||||    
T  34710884 tgacgtggcacaaacccaatggcgaaggaacctcaactcgccatggcgaatgaatgagctcgcgaggcgagttgatgcagagtcagaattctataaatag 34710983  T
Q  163 cc 164  Q
    ||    
T  34710984 cc 34710985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 28 - 164
Target Start/End: Original strand, 4737671 - 4737807
Alignment:
Q  28 gcgaggcgagttacggcggctaaactcctcagaggtgacgtgacacaaacccactgatgaagtaacctcaactcgccatggcgaatgaagttactcgcga 127  Q
    ||||||||||||| ||||| | | |  |||| || ||||||| |||||||||| ||  |||| ||||||||||||||||||||||||||    |||||||    
T  4737671 gcgaggcgagttagggcggtttagcctctcacagctgacgtggcacaaacccaatggcgaaggaacctcaactcgccatggcgaatgaatgagctcgcga 4737770  T
Q  128 ggcgagttgaggtagaataagaagtctataaatagcc 164  Q
    |||||||||| | ||| | |||| | |||||||||||    
T  4737771 ggcgagttgatgcagagtcagaattatataaatagcc 4737807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 634 - 678
Target Start/End: Complemental strand, 16530077 - 16530033
Alignment:
Q  634 ggaacaatatctacttttagaggagaatcctcgaacatgatgatg 678  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  16530077 ggaacaatatctacttttagaggagaatcctcgaacatgatgatg 16530033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 63 - 164
Target Start/End: Original strand, 1427738 - 1427839
Alignment:
Q  63 tgacgtgacacaaacccactgatgaagtaacctcaactcgccatggcgaatgaagttactcgcgaggcgagttgaggtagaataagaagtctataaatag 162  Q
    ||||||| |||||||||| ||  |||| ||| |||||||||||||||||||||||   ||||||||||||||  ||| ||| | |||| |||||||||||    
T  1427738 tgacgtggcacaaacccaatggggaagaaacttcaactcgccatggcgaatgaagcagctcgcgaggcgagtgaaggcagactcagaattctataaatag 1427837  T
Q  163 cc 164  Q
    ||    
T  1427838 cc 1427839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 63 - 164
Target Start/End: Original strand, 4019550 - 4019651
Alignment:
Q  63 tgacgtgacacaaacccactgatgaagtaacctcaactcgccatggcgaatgaagttactcgcgaggcgagttgaggtagaataagaagtctataaatag 162  Q
    ||||||| |||||||||| ||  |||| ||| |||||||||||||||||||||||   ||||||||||||||  ||| ||| | |||| |||||||||||    
T  4019550 tgacgtggcacaaacccaatggggaagaaacttcaactcgccatggcgaatgaagcagctcgcgaggcgagtgaaggcagactcagaattctataaatag 4019649  T
Q  163 cc 164  Q
    ||    
T  4019650 cc 4019651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 63 - 164
Target Start/End: Original strand, 4025976 - 4026077
Alignment:
Q  63 tgacgtgacacaaacccactgatgaagtaacctcaactcgccatggcgaatgaagttactcgcgaggcgagttgaggtagaataagaagtctataaatag 162  Q
    ||||||| |||||||||| ||  |||| ||| |||||||||||||||||||||||   ||||||||||||||  ||| ||| | |||| |||||||||||    
T  4025976 tgacgtggcacaaacccaatggggaagaaacttcaactcgccatggcgaatgaagcagctcgcgaggcgagtgaaggcagactcagaattctataaatag 4026075  T
Q  163 cc 164  Q
    ||    
T  4026076 cc 4026077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 63 - 164
Target Start/End: Original strand, 4717855 - 4717956
Alignment:
Q  63 tgacgtgacacaaacccactgatgaagtaacctcaactcgccatggcgaatgaagttactcgcgaggcgagttgaggtagaataagaagtctataaatag 162  Q
    ||||||| |||||||||| ||  |||| ||| |||||||||||||||||||||||   ||||||||||||||  ||| ||| | |||| |||||||||||    
T  4717855 tgacgtggcacaaacccaatggggaagaaacttcaactcgccatggcgaatgaagcagctcgcgaggcgagtgaaggcagactcagaattctataaatag 4717954  T
Q  163 cc 164  Q
    ||    
T  4717955 cc 4717956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 63 - 164
Target Start/End: Original strand, 32327808 - 32327909
Alignment:
Q  63 tgacgtgacacaaacccactgatgaagtaacctcaactcgccatggcgaatgaagttactcgcgaggcgagttgaggtagaataagaagtctataaatag 162  Q
    ||||||| |||||||||| ||  |||| ||||||||||||||||||||||||||    ||||||||||||||||| | ||| | |||| | |||||||||    
T  32327808 tgacgtggcacaaacccaatggcgaaggaacctcaactcgccatggcgaatgaatgagctcgcgaggcgagttgatgcagagtcagaattgtataaatag 32327907  T
Q  163 cc 164  Q
    ||    
T  32327908 cc 32327909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 28 - 164
Target Start/End: Complemental strand, 4187627 - 4187491
Alignment:
Q  28 gcgaggcgagttacggcggctaaactcctcagaggtgacgtgacacaaacccactgatgaagtaacctcaactcgccatggcgaatgaagttactcgcga 127  Q
    ||||||||||||| ||||| | | |  |||| || ||||||| |||||||||| ||  |||| ||| |||||||||||||| ||||||||   |||||||    
T  4187627 gcgaggcgagttagggcggtttagcctctcacagctgacgtggcacaaacccaatggcgaaggaacttcaactcgccatggtgaatgaaggagctcgcga 4187528  T
Q  128 ggcgagttgaggtagaataagaagtctataaatagcc 164  Q
    ||||||||  |  ||||| |||| |||||||||||||    
T  4187527 ggcgagttaggacagaatcagaattctataaatagcc 4187491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 28 - 163
Target Start/End: Original strand, 13671105 - 13671241
Alignment:
Q  28 gcgaggcgagttacggcggctaaa-ctcctcagaggtgacgtgacacaaacccactgatgaagtaacctcaactcgccatggcgaatgaagttactcgcg 126  Q
    ||||||||||||| ||||| | || || ||||| | ||||||| |||||||||| || ||||| ||| ||||||||||||| |||||||||   |||| |    
T  13671105 gcgaggcgagttagggcggtttaagcttctcagtgatgacgtggcacaaacccaatggtgaaggaacttcaactcgccatgacgaatgaaggagctcggg 13671204  T
Q  127 aggcgagttgaggtagaataagaagtctataaatagc 163  Q
    |||||||| || | ||| | |||| ||||||||||||    
T  13671205 aggcgagtggatgcagatttagaattctataaatagc 13671241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 28 - 164
Target Start/End: Complemental strand, 31548837 - 31548701
Alignment:
Q  28 gcgaggcgagttacggcggctaaactcctcagaggtgacgtgacacaaacccactgatgaagtaacctcaactcgccatggcgaatgaagttactcgcga 127  Q
    ||||||||||||| ||||| | | |  |||| || ||||||| |||||||||| ||  |||| ||||||||||||||||||||||||||    | |||||    
T  31548837 gcgaggcgagttagggcggtttagcctctcacagctgacgtggcacaaacccaatggcgaaggaacctcaactcgccatggcgaatgaatgagcccgcga 31548738  T
Q  128 ggcgagttgaggtagaataagaagtctataaatagcc 164  Q
    |||||||||| | ||| | |||| | |||||||||||    
T  31548737 ggcgagttgatgcagagtcagaattgtataaatagcc 31548701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 63 - 137
Target Start/End: Original strand, 4668723 - 4668797
Alignment:
Q  63 tgacgtgacacaaacccactgatgaagtaacctcaactcgccatggcgaatgaagttactcgcgaggcgagttga 137  Q
    ||||||| |||||||||| ||  |||| ||||||||||||||||||||||||||    |||||||||||||||||    
T  4668723 tgacgtggcacaaacccaatggcgaaggaacctcaactcgccatggcgaatgaatgagctcgcgaggcgagttga 4668797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 63 - 164
Target Start/End: Complemental strand, 34649707 - 34649606
Alignment:
Q  63 tgacgtgacacaaacccactgatgaagtaacctcaactcgccatggcgaatgaagttactcgcgaggcgagttgaggtagaataagaagtctataaatag 162  Q
    ||||||| |||||||||| ||  |||| ||| ||||||| |||||||||||||||   ||||||||||||||  ||| ||| | |||| |||||||||||    
T  34649707 tgacgtggcacaaacccaatggggaagaaacttcaactcaccatggcgaatgaagcagctcgcgaggcgagtgaaggcagactcagaattctataaatag 34649608  T
Q  163 cc 164  Q
    ||    
T  34649607 cc 34649606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 63 - 164
Target Start/End: Complemental strand, 34656158 - 34656057
Alignment:
Q  63 tgacgtgacacaaacccactgatgaagtaacctcaactcgccatggcgaatgaagttactcgcgaggcgagttgaggtagaataagaagtctataaatag 162  Q
    ||||||| |||||||||| ||   ||| ||| |||||||||||||||||||||||   ||||||||||||||  ||| ||| | |||| |||||||||||    
T  34656158 tgacgtggcacaaacccaatgggaaagaaacttcaactcgccatggcgaatgaagcagctcgcgaggcgagtgaaggcagactcagaattctataaatag 34656059  T
Q  163 cc 164  Q
    ||    
T  34656058 cc 34656057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 28 - 111
Target Start/End: Complemental strand, 9847422 - 9847338
Alignment:
Q  28 gcgaggcgagttacggcggctaaa-ctcctcagaggtgacgtgacacaaacccactgatgaagtaacctcaactcgccatggcga 111  Q
    |||||||||| || |||||||||| || |||| || | ||||| || |||||||||||||||| ||| |||||||| ||||||||    
T  9847422 gcgaggcgagctaaggcggctaaaacttctcaaagctaacgtggcagaaacccactgatgaagaaacatcaactcgtcatggcga 9847338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 63 - 163
Target Start/End: Complemental strand, 27670936 - 27670837
Alignment:
Q  63 tgacgtgacacaaacccactgatgaagtaacctcaactcgccatggcgaatgaagttactcgcgaggcgagttgaggtagaataagaagtctataaatag 162  Q
    ||||||| |||||||||| || ||||| ||| ||| |||||| ||||||||||||   |||||||| ||| |||| | ||||| |||| |||||||||||    
T  27670936 tgacgtggcacaaacccaatggtgaaggaacttca-ctcgccctggcgaatgaaggagctcgcgagacgatttgatgcagaattagaattctataaatag 27670838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 28 - 164
Target Start/End: Original strand, 21261863 - 21262000
Alignment:
Q  28 gcgaggcgagttacggcggct-aaactcctcagaggtgacgtgacacaaacccactgatgaagtaacctcaactcgccatggcgaatgaagttactcgcg 126  Q
    ||||||||||||| ||||| | ||||| ||||  | ||||||| || ||||||| || ||||| ||| |||  ||||||||||||||||||   ||||||    
T  21261863 gcgaggcgagttagggcggtttaaacttctcactgatgacgtggcataaacccaatggtgaaggaacttcatttcgccatggcgaatgaaggagctcgcg 21261962  T
Q  127 aggcgagttgaggtagaataagaagtctataaatagcc 164  Q
    ||||| || ||   ||| | |||| |||||||||||||    
T  21261963 aggcgggtggatacagatttagaaatctataaatagcc 21262000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 108; Significance: 7e-54; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 108; E-Value: 7e-54
Query Start/End: Original strand, 17 - 180
Target Start/End: Original strand, 36754086 - 36754249
Alignment:
Q  17 tgatattacctgcgaggcgagttacggcggctaaactcctcagaggtgacgtgacacaaacccactgatgaagtaacctcaactcgccatggcgaatgaa 116  Q
    ||||||||||  ||||||||||||  ||||||| ||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||    
T  36754086 tgatattacccacgaggcgagttagagcggctatactcctcagaggtgacgtggcacaaacccactggtgaagtaacctcaactcgccatggcgaatgaa 36754185  T
Q  117 gttactcgcgaggcgagttgaggtagaataagaagtctataaatagccacttgataatttcata 180  Q
    ||||||| ||||||||||||||| |||| | ||| |||||||||||||||||||  ||||||||    
T  36754186 gttactcacgaggcgagttgaggcagaacaggaattctataaatagccacttgaccatttcata 36754249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 33 - 161
Target Start/End: Complemental strand, 7781250 - 7781122
Alignment:
Q  33 gcgagttacggcggctaaactcctcagaggtgacgtgacacaaacccactgatgaagtaacctcaactcgccatggcgaatgaagttactcgcgaggcga 132  Q
    |||||||| ||||| | ||||| ||| || ||||||| |||||||||| || ||||| |||||||||||||||||||||||||||   |||| |||||||    
T  7781250 gcgagttagggcggtttaactcttcacagatgacgtggcacaaacccaatggtgaaggaacctcaactcgccatggcgaatgaaggagctcgtgaggcga 7781151  T
Q  133 gttgaggtagaataagaagtctataaata 161  Q
    ||||| | ||||| |||| ||||||||||    
T  7781150 gttgatgcagaatcagaattctataaata 7781122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 28 - 137
Target Start/End: Original strand, 5659823 - 5659933
Alignment:
Q  28 gcgaggcgagttacggcggctaaa-ctcctcagaggtgacgtgacacaaacccactgatgaagtaacctcaactcgccatggcgaatgaagttactcgcg 126  Q
    ||||||||||||| || ||| ||| ||||||| | |||||||| |||||||| |||| ||||| ||||| ||||||||| ||| ||||||||||||||||    
T  5659823 gcgaggcgagttagggtggccaaaactcctcaaaagtgacgtggcacaaacctactggtgaaggaaccttaactcgccaaggcaaatgaagttactcgcg 5659922  T
Q  127 aggcgagttga 137  Q
    |||||||||||    
T  5659923 aggcgagttga 5659933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 28 - 164
Target Start/End: Complemental strand, 8104811 - 8104675
Alignment:
Q  28 gcgaggcgagttacggcggctaaactcctcagaggtgacgtgacacaaacccactgatgaagtaacctcaactcgccatggcgaatgaagttactcgcga 127  Q
    ||||||||||||| ||||| | | |  |||| || ||||||| |||||||||| ||  |||| |||||||||||||||||||||||||||   |||||||    
T  8104811 gcgaggcgagttagggcggtttagcctctcacagctgacgtggcacaaacccaatggcgaaggaacctcaactcgccatggcgaatgaaggagctcgcga 8104712  T
Q  128 ggcgagttgaggtagaataagaagtctataaatagcc 164  Q
    ||||||| || | ||||| |||| |||||||||||||    
T  8104711 ggcgagtagatgcagaatcagaattctataaatagcc 8104675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 28 - 164
Target Start/End: Complemental strand, 13595038 - 13594902
Alignment:
Q  28 gcgaggcgagttacggcggctaaactcctcagaggtgacgtgacacaaacccactgatgaagtaacctcaactcgccatggcgaatgaagttactcgcga 127  Q
    ||||||||||||| ||||| | | |  |||| || ||||||| |||||||||| ||  |||| |||||||||||||||||||||||||||   |||||||    
T  13595038 gcgaggcgagttagggcggtttagcctctcacagctgacgtggcacaaacccaatggcgaaggaacctcaactcgccatggcgaatgaaggagctcgcga 13594939  T
Q  128 ggcgagttgaggtagaataagaagtctataaatagcc 164  Q
    ||||||| || | ||||| |||| |||||||||||||    
T  13594938 ggcgagtagatgcagaatcagaattctataaatagcc 13594902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 28 - 164
Target Start/End: Original strand, 55462064 - 55462200
Alignment:
Q  28 gcgaggcgagttacggcggctaaactcctcagaggtgacgtgacacaaacccactgatgaagtaacctcaactcgccatggcgaatgaagttactcgcga 127  Q
    ||||||||||||| ||||| | | |  |||| || ||||||| |||||||||| ||  |||| |||||||||||||||||||||||||||   |||||||    
T  55462064 gcgaggcgagttagggcggtttagcctctcacagctgacgtggcacaaacccaatggcgaaggaacctcaactcgccatggcgaatgaaggagctcgcga 55462163  T
Q  128 ggcgagttgaggtagaataagaagtctataaatagcc 164  Q
    ||||||| || | ||||| |||| |||||||||||||    
T  55462164 ggcgagtagatgcagaatcagaattctataaatagcc 55462200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 32 - 137
Target Start/End: Original strand, 30210841 - 30210947
Alignment:
Q  32 ggcgagttacggcggc-taaactcctcagaggtgacgtgacacaaacccactgatgaagtaacctcaactcgccatggcgaatgaagttactcgcgaggc 130  Q
    ||||||||| |||||| || |||||||| || ||||||| |||||||| |||| ||||| ||| | |||||||||||||||||||||  |||||||||||    
T  30210841 ggcgagttagggcggcctagactcctcacagatgacgtggcacaaacctactggtgaaggaacttaaactcgccatggcgaatgaaggaactcgcgaggc 30210940  T
Q  131 gagttga 137  Q
    |||||||    
T  30210941 gagttga 30210947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 28 - 164
Target Start/End: Complemental strand, 27591241 - 27591105
Alignment:
Q  28 gcgaggcgagttacggcggctaaactcctcagaggtgacgtgacacaaacccactgatgaagtaacctcaactcgccatggcgaatgaagttactcgcga 127  Q
    ||||||||||||| ||||| | | |  |||| || ||||||| |||||||||| ||  |||| ||||||||||||||||||||||||||    |||||||    
T  27591241 gcgaggcgagttagggcggtttagcctctcacagctgacgtggcacaaacccaatggcgaaggaacctcaactcgccatggcgaatgaatgagctcgcga 27591142  T
Q  128 ggcgagttgaggtagaataagaagtctataaatagcc 164  Q
    |||||||||| | ||| | |||| | |||||||||||    
T  27591141 ggcgagttgatgcagagtcagaattgtataaatagcc 27591105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 28 - 164
Target Start/End: Original strand, 37367602 - 37367738
Alignment:
Q  28 gcgaggcgagttacggcggctaaactcctcagaggtgacgtgacacaaacccactgatgaagtaacctcaactcgccatggcgaatgaagttactcgcga 127  Q
    ||||||||||||| ||||| | | |  |||| || ||||||| |||||||||| ||  |||| ||||||||||||||||||||||||||    |||||||    
T  37367602 gcgaggcgagttagggcggtttagcctctcacagctgacgtggcacaaacccaatggcgaaggaacctcaactcgccatggcgaatgaatgagctcgcga 37367701  T
Q  128 ggcgagttgaggtagaataagaagtctataaatagcc 164  Q
    |||||||||| | ||| | |||| | |||||||||||    
T  37367702 ggcgagttgatgcagagtcagaattgtataaatagcc 37367738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 63 - 164
Target Start/End: Complemental strand, 17457751 - 17457650
Alignment:
Q  63 tgacgtgacacaaacccactgatgaagtaacctcaactcgccatggcgaatgaagttactcgcgaggcgagttgaggtagaataagaagtctataaatag 162  Q
    ||||||| |||||||||| ||  |||| ||||||||||||||||||||||||||    ||||||||||||||||| | ||| | |||| | |||||||||    
T  17457751 tgacgtggcacaaacccaatggcgaaggaacctcaactcgccatggcgaatgaatgagctcgcgaggcgagttgatgcagagtcagaattgtataaatag 17457652  T
Q  163 cc 164  Q
    ||    
T  17457651 cc 17457650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 63 - 164
Target Start/End: Complemental strand, 30239121 - 30239020
Alignment:
Q  63 tgacgtgacacaaacccactgatgaagtaacctcaactcgccatggcgaatgaagttactcgcgaggcgagttgaggtagaataagaagtctataaatag 162  Q
    ||||||| |||||||||| ||  |||| ||||||||||||||||||||||||||    ||||||||||||||||| | ||| |  ||| |||||||||||    
T  30239121 tgacgtggcacaaacccaatggcgaaggaacctcaactcgccatggcgaatgaatgagctcgcgaggcgagttgatgcagagtcggaattctataaatag 30239022  T
Q  163 cc 164  Q
    ||    
T  30239021 cc 30239020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 63 - 163
Target Start/End: Complemental strand, 16406240 - 16406140
Alignment:
Q  63 tgacgtgacacaaacccactgatgaagtaacctcaactcgccatggcgaatgaagttactcgcgaggcgagttgaggtagaataagaagtctataaatag 162  Q
    ||||||| |||||||||| || ||||| ||| |||||||||||||||||||||||   |||||||||||||| || | | | | |||| |||||||||||    
T  16406240 tgacgtggcacaaacccaatggtgaaggaacttcaactcgccatggcgaatgaagaagctcgcgaggcgagtggatgcaaatttagaattctataaatag 16406141  T
Q  163 c 163  Q
    |    
T  16406140 c 16406140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 63 - 164
Target Start/End: Complemental strand, 41373893 - 41373792
Alignment:
Q  63 tgacgtgacacaaacccactgatgaagtaacctcaactcgccatggcgaatgaagttactcgcgaggcgagttgaggtagaataagaagtctataaatag 162  Q
    ||||||| |||||||||| ||  |||| ||| ||||||||||| |||||||||||   ||||||||||||||  ||| ||| | |||| |||||||||||    
T  41373893 tgacgtggcacaaacccaatggggaagaaacttcaactcgccacggcgaatgaagcagctcgcgaggcgagtgaaggcagactcagaattctataaatag 41373794  T
Q  163 cc 164  Q
    ||    
T  41373793 cc 41373792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 73 - 164
Target Start/End: Original strand, 37355672 - 37355763
Alignment:
Q  73 caaacccactgatgaagtaacctcaactcgccatggcgaatgaagttactcgcgaggcgagttgaggtagaataagaagtctataaatagcc 164  Q
    |||||||| ||  |||| ||| ||||||||||||||||||||||||  ||||||||||||||  | | ||| | |||| |||||||||||||    
T  37355672 caaacccaatggggaagaaacttcaactcgccatggcgaatgaagtagctcgcgaggcgagtgaatgcagactcagaattctataaatagcc 37355763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 49 - 111
Target Start/End: Original strand, 52182510 - 52182572
Alignment:
Q  49 aaactcctcagaggtgacgtgacacaaacccactgatgaagtaacctcaactcgccatggcga 111  Q
    ||||||||||||| |||| || || |||||||||| ||||| ||| ||||||| |||||||||    
T  52182510 aaactcctcagagctgacatggcagaaacccactggtgaagaaacatcaactcaccatggcga 52182572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 98 - 135
Target Start/End: Complemental strand, 8104837 - 8104800
Alignment:
Q  98 actcgccatggcgaatgaagttactcgcgaggcgagtt 135  Q
    ||||||||||||||||||  ||||||||||||||||||    
T  8104837 actcgccatggcgaatgattttactcgcgaggcgagtt 8104800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 98 - 135
Target Start/End: Complemental strand, 13595064 - 13595027
Alignment:
Q  98 actcgccatggcgaatgaagttactcgcgaggcgagtt 135  Q
    ||||||||||||||||||  ||||||||||||||||||    
T  13595064 actcgccatggcgaatgattttactcgcgaggcgagtt 13595027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 93; Significance: 6e-45; HSPs: 25)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 17 - 165
Target Start/End: Complemental strand, 44917332 - 44917184
Alignment:
Q  17 tgatattacctgcgaggcgagttacggcggctaaactcctcagaggtgacgtgacacaaacccactgatgaagtaacctcaactcgccatggcgaatgaa 116  Q
    |||||||||| |||||| |||||| ||||||||||||||| |||||||| ||| ||||| ||||||| |||||||||||||||||||||||| |||||||    
T  44917332 tgatattacccgcgaggtgagttagggcggctaaactccttagaggtgatgtggcacaatcccactggtgaagtaacctcaactcgccatggagaatgaa 44917233  T
Q  117 gttactcgcgaggcgagttgaggtagaataagaagtctataaatagcca 165  Q
    ||||||||||||||||||||||| |||| || |  ||||||||||||||    
T  44917232 gttactcgcgaggcgagttgaggcagaacaatacttctataaatagcca 44917184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 27 - 164
Target Start/End: Complemental strand, 1175525 - 1175388
Alignment:
Q  27 tgcgaggcgagttacggcggctaaactcctcagaggtgacgtgacacaaacccactgatgaagtaacctcaactcgccatggcgaatgaagttactcgcg 126  Q
    |||||||||||||| |||||   ||||| ||| || ||||||| |||||||||| || ||||| |||||||||||||||||||||||||||   ||||||    
T  1175525 tgcgaggcgagttagggcggtctaactcttcacagatgacgtggcacaaacccaatggtgaaggaacctcaactcgccatggcgaatgaaggagctcgcg 1175426  T
Q  127 aggcgagttgaggtagaataagaagtctataaatagcc 164  Q
    ||||||||| | | ||||| |||| |||||||||||||    
T  1175425 aggcgagttcatgcagaatcagaattctataaatagcc 1175388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 28 - 164
Target Start/End: Complemental strand, 31073271 - 31073134
Alignment:
Q  28 gcgaggcgagttacggcggc-taaactcctcagaggtgacgtgacacaaacccactgatgaagtaacctcaactcgccatggcgaatgaagttactcgcg 126  Q
    ||||||||||||| |||||| |||||||||||  ||||||||| | |||||  | || ||||| ||| |||||||||||||||||||| ||||||||| |    
T  31073271 gcgaggcgagttagggcggcctaaactcctcaagggtgacgtggctcaaacttaatggtgaagaaacatcaactcgccatggcgaatggagttactcgtg 31073172  T
Q  127 aggcgagttgaggtagaataagaagtctataaatagcc 164  Q
    ||||||||||| | ||| |||||| |||||||||||||    
T  31073171 aggcgagttgatgcagattaagaaatctataaatagcc 31073134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 17 - 164
Target Start/End: Complemental strand, 23252287 - 23252139
Alignment:
Q  17 tgatattacctgcgaggcgagttacggcggc-taaactcctcagaggtgacgtgacacaaacccactgatgaagtaacctcaactcgccatggcgaatga 115  Q
    |||||||||  ||||||||||||| |||||| ||||||||| |||||||||||| | ||||   | || ||||| ||| ||||||||||| ||||||||     
T  23252287 tgatattactcgcgaggcgagttagggcggcctaaactccttagaggtgacgtggctcaaaattaatggtgaagaaacttcaactcgccaaggcgaatgg 23252188  T
Q  116 agttactcgcgaggcgagttgaggtagaataagaagtctataaatagcc 164  Q
     |||||||||||| |||||||||| |||| ||||| |||||||||||||    
T  23252187 tgttactcgcgagacgagttgaggcagaacaagaattctataaatagcc 23252139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 28 - 164
Target Start/End: Complemental strand, 28996937 - 28996801
Alignment:
Q  28 gcgaggcgagttacggcggctaaactcctcagaggtgacgtgacacaaacccactgatgaagtaacctcaactcgccatggcgaatgaagttactcgcga 127  Q
    ||||||||||| | ||||| | ||||| ||| || ||||||| |||||||||| || ||||| ||| |||||||||||||||||||||||   |||||||    
T  28996937 gcgaggcgagtgagggcggtttaactcttcacagatgacgtggcacaaacccaatggtgaaggaacttcaactcgccatggcgaatgaaggagctcgcga 28996838  T
Q  128 ggcgagttgaggtagaataagaagtctataaatagcc 164  Q
    |||||||||| | ||||| |||| |||||||||||||    
T  28996837 ggcgagttgatgcagaatcagaattctataaatagcc 28996801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 28 - 164
Target Start/End: Complemental strand, 29002653 - 29002517
Alignment:
Q  28 gcgaggcgagttacggcggctaaactcctcagaggtgacgtgacacaaacccactgatgaagtaacctcaactcgccatggcgaatgaagttactcgcga 127  Q
    ||||||||||| | ||||| | ||||| ||| || ||||||| |||||||||| || ||||| |||  ||||||||||||||||||||||   |||||||    
T  29002653 gcgaggcgagtgagggcggtttaactcttcacagatgacgtggcacaaacccaatggtgaaggaactccaactcgccatggcgaatgaaggagctcgcga 29002554  T
Q  128 ggcgagttgaggtagaataagaagtctataaatagcc 164  Q
    |||||||||| | ||||| |||| |||||||||||||    
T  29002553 ggcgagttgatgcagaatcagaattctataaatagcc 29002517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 28 - 164
Target Start/End: Complemental strand, 26622391 - 26622255
Alignment:
Q  28 gcgaggcgagttacggcggctaaactcctcagaggtgacgtgacacaaacccactgatgaagtaacctcaactcgccatggcgaatgaagttactcgcga 127  Q
    |||||| |||||| |||||   ||||| ||| || ||||||| |||||||||| || ||||| ||||||||||| |||||||||||||||   |||||||    
T  26622391 gcgaggtgagttagggcggtctaactcttcacagatgacgtggcacaaacccaatggtgaaggaacctcaactcaccatggcgaatgaaggagctcgcga 26622292  T
Q  128 ggcgagttgaggtagaataagaagtctataaatagcc 164  Q
    |||||||| | | ||||| |||| |||||||||||||    
T  26622291 ggcgagttcatgcagaatcagaattctataaatagcc 26622255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 28 - 164
Target Start/End: Original strand, 41304821 - 41304957
Alignment:
Q  28 gcgaggcgagttacggcggctaaactcctcagaggtgacgtgacacaaacccactgatgaagtaacctcaactcgccatggcgaatgaagttactcgcga 127  Q
    |||||| |||||| ||||| | ||||| ||| || ||| ||| |||||||||| || ||||| |||||||||||||||||||||||||||   |||||||    
T  41304821 gcgaggggagttagggcggtttaactcttcacagatgatgtggcacaaacccaatggtgaaggaacctcaactcgccatggcgaatgaaggagctcgcga 41304920  T
Q  128 ggcgagttgaggtagaataagaagtctataaatagcc 164  Q
    ||||| |||| |  |||| |||| |||||||||||||    
T  41304921 ggcgatttgatgctgaatcagaattctataaatagcc 41304957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 28 - 164
Target Start/End: Complemental strand, 45023465 - 45023329
Alignment:
Q  28 gcgaggcgagttacggcggctaaactcctcagaggtgacgtgacacaaacccactgatgaagtaacctcaactcgccatggcgaatgaagttactcgcga 127  Q
    ||||||||||||| ||||| | | |  |||| || ||||||| |||||||||| ||  |||| |||||||||||||||||||||||||||   |||||||    
T  45023465 gcgaggcgagttagggcggtttagcctctcacagctgacgtggcacaaacccaatggcgaaggaacctcaactcgccatggcgaatgaaggagctcgcga 45023366  T
Q  128 ggcgagttgaggtagaataagaagtctataaatagcc 164  Q
    ||||||| || | ||||| |||| |||||||||||||    
T  45023365 ggcgagtagatgcagaatcagaattctataaatagcc 45023329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 30 - 164
Target Start/End: Original strand, 11912565 - 11912699
Alignment:
Q  30 gaggcgagttacggcggc-taaactcctcagaggtgacgtgacacaaacccactgatgaagtaacctcaactcgccatggcgaatgaagttactcgcgag 128  Q
    ||||||||||| || ||| |||||||||||||||||||||| | ||||   | || ||||| ||| ||||||||||| ||||||||  ||||||||||||    
T  11912565 gaggcgagttagggtggcctaaactcctcagaggtgacgtggctcaaatttaatggtgaagaaacttcaactcgccaaggcgaatggtgttactcgcgag 11912664  T
Q  129 gcgagttgaggtagaataagaagtctataaatagcc 164  Q
    ||||||||||| |||| ||||| |||| ||||||||    
T  11912665 gcgagttgaggcagaacaagaa-tctagaaatagcc 11912699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 28 - 137
Target Start/End: Original strand, 1115284 - 1115394
Alignment:
Q  28 gcgaggcgagttacggcggc-taaactcctcagaggtgacgtgacacaaacccactgatgaagtaacctcaactcgccatggcgaatgaagttactcgcg 126  Q
    ||||||||||||| |||||| || |||||||| || ||||||| ||||||||||||  ||||| ||| | |||||||||||||||||||||   ||||||    
T  1115284 gcgaggcgagttagggcggcctagactcctcacagatgacgtggcacaaacccactagtgaaggaacttaaactcgccatggcgaatgaaggagctcgcg 1115383  T
Q  127 aggcgagttga 137  Q
    |||||||||||    
T  1115384 aggcgagttga 1115394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 71 - 163
Target Start/End: Complemental strand, 4600415 - 4600323
Alignment:
Q  71 cacaaacccactgatgaagtaacctcaactcgccatggcgaatgaagttactcgcgaggcgagttgaggtagaataagaagtctataaatagc 163  Q
    |||||||||| |||||||| ||| ||||||||||||||||||||||||  |||||||||||||| || ||||| | | || ||||||||||||    
T  4600415 cacaaacccaatgatgaaggaacttcaactcgccatggcgaatgaagtagctcgcgaggcgagtggatgtagatttataattctataaatagc 4600323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 105 - 180
Target Start/End: Complemental strand, 44917181 - 44917106
Alignment:
Q  105 atggcgaatgaagttactcgcgaggcgagttgaggtagaataagaagtctataaatagccacttgataatttcata 180  Q
    |||| |||||||||||||||||||||||||||||| |||| ||||  |||||||||||||| ||||| ||||||||    
T  44917181 atggagaatgaagttactcgcgaggcgagttgaggcagaacaagacttctataaatagccatttgatcatttcata 44917106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 63 - 164
Target Start/End: Original strand, 23761677 - 23761778
Alignment:
Q  63 tgacgtgacacaaacccactgatgaagtaacctcaactcgccatggcgaatgaagttactcgcgaggcgagttgaggtagaataagaagtctataaatag 162  Q
    ||||||| |||||||||| || ||||||||||||||||||||||||||||||||    |||||||||||||| || | ||| | | || |||||||||||    
T  23761677 tgacgtggcacaaacccaatggtgaagtaacctcaactcgccatggcgaatgaatgagctcgcgaggcgagtggatgcagagtcaaaattctataaatag 23761776  T
Q  163 cc 164  Q
    ||    
T  23761777 cc 23761778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 63 - 164
Target Start/End: Original strand, 39052633 - 39052734
Alignment:
Q  63 tgacgtgacacaaacccactgatgaagtaacctcaactcgccatggcgaatgaagttactcgcgaggcgagttgaggtagaataagaagtctataaatag 162  Q
    ||||||| |||||||||| ||  |||| ||| ||||||||||||||||||||||||  ||||||||||||||| ||| ||| | ||||  ||||||||||    
T  39052633 tgacgtggcacaaacccaatggggaagaaacttcaactcgccatggcgaatgaagtagctcgcgaggcgagttaaggcagactcagaatcctataaatag 39052732  T
Q  163 cc 164  Q
    ||    
T  39052733 cc 39052734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 63 - 164
Target Start/End: Original strand, 39059005 - 39059106
Alignment:
Q  63 tgacgtgacacaaacccactgatgaagtaacctcaactcgccatggcgaatgaagttactcgcgaggcgagttgaggtagaataagaagtctataaatag 162  Q
    ||||||| |||||||||| ||  |||| ||| ||||||||||||||||||||||||  ||||||||||||||| ||| ||| | ||||  ||||||||||    
T  39059005 tgacgtggcacaaacccaatggggaagaaacttcaactcgccatggcgaatgaagtagctcgcgaggcgagttaaggcagactcagaatcctataaatag 39059104  T
Q  163 cc 164  Q
    ||    
T  39059105 cc 39059106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 63 - 164
Target Start/End: Complemental strand, 43687526 - 43687425
Alignment:
Q  63 tgacgtgacacaaacccactgatgaagtaacctcaactcgccatggcgaatgaagttactcgcgaggcgagttgaggtagaataagaagtctataaatag 162  Q
    ||||||| |||||||||| ||  |||| ||| ||||||||||||||||||||||||  ||||||||||||||  | ||||| | |||| |||||||||||    
T  43687526 tgacgtggcacaaacccaatggggaagaaacttcaactcgccatggcgaatgaagtagctcgcgaggcgagtgaatgtagattcagaattctataaatag 43687427  T
Q  163 cc 164  Q
    ||    
T  43687426 cc 43687425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 31 - 164
Target Start/End: Complemental strand, 9870024 - 9869890
Alignment:
Q  31 aggcgagttacggcggctaa-actcctcagaggtgacgtgacacaaacccactgatgaagtaacctcaactcgccatggcgaatgaagttactcgcgagg 129  Q
    |||||||||| ||||| | | |||||| |||||| ||||| |||||| ||| || ||||| ||| |||||||||||||||||||||||   |||||||||    
T  9870024 aggcgagttagggcggtttagactccttagaggttacgtggcacaaaaccaatggtgaagaaacttcaactcgccatggcgaatgaaggagctcgcgagg 9869925  T
Q  130 cgagttgaggtagaataagaagtctataaatagcc 164  Q
    ||||| || | ||||  |||| | |||||||||||    
T  9869924 cgagtagatgcagaacgagaattttataaatagcc 9869890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 63 - 164
Target Start/End: Complemental strand, 45016688 - 45016587
Alignment:
Q  63 tgacgtgacacaaacccactgatgaagtaacctcaactcgccatggcgaatgaagttactcgcgaggcgagttgaggtagaataagaagtctataaatag 162  Q
    ||||||| |||||||||| ||  |||| ||| |||||||||||||||||||||||   ||||||||||||||  ||| ||| | |||| |||||||||||    
T  45016688 tgacgtggcacaaacccaatggggaagaaacttcaactcgccatggcgaatgaagcagctcgcgaggcgagtgaaggcagactcagaattctataaatag 45016589  T
Q  163 cc 164  Q
    ||    
T  45016588 cc 45016587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 63 - 163
Target Start/End: Complemental strand, 44242251 - 44242151
Alignment:
Q  63 tgacgtgacacaaacccactgatgaagtaacctcaactcgccatggcgaatgaagttactcgcgaggcgagttgaggtagaataagaagtctataaatag 162  Q
    ||||||| |||||||||| || ||||| ||| |||||||||||||||||||||||   |||||||||||||| || | | | | |||| |||||||||||    
T  44242251 tgacgtggcacaaacccaatggtgaaggaacttcaactcgccatggcgaatgaagaagctcgcgaggcgagtggatgcatatttagaattctataaatag 44242152  T
Q  163 c 163  Q
    |    
T  44242151 c 44242151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 28 - 137
Target Start/End: Complemental strand, 32798653 - 32798544
Alignment:
Q  28 gcgaggcgagttacggcggc-taaactcctcagaggtgacgtgacacaaacccactgatgaagtaacctcaactcgccatggcgaatgaagttactcgcg 126  Q
    ||||||||||||| |||||| ||||||||||| || ||||||| |||||||||| |  ||||| ||| || ||| ||||| ||||||||||   ||||||    
T  32798653 gcgaggcgagttagggcggcctaaactcctcacagatgacgtggcacaaacccaatcgtgaaggaacttc-acttgccatagcgaatgaaggagctcgcg 32798555  T
Q  127 aggcgagttga 137  Q
    |||||||||||    
T  32798554 aggcgagttga 32798544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 63 - 164
Target Start/End: Complemental strand, 6239551 - 6239450
Alignment:
Q  63 tgacgtgacacaaacccactgatgaagtaacctcaactcgccatggcgaatgaagttactcgcgaggcgagttgaggtagaataagaagtctataaatag 162  Q
    ||||||| |||||||||| ||  |||| ||| |||||||||| ||||||||||||   ||||||||||||||  ||| ||| | |||| |||||||||||    
T  6239551 tgacgtggcacaaacccaatggggaagaaacttcaactcgccttggcgaatgaagcagctcgcgaggcgagtgaaggcagactcagaattctataaatag 6239452  T
Q  163 cc 164  Q
    ||    
T  6239451 cc 6239450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 63 - 164
Target Start/End: Complemental strand, 42092803 - 42092702
Alignment:
Q  63 tgacgtgacacaaacccactgatgaagtaacctcaactcgccatggcgaatgaagttactcgcgaggcgagttgaggtagaataagaagtctataaatag 162  Q
    ||||||| |||||||||| ||  |||| ||| |||||||||||||||||||||||   ||||||||||||||  ||| ||| | |||| |||||||| ||    
T  42092803 tgacgtggcacaaacccaatggggaagaaacttcaactcgccatggcgaatgaagcagctcgcgaggcgagtgaaggcagactcagaattctataaagag 42092704  T
Q  163 cc 164  Q
    ||    
T  42092703 cc 42092702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 63 - 163
Target Start/End: Complemental strand, 35085896 - 35085796
Alignment:
Q  63 tgacgtgacacaaacccactgatgaagtaacctcaactcgccatggcgaatgaagttactcgcgaggcgagttgaggtagaataagaagtctataaatag 162  Q
    ||||||| ||||||| || || ||||| |||  ||||||||||||||||||||||   |||||||||||||| || | ||| | |||| |||||||||||    
T  35085896 tgacgtggcacaaactcaatggtgaaggaactccaactcgccatggcgaatgaaggagctcgcgaggcgagtggatgcagatttagaattctataaatag 35085797  T
Q  163 c 163  Q
    |    
T  35085796 c 35085796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 98 - 135
Target Start/End: Complemental strand, 45023491 - 45023454
Alignment:
Q  98 actcgccatggcgaatgaagttactcgcgaggcgagtt 135  Q
    ||||||||||||||||||  ||||||||||||||||||    
T  45023491 actcgccatggcgaatgattttactcgcgaggcgagtt 45023454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 81; Significance: 9e-38; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 81; E-Value: 9e-38
Query Start/End: Original strand, 28 - 179
Target Start/End: Original strand, 20650361 - 20650513
Alignment:
Q  28 gcgaggcgagttacggcggctaaa-ctcctcagaggtgacgtgacacaaacccactgatgaagtaacctcaactcgccatggcgaatgaagttactcgcg 126  Q
    ||||||||||||| |||||||||| |||||||||||||||||| ||||||||||||  |||||||||||||||||| |||||||||||||| ||||||||    
T  20650361 gcgaggcgagttagggcggctaaatctcctcagaggtgacgtgtcacaaacccactagtgaagtaacctcaactcggcatggcgaatgaagctactcgcg 20650460  T
Q  127 aggcgagttgaggtagaataagaagtctataaatagccacttgataatttcat 179  Q
    ||||||||||| | |||| || |  ||||||||   ||||||||| |||||||    
T  20650461 aggcgagttgatgcagaacaaaatttctataaaagcccacttgatcatttcat 20650513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 28 - 164
Target Start/End: Complemental strand, 43995994 - 43995857
Alignment:
Q  28 gcgaggcgagttacggcgg-ctaaactcctcagaggtgacgtgacacaaacccactgatgaagtaacctcaactcgccatggcgaatgaagttactcgcg 126  Q
    ||||||||||||| ||||| |||||||||||| |||||||||| | ||||||||||| |||||||||||||||||||||| |||| ||||||||||||||    
T  43995994 gcgaggcgagttagggcggtctaaactcctcaaaggtgacgtggctcaaacccactggtgaagtaacctcaactcgccattgcgagtgaagttactcgcg 43995895  T
Q  127 aggcgagttgaggtagaataagaagtctataaatagcc 164  Q
    ||||||||| | | |||| | |||  ||||||||||||    
T  43995894 aggcgagttaatgcagaacatgaatcctataaatagcc 43995857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 31 - 164
Target Start/End: Complemental strand, 47441753 - 47441619
Alignment:
Q  31 aggcgagttacggcggc-taaactcctcagaggtgacgtgacacaaacccactgatgaagtaacctcaactcgccatggcgaatgaagttactcgcgagg 129  Q
    |||||||||| |||| | |||| |||||| || ||||||| | |||||||| || |||||||||||||||||||||| ||||||||||||||||||||||    
T  47441753 aggcgagttagggcgacctaaattcctcaaagatgacgtggctcaaacccagtggtgaagtaacctcaactcgccattgcgaatgaagttactcgcgagg 47441654  T
Q  130 cgagttgaggtagaataagaagtctataaatagcc 164  Q
    |||||||| | |||| | ||| |||||||||||||    
T  47441653 cgagttgatgcagaacatgaattctataaatagcc 47441619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 30 - 164
Target Start/End: Complemental strand, 43932493 - 43932358
Alignment:
Q  30 gaggcgagttacggcggc-taaactcctcagaggtgacgtgacacaaacccactgatgaagtaacctcaactcgccatggcgaatgaagttactcgcgag 128  Q
    ||||||||||| |||||| ||||||||| |||||||||||| | |||||  | || ||||| ||| |||||||||||||||||||| |||||||||||||    
T  43932493 gaggcgagttagggcggcctaaactccttagaggtgacgtggctcaaacttaatggtgaagaaacatcaactcgccatggcgaatggagttactcgcgag 43932394  T
Q  129 gcgagttgaggtagaataagaagtctataaatagcc 164  Q
    ||||||||| | |||  ||||| |||||||||||||    
T  43932393 gcgagttgatgcagatcaagaattctataaatagcc 43932358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 27 - 135
Target Start/End: Complemental strand, 2786641 - 2786532
Alignment:
Q  27 tgcgaggcgagttacggcggctaaa-ctcctcagaggtgacgtgacacaaacccactgatgaagtaacctcaactcgccatggcgaatgaagttactcgc 125  Q
    |||||||||||||| |||||||||| ||||||| || ||||||| || |||||||||| ||||| ||| |||||||||||||||||||| | ||||| ||    
T  2786641 tgcgaggcgagttagggcggctaaaactcctcaaagctgacgtggcagaaacccactggtgaagaaacatcaactcgccatggcgaatgcatttacttgc 2786542  T
Q  126 gaggcgagtt 135  Q
    ||||||||||    
T  2786541 gaggcgagtt 2786532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 28 - 164
Target Start/End: Complemental strand, 25894157 - 25894021
Alignment:
Q  28 gcgaggcgagttacggcggctaaactcctcagaggtgacgtgacacaaacccactgatgaagtaacctcaactcgccatggcgaatgaagttactcgcga 127  Q
    ||||||||||||| ||||| | | |  |||| || ||||||| |||||||||| ||| |||| |||||||||||||||||||||||||||   |||||||    
T  25894157 gcgaggcgagttagggcggtttagcctctcacagctgacgtggcacaaacccaatgaagaaggaacctcaactcgccatggcgaatgaaggagctcgcga 25894058  T
Q  128 ggcgagttgaggtagaataagaagtctataaatagcc 164  Q
    ||||||| || | ||||| |||| |||||||||||||    
T  25894057 ggcgagtagatgcagaatcagaattctataaatagcc 25894021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 30 - 164
Target Start/End: Original strand, 10940607 - 10940742
Alignment:
Q  30 gaggcgagttacggcggc-taaactcctcagaggtgacgtgacacaaacccactgatgaagtaacctcaactcgccatggcgaatgaagttactcgcgag 128  Q
    ||||||||||| |||||| ||||||||||| ||| |||||| | |||||  | || ||||| ||| |||||||||||||||||||  |||||||||||||    
T  10940607 gaggcgagttagggcggcctaaactcctcaaaggcgacgtggctcaaacttaatggtgaagaaacatcaactcgccatggcgaatagagttactcgcgag 10940706  T
Q  129 gcgagttgaggtagaataagaagtctataaatagcc 164  Q
    ||||||||| | |||  ||||| |||||||||||||    
T  10940707 gcgagttgatgcagatcaagaattctataaatagcc 10940742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 28 - 164
Target Start/End: Complemental strand, 32747299 - 32747163
Alignment:
Q  28 gcgaggcgagttacggcggctaaactcctcagaggtgacgtgacacaaacccactgatgaagtaacctcaactcgccatggcgaatgaagttactcgcga 127  Q
    ||||||||||||| ||||| | | |  |||| || ||||||| |||||||||| ||  |||| |||||||||||||||||||||||||||   |||||||    
T  32747299 gcgaggcgagttagggcggtttagcctctcacagctgacgtggcacaaacccaatggcgaaggaacctcaactcgccatggcgaatgaaggagctcgcga 32747200  T
Q  128 ggcgagttgaggtagaataagaagtctataaatagcc 164  Q
    ||||||| || | ||||| |||| |||||||||||||    
T  32747199 ggcgagtagatgcagaatcagaattctataaatagcc 32747163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 54 - 164
Target Start/End: Complemental strand, 6037184 - 6037074
Alignment:
Q  54 cctcagaggtgacgtgacacaaacccactgatgaagtaacctcaactcgccatggcgaatgaagttactcgcgaggcgagttgaggtagaataagaagtc 153  Q
    ||||| || ||||||| |||||||||| ||  |||| ||||||||||||||||||||||||||    ||||||||||||||||| | ||| | |||| ||    
T  6037184 cctcacagctgacgtggcacaaacccaatggcgaaggaacctcaactcgccatggcgaatgaatgagctcgcgaggcgagttgatgcagagtcagaattc 6037085  T
Q  154 tataaatagcc 164  Q
    |||||||||||    
T  6037084 tataaatagcc 6037074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 28 - 164
Target Start/End: Complemental strand, 24180003 - 24179867
Alignment:
Q  28 gcgaggcgagttacggcggctaaactcctcagaggtgacgtgacacaaacccactgatgaagtaacctcaactcgccatggcgaatgaagttactcgcga 127  Q
    ||||||||||||| ||||| | | |  |||| || ||||||| |||||||||| ||  |||| ||||||||||||||||||||||||||    |||||||    
T  24180003 gcgaggcgagttagggcggtttagcctctcacagctgacgtggcacaaacccaatggcgaaggaacctcaactcgccatggcgaatgaatgagctcgcga 24179904  T
Q  128 ggcgagttgaggtagaataagaagtctataaatagcc 164  Q
    |||||||||| | ||| | |||| | |||||||||||    
T  24179903 ggcgagttgatgcagagtcagaattgtataaatagcc 24179867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 63 - 164
Target Start/End: Original strand, 27501282 - 27501383
Alignment:
Q  63 tgacgtgacacaaacccactgatgaagtaacctcaactcgccatggcgaatgaagttactcgcgaggcgagttgaggtagaataagaagtctataaatag 162  Q
    ||||||| |||||||||| ||  |||| ||| ||||||||||||||||||||| |   ||||||||||||||  ||| ||| | |||| |||||||||||    
T  27501282 tgacgtggcacaaacccaatggggaagaaacttcaactcgccatggcgaatgatgcagctcgcgaggcgagtgaaggcagactcagaattctataaatag 27501381  T
Q  163 cc 164  Q
    ||    
T  27501382 cc 27501383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 63 - 164
Target Start/End: Original strand, 9569848 - 9569949
Alignment:
Q  63 tgacgtgacacaaacccactgatgaagtaacctcaactcgccatggcgaatgaagttactcgcgaggcgagttgaggtagaataagaagtctataaatag 162  Q
    ||||||| |||||||||| ||  |||| ||| |||||||||||||||||| ||||   |||||||||||||||     ||||| |||| |||||||||||    
T  9569848 tgacgtggcacaaacccaatggggaagaaacttcaactcgccatggcgaaggaaggagctcgcgaggcgagttagtacagaatcagaattctataaatag 9569947  T
Q  163 cc 164  Q
    ||    
T  9569948 cc 9569949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 73 - 164
Target Start/End: Complemental strand, 23069374 - 23069283
Alignment:
Q  73 caaacccactgatgaagtaacctcaactcgccatggcgaatgaagttactcgcgaggcgagttgaggtagaataagaagtctataaatagcc 164  Q
    |||||||| ||  |||| ||| ||||||||||||||||||||||||  ||||| ||||||||  | | ||| | |||| |||||||||||||    
T  23069374 caaacccaatggggaagaaacttcaactcgccatggcgaatgaagtagctcgcaaggcgagtgaatgcagactcagaattctataaatagcc 23069283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 63 - 164
Target Start/End: Original strand, 4310795 - 4310895
Alignment:
Q  63 tgacgtgacacaaacccactgatgaagtaacctcaactcgccatggcgaatgaagttactcgcgaggcgagttgaggtagaataagaagtctataaatag 162  Q
    ||||||| |||||||||| ||  |||| ||| ||||||||||| ||||||||||||  |||| |||||||||  | | ||| | |||| |||||||||||    
T  4310795 tgacgtggcacaaacccaatggggaagaaacttcaactcgcca-ggcgaatgaagtagctcgtgaggcgagtgcatgcagactcagaattctataaatag 4310893  T
Q  163 cc 164  Q
    ||    
T  4310894 cc 4310895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 63 - 164
Target Start/End: Original strand, 9576350 - 9576451
Alignment:
Q  63 tgacgtgacacaaacccactgatgaagtaacctcaactcgccatggcgaatgaagttactcgcgaggcgagttgaggtagaataagaagtctataaatag 162  Q
    ||||||| |||||||||| ||  |||| ||| ||||||||||||||| || ||||   |||||||||||||||     ||||| |||| |||||||||||    
T  9576350 tgacgtggcacaaacccaatggggaagaaacttcaactcgccatggcaaaggaaggagctcgcgaggcgagttagtacagaatcagaattctataaatag 9576449  T
Q  163 cc 164  Q
    ||    
T  9576450 cc 9576451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 98 - 135
Target Start/End: Complemental strand, 32747325 - 32747288
Alignment:
Q  98 actcgccatggcgaatgaagttactcgcgaggcgagtt 135  Q
    |||| |||||||||||||| ||||||||||||||||||    
T  32747325 actctccatggcgaatgaatttactcgcgaggcgagtt 32747288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 74; Significance: 1e-33; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 28 - 179
Target Start/End: Original strand, 12505069 - 12505221
Alignment:
Q  28 gcgaggcgagttacggcggc-taaactcctcagaggtgacgtgacacaaacccactgatgaagtaacctcaactcgccatggcgaatgaagttactcgcg 126  Q
    ||||||||||||| |||||| ||||||||||| |||||| ||| | ||||||||||| ||||||||||||| |||||||| |||||||||||||||||||    
T  12505069 gcgaggcgagttagggcggcctaaactcctcaaaggtgatgtggctcaaacccactggtgaagtaacctca-ctcgccattgcgaatgaagttactcgcg 12505167  T
Q  127 aggcgagttgaggtagaataagaagtctataaatag-ccacttgataatttcat 179  Q
    ||||||||||| | | |||  ||| ||||||||||| ||||||||| |||||||    
T  12505168 aggcgagttgatgaataatgggaattctataaatagcccacttgatcatttcat 12505221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 28 - 161
Target Start/End: Complemental strand, 5877148 - 5877015
Alignment:
Q  28 gcgaggcgagttacggcggctaaactcctcagaggtgacgtgacacaaacccactgatgaagtaacctcaactcgccatggcgaatgaagttactcgcga 127  Q
    ||||||||||||| ||||| | ||||| ||| || |||| || |||||||||| || ||||| |||||||||||||||||||||||||||   |||||||    
T  5877148 gcgaggcgagttagggcggtttaactcttcacagatgacatggcacaaacccaatggtgaaggaacctcaactcgccatggcgaatgaaggagctcgcga 5877049  T
Q  128 ggcgagttgaggtagaataagaagtctataaata 161  Q
    |||||||||| | ||||| |||| ||||||||||    
T  5877048 ggcgagttgatgcagaatcagaattctataaata 5877015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 28 - 164
Target Start/End: Original strand, 29413959 - 29414095
Alignment:
Q  28 gcgaggcgagttacggcggctaaactcctcagaggtgacgtgacacaaacccactgatgaagtaacctcaactcgccatggcgaatgaagttactcgcga 127  Q
    ||||||||||| | ||||| | ||||| ||| || ||||||| |||||||||| || ||||| |||||||||||||||||||||||||||   |||||||    
T  29413959 gcgaggcgagtgagggcggtttaactcttcacagatgacgtggcacaaacccaatggtgaaggaacctcaactcgccatggcgaatgaaggagctcgcga 29414058  T
Q  128 ggcgagttgaggtagaataagaagtctataaatagcc 164  Q
    ||||||| || | ||||| |||| |||||||||||||    
T  29414059 ggcgagtggatgcagaatcagaattctataaatagcc 29414095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 31 - 137
Target Start/End: Complemental strand, 2823185 - 2823078
Alignment:
Q  31 aggcgagttacggcggctaaa-ctcctcagaggtgacgtgacacaaacccactgatgaagtaacctcaactcgccatggcgaatgaagttactcgcgagg 129  Q
    |||||||||| |||||||||| |||||||||||||||||| |||| | |||||| ||||| || ||||||||||||||||||||||||||| |||| ||     
T  2823185 aggcgagttagggcggctaaaactcctcagaggtgacgtgtcacagatccactggtgaagaaatctcaactcgccatggcgaatgaagttattcgcaaga 2823086  T
Q  130 cgagttga 137  Q
    ||||||||    
T  2823085 cgagttga 2823078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 28 - 163
Target Start/End: Complemental strand, 22360893 - 22360758
Alignment:
Q  28 gcgaggcgagttacggcggctaaactcctcagaggtgacgtgacacaaacccactgatgaagtaacctcaactcgccatggcgaatgaagttactcgcga 127  Q
    ||||||||||||| ||||| | ||||| ||| |  ||||||| |||||||||| || ||||| |||||||||||||||||||||||||||   |||||||    
T  22360893 gcgaggcgagttagggcggtttaactcttcacatatgacgtggcacaaacccaatggtgaaggaacctcaactcgccatggcgaatgaaggagctcgcga 22360794  T
Q  128 ggcgagttgaggtagaataagaagtctataaatagc 163  Q
    ||||||||||   ||||| |||| ||||||||||||    
T  22360793 ggcgagttgatacagaatcagaattctataaatagc 22360758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 28 - 164
Target Start/End: Complemental strand, 22314759 - 22314623
Alignment:
Q  28 gcgaggcgagttacggcggctaaactcctcagaggtgacgtgacacaaacccactgatgaagtaacctcaactcgccatggcgaatgaagttactcgcga 127  Q
    ||||||||||||| ||||| | ||||| ||| || |||| || |||||||||| || ||||| |||||||||||||||||||||||||||   |||||||    
T  22314759 gcgaggcgagttagggcggtttaactcttcacagatgacttggcacaaacccaatggtgaaggaacctcaactcgccatggcgaatgaaggagctcgcga 22314660  T
Q  128 ggcgagttgaggtagaataagaagtctataaatagcc 164  Q
    || |||||||   | ||| |||| |||||||||||||    
T  22314659 ggtgagttgatacaaaatcagaattctataaatagcc 22314623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 47 - 137
Target Start/End: Complemental strand, 2439697 - 2439607
Alignment:
Q  47 ctaaactcctcagaggtgacgtgacacaaacccactgatgaagtaacctcaactcgccatggcgaatgaagttactcgcgaggcgagttga 137  Q
    ||||||||||||||||||||||| | |||||  | || ||||| ||| ||||||| |||||||||||| ||||||||||||||||||||||    
T  2439697 ctaaactcctcagaggtgacgtggctcaaacttaatggtgaagaaacatcaactcaccatggcgaatggagttactcgcgaggcgagttga 2439607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 28 - 162
Target Start/End: Complemental strand, 42151749 - 42151615
Alignment:
Q  28 gcgaggcgagttacggcggctaaactcctcagaggtgacgtgacacaaacccactgatgaagtaacctcaactcgccatggcgaatgaagttactcgcga 127  Q
    ||||||||||| | ||||| | ||||| ||| || ||||||| |||||||||| || ||||| ||||||||||||||||||||| |||||   |||||||    
T  42151749 gcgaggcgagtgagggcggtttaactcttcacagatgacgtggcacaaacccaatggtgaaggaacctcaactcgccatggcgactgaaggagctcgcga 42151650  T
Q  128 ggcgagttgaggtagaataagaagtctataaatag 162  Q
    ||||||| ||   ||||| |||| |||||||||||    
T  42151649 ggcgagtggatacagaatcagaattctataaatag 42151615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 63 - 164
Target Start/End: Original strand, 34356580 - 34356681
Alignment:
Q  63 tgacgtgacacaaacccactgatgaagtaacctcaactcgccatggcgaatgaagttactcgcgaggcgagttgaggtagaataagaagtctataaatag 162  Q
    ||||||| |||||||||| ||  |||| ||| ||||||||||||||||||||||||  ||||||||||||||| ||| ||| | ||||  ||||||||||    
T  34356580 tgacgtggcacaaacccaatggggaagaaacttcaactcgccatggcgaatgaagtagctcgcgaggcgagttaaggcagactcagaatcctataaatag 34356679  T
Q  163 cc 164  Q
    ||    
T  34356680 cc 34356681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 28 - 164
Target Start/End: Original strand, 25893939 - 25894075
Alignment:
Q  28 gcgaggcgagttacggcggctaaactcctcagaggtgacgtgacacaaacccactgatgaagtaacctcaactcgccatggcgaatgaagttactcgcga 127  Q
    ||||||||||||| ||||| | | |  |||| || ||||||| |||||||||| ||  |||| ||||||||||||||||||||||||||    |||||||    
T  25893939 gcgaggcgagttagggcggtttagcctctcacagctgacgtggcacaaacccaatggcgaaggaacctcaactcgccatggcgaatgaatgagctcgcga 25894038  T
Q  128 ggcgagttgaggtagaataagaagtctataaatagcc 164  Q
    |||||||||| | ||| | |||| | |||||||||||    
T  25894039 ggcgagttgatgcagagtcagaattgtataaatagcc 25894075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 28 - 111
Target Start/End: Original strand, 30579510 - 30579594
Alignment:
Q  28 gcgaggcgagttacggcggctaaa-ctcctcagaggtgacgtgacacaaacccactgatgaagtaacctcaactcgccatggcga 111  Q
    ||||||||||||| |||||| ||| |||||||||| ||||||| || |||||||||| ||||| ||| |||||||||||||||||    
T  30579510 gcgaggcgagttaaggcggccaaaactcctcagagctgacgtggcagaaacccactggtgaagaaacatcaactcgccatggcga 30579594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 63 - 164
Target Start/End: Original strand, 34358371 - 34358472
Alignment:
Q  63 tgacgtgacacaaacccactgatgaagtaacctcaactcgccatggcgaatgaagttactcgcgaggcgagttgaggtagaataagaagtctataaatag 162  Q
    ||||||| |||||||||| ||  |||| ||| ||||||||||||||||||||||||  | ||||||||||||| ||| ||| | ||||  ||||||||||    
T  34358371 tgacgtggcacaaacccaatggggaagaaacttcaactcgccatggcgaatgaagtagcccgcgaggcgagttaaggcagactcagaatcctataaatag 34358470  T
Q  163 cc 164  Q
    ||    
T  34358471 cc 34358472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 63 - 164
Target Start/End: Original strand, 40957942 - 40958043
Alignment:
Q  63 tgacgtgacacaaacccactgatgaagtaacctcaactcgccatggcgaatgaagttactcgcgaggcgagttgaggtagaataagaagtctataaatag 162  Q
    ||||||| |||||||||| ||  |||| ||||||||||||||||||||||||||    ||||||||||||||||| | ||| | | || |||||||||||    
T  40957942 tgacgtggcacaaacccaatggcgaaggaacctcaactcgccatggcgaatgaatgagctcgcgaggcgagttgatgcagagtcaaaattctataaatag 40958041  T
Q  163 cc 164  Q
    ||    
T  40958042 cc 40958043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 63 - 164
Target Start/End: Complemental strand, 2958767 - 2958666
Alignment:
Q  63 tgacgtgacacaaacccactgatgaagtaacctcaactcgccatggcgaatgaagttactcgcgaggcgagttgaggtagaataagaagtctataaatag 162  Q
    ||||||| |||||||||| ||  |||| ||| |||||||||| ||||||||||||   ||||||||||||||  ||| ||| | |||| |||||||||||    
T  2958767 tgacgtggcacaaacccaatggggaagaaacttcaactcgccttggcgaatgaagcagctcgcgaggcgagtgaaggcagactcagaattctataaatag 2958668  T
Q  163 cc 164  Q
    ||    
T  2958667 cc 2958666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 63 - 164
Target Start/End: Complemental strand, 2967236 - 2967135
Alignment:
Q  63 tgacgtgacacaaacccactgatgaagtaacctcaactcgccatggcgaatgaagttactcgcgaggcgagttgaggtagaataagaagtctataaatag 162  Q
    ||||||| |||||||||| ||  |||| ||| |||||||||| ||||||||||||   ||||||||||||||  ||| ||| | |||| |||||||||||    
T  2967236 tgacgtggcacaaacccaatggggaagaaacttcaactcgccttggcgaatgaagcagctcgcgaggcgagtgaaggcagactcagaattctataaatag 2967137  T
Q  163 cc 164  Q
    ||    
T  2967136 cc 2967135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 63 - 164
Target Start/End: Complemental strand, 29974866 - 29974765
Alignment:
Q  63 tgacgtgacacaaacccactgatgaagtaacctcaactcgccatggcgaatgaagttactcgcgaggcgagttgaggtagaataagaagtctataaatag 162  Q
    ||||||| |||||||||| ||  |||| ||| |||||||||| ||||||||||||   ||||||||||||||  ||| ||| | |||| |||||||||||    
T  29974866 tgacgtggcacaaacccaatggggaagaaacttcaactcgccttggcgaatgaagcagctcgcgaggcgagtgaaggcagactcagaattctataaatag 29974767  T
Q  163 cc 164  Q
    ||    
T  29974766 cc 29974765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 63 - 164
Target Start/End: Complemental strand, 29981369 - 29981268
Alignment:
Q  63 tgacgtgacacaaacccactgatgaagtaacctcaactcgccatggcgaatgaagttactcgcgaggcgagttgaggtagaataagaagtctataaatag 162  Q
    ||||||| |||||||||| ||  |||| ||| |||||||||| ||||||||||||   ||||||||||||||  ||| ||| | |||| |||||||||||    
T  29981369 tgacgtggcacaaacccaatggggaagaaacttcaactcgccttggcgaatgaagcagctcgcgaggcgagtgaaggcagactcagaattctataaatag 29981270  T
Q  163 cc 164  Q
    ||    
T  29981269 cc 29981268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 63 - 164
Target Start/End: Original strand, 30021776 - 30021877
Alignment:
Q  63 tgacgtgacacaaacccactgatgaagtaacctcaactcgccatggcgaatgaagttactcgcgaggcgagttgaggtagaataagaagtctataaatag 162  Q
    ||||||| |||||||||| ||  |||| ||| |||||||||| ||||||||||||   ||||||||||||||  ||| ||| | |||| |||||||||||    
T  30021776 tgacgtggcacaaacccaatggggaagaaacttcaactcgccttggcgaatgaagcagctcgcgaggcgagtgaaggcagactcagaattctataaatag 30021875  T
Q  163 cc 164  Q
    ||    
T  30021876 cc 30021877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 63 - 134
Target Start/End: Complemental strand, 4974461 - 4974390
Alignment:
Q  63 tgacgtgacacaaacccactgatgaagtaacctcaactcgccatggcgaatgaagttactcgcgaggcgagt 134  Q
    ||||||| |||||||||| || | ||| ||| |||||| ||||||||||||||||   ||||||||||||||    
T  4974461 tgacgtggcacaaacccaatggtaaaggaacttcaacttgccatggcgaatgaaggagctcgcgaggcgagt 4974390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 66; Significance: 8e-29; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 28 - 164
Target Start/End: Original strand, 45067716 - 45067853
Alignment:
Q  28 gcgaggcgagttacggcggc-taaactcctcagaggtgacgtgacacaaacccactgatgaagtaacctcaactcgccatggcgaatgaagttactcgcg 126  Q
    ||||||||||||| |||||| |||||| ||||  ||||||||| | |||||  | || ||||| ||| |||||||||||||||||||| |||||||||||    
T  45067716 gcgaggcgagttagggcggcctaaacttctcaagggtgacgtggctcaaacttaatggtgaagaaacatcaactcgccatggcgaatggagttactcgcg 45067815  T
Q  127 aggcgagttgaggtagaataagaagtctataaatagcc 164  Q
    ||||||||||| ||||| |||||| |||||||||||||    
T  45067816 aggcgagttgatgtagattaagaattctataaatagcc 45067853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 27 - 137
Target Start/End: Complemental strand, 15013322 - 15013211
Alignment:
Q  27 tgcgaggcgagttacggcgg-ctaaactcctcagaggtgacgtgacacaaacccactgatgaagtaacctcaactcgccatggcgaatgaagttactcgc 125  Q
    |||||||||||||| ||||| ||| |||||||| || ||||||| ||||||||||||| ||||| ||  | |||||||||||||||||||||   |||||    
T  15013322 tgcgaggcgagttagggcggtctagactcctcacagatgacgtggcacaaacccactggtgaaggaatttaaactcgccatggcgaatgaaggagctcgc 15013223  T
Q  126 gaggcgagttga 137  Q
    ||||||||||||    
T  15013222 gaggcgagttga 15013211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 63 - 163
Target Start/End: Original strand, 11357499 - 11357599
Alignment:
Q  63 tgacgtgacacaaacccactgatgaagtaacctcaactcgccatggcgaatgaagttactcgcgaggcgagttgaggtagaataagaagtctataaatag 162  Q
    ||||||| |||||||||| ||  |||| ||||||||||||||||||||||||||||  ||||||||||||||  | | ||| | |||| |||||||||||    
T  11357499 tgacgtggcacaaacccaatggcgaaggaacctcaactcgccatggcgaatgaagtagctcgcgaggcgagtgaatgcagactcagaattctataaatag 11357598  T
Q  163 c 163  Q
    |    
T  11357599 c 11357599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 28 - 164
Target Start/End: Original strand, 36425021 - 36425157
Alignment:
Q  28 gcgaggcgagttacggcggctaaactcctcagaggtgacgtgacacaaacccactgatgaagtaacctcaactcgccatggcgaatgaagttactcgcga 127  Q
    ||||||||||||| ||||| | | |  |||| || ||||||| |||||||||| ||  |||| ||||||||||||||||||||||||||    |||||||    
T  36425021 gcgaggcgagttagggcggtttagcctctcacagctgacgtggcacaaacccaatggcgaaggaacctcaactcgccatggcgaatgaatgagctcgcga 36425120  T
Q  128 ggcgagttgaggtagaataagaagtctataaatagcc 164  Q
    |||||||||| | ||| | |||| | |||||||||||    
T  36425121 ggcgagttgatgcagagtcagaattgtataaatagcc 36425157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 63 - 164
Target Start/End: Complemental strand, 1239108 - 1239007
Alignment:
Q  63 tgacgtgacacaaacccactgatgaagtaacctcaactcgccatggcgaatgaagttactcgcgaggcgagttgaggtagaataagaagtctataaatag 162  Q
    ||||||| |||||||||| || ||||| ||| |||||||||||||||||||||||   |||||||||||||| ||   ||| | |||| |||||||||||    
T  1239108 tgacgtggcacaaacccaatggtgaaggaacttcaactcgccatggcgaatgaagaagctcgcgaggcgagtagacacagatttagaactctataaatag 1239009  T
Q  163 cc 164  Q
    ||    
T  1239008 cc 1239007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 63 - 164
Target Start/End: Original strand, 6463891 - 6463992
Alignment:
Q  63 tgacgtgacacaaacccactgatgaagtaacctcaactcgccatggcgaatgaagttactcgcgaggcgagttgaggtagaataagaagtctataaatag 162  Q
    ||||||| |||||||||| ||  |||| ||| |||||||||||||||||||||||   ||||||||||||||  ||| ||| | |||| |||||||||||    
T  6463891 tgacgtggcacaaacccaatggggaagaaacttcaactcgccatggcgaatgaagcagctcgcgaggcgagtgaaggcagactcagaattctataaatag 6463990  T
Q  163 cc 164  Q
    ||    
T  6463991 cc 6463992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 63 - 164
Target Start/End: Complemental strand, 7312254 - 7312153
Alignment:
Q  63 tgacgtgacacaaacccactgatgaagtaacctcaactcgccatggcgaatgaagttactcgcgaggcgagttgaggtagaataagaagtctataaatag 162  Q
    ||||||| |||||||||| ||  |||| ||| |||||||||||||||||||||||   ||||||||||||||  ||| ||| | |||| |||||||||||    
T  7312254 tgacgtggcacaaacccaatggggaagaaacttcaactcgccatggcgaatgaagcagctcgcgaggcgagtgaaggcagactcagaattctataaatag 7312155  T
Q  163 cc 164  Q
    ||    
T  7312154 cc 7312153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 63 - 164
Target Start/End: Original strand, 36004799 - 36004900
Alignment:
Q  63 tgacgtgacacaaacccactgatgaagtaacctcaactcgccatggcgaatgaagttactcgcgaggcgagttgaggtagaataagaagtctataaatag 162  Q
    ||||||| |||||||||| ||  |||| ||| |||||||||||||||||||||||   ||||||||||||||  ||| ||| | |||| |||||||||||    
T  36004799 tgacgtggcacaaacccaatggggaagaaacttcaactcgccatggcgaatgaagcagctcgcgaggcgagtgaaggcagactcagaattctataaatag 36004898  T
Q  163 cc 164  Q
    ||    
T  36004899 cc 36004900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 63 - 164
Target Start/End: Complemental strand, 36076872 - 36076771
Alignment:
Q  63 tgacgtgacacaaacccactgatgaagtaacctcaactcgccatggcgaatgaagttactcgcgaggcgagttgaggtagaataagaagtctataaatag 162  Q
    ||||||| |||||||||| ||| |||| ||| |||||||||||||| ||||||||   ||||||||||||||  ||| ||| | |||| |||||||||||    
T  36076872 tgacgtggcacaaacccaatgaggaagaaacttcaactcgccatggtgaatgaagcagctcgcgaggcgagtgaaggcagactcagaattctataaatag 36076773  T
Q  163 cc 164  Q
    ||    
T  36076772 cc 36076771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 63 - 134
Target Start/End: Original strand, 16709997 - 16710068
Alignment:
Q  63 tgacgtgacacaaacccactgatgaagtaacctcaactcgccatggcgaatgaagttactcgcgaggcgagt 134  Q
    ||||||| |||||||||| ||  |||| ||| ||||||||||||||||||||||||  ||||||||||||||    
T  16709997 tgacgtggcacaaacccaatggggaagaaacttcaactcgccatggcgaatgaagtagctcgcgaggcgagt 16710068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 63 - 164
Target Start/End: Original strand, 8012635 - 8012736
Alignment:
Q  63 tgacgtgacacaaacccactgatgaagtaacctcaactcgccatggcgaatgaagttactcgcgaggcgagttgaggtagaataagaagtctataaatag 162  Q
    ||||||| |||||||||| ||  |||| ||| ||||||||||||||| |||||||   ||||||||||||||  ||| ||| | |||| |||||||||||    
T  8012635 tgacgtggcacaaacccaatggggaagaaacttcaactcgccatggcaaatgaagcagctcgcgaggcgagtgaaggcagactcagaattctataaatag 8012734  T
Q  163 cc 164  Q
    ||    
T  8012735 cc 8012736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 63 - 164
Target Start/End: Original strand, 36021063 - 36021164
Alignment:
Q  63 tgacgtgacacaaacccactgatgaagtaacctcaactcgccatggcgaatgaagttactcgcgaggcgagttgaggtagaataagaagtctataaatag 162  Q
    ||||||| |||||||||| ||  |||| ||||||||||||||||||| ||||||    ||||||||||||||||| | ||| | |||| | |||||||||    
T  36021063 tgacgtggcacaaacccaatggcgaaggaacctcaactcgccatggcaaatgaatgagctcgcgaggcgagttgatgcagagtcagaattgtataaatag 36021162  T
Q  163 cc 164  Q
    ||    
T  36021163 cc 36021164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 63 - 134
Target Start/End: Complemental strand, 12769793 - 12769722
Alignment:
Q  63 tgacgtgacacaaacccactgatgaagtaacctcaactcgccatggcgaatgaagttactcgcgaggcgagt 134  Q
    ||||||| |||||||||| || ||||| ||| |||||||||||||||||||||||   ||||||||| ||||    
T  12769793 tgacgtggcacaaacccaatggtgaaggaacttcaactcgccatggcgaatgaaggagctcgcgaggtgagt 12769722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 27 - 84
Target Start/End: Complemental strand, 15013486 - 15013428
Alignment:
Q  27 tgcgaggcgagttacggcgg-ctaaactcctcagaggtgacgtgacacaaacccactga 84  Q
    |||||||||||||| ||||| ||| |||||||| || ||||||| ||||||||||||||    
T  15013486 tgcgaggcgagttagggcggtctagactcctcacagatgacgtggcacaaacccactga 15013428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 65; Significance: 3e-28; HSPs: 27)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 28 - 164
Target Start/End: Complemental strand, 15950078 - 15949942
Alignment:
Q  28 gcgaggcgagttacggcggctaaactcctcagaggtgacgtgacacaaacccactgatgaagtaacctcaactcgccatggcgaatgaagttactcgcga 127  Q
    ||||||||||||| ||||| | ||||| ||| || ||| ||| |||||||||| || ||||| |||||||||||||||||||||||||||   |||||||    
T  15950078 gcgaggcgagttagggcggtttaactcttcatagatgatgtggcacaaacccaatggtgaaggaacctcaactcgccatggcgaatgaaggagctcgcga 15949979  T
Q  128 ggcgagttgaggtagaataagaagtctataaatagcc 164  Q
    |||||||||| ||||| | |||| |||||||||||||    
T  15949978 ggcgagttgatgtagagtcagaattctataaatagcc 15949942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 27 - 164
Target Start/End: Complemental strand, 19090726 - 19090589
Alignment:
Q  27 tgcgaggcgagttacggcggctaaactcctcagaggtgacgtgacacaaacccactgatgaagtaacctcaactcgccatggcgaatgaagttactcgcg 126  Q
    |||||||||||||| ||| |   ||||| ||| || ||||||| |||||||||| || ||||| |||||||||||||||||||||||||||   ||||||    
T  19090726 tgcgaggcgagttagggcagtctaactcttcacagatgacgtggcacaaacccaatggtgaaggaacctcaactcgccatggcgaatgaaggagctcgcg 19090627  T
Q  127 aggcgagttgaggtagaataagaagtctataaatagcc 164  Q
    ||||||||| | | ||||| |||| |||||||||||||    
T  19090626 aggcgagttcatgcagaatcagaattctataaatagcc 19090589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 28 - 164
Target Start/End: Complemental strand, 15915557 - 15915421
Alignment:
Q  28 gcgaggcgagttacggcggctaaactcctcagaggtgacgtgacacaaacccactgatgaagtaacctcaactcgccatggcgaatgaagttactcgcga 127  Q
    ||||||||||||| ||||| | ||||| ||| || |||| || |||||||||| || ||||| |||||||||||||||||||||||||||   || ||||    
T  15915557 gcgaggcgagttagggcggtttaactcttcacagatgacatggcacaaacccaatggtgaaggaacctcaactcgccatggcgaatgaaggagcttgcga 15915458  T
Q  128 ggcgagttgaggtagaataagaagtctataaatagcc 164  Q
    |||||||||| | ||| | |||| |||||||||||||    
T  15915457 ggcgagttgatgcagagtcagaattctataaatagcc 15915421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 28 - 161
Target Start/End: Complemental strand, 26602916 - 26602783
Alignment:
Q  28 gcgaggcgagttacggcggctaaactcctcagaggtgacgtgacacaaacccactgatgaagtaacctcaactcgccatggcgaatgaagttactcgcga 127  Q
    |||||| |||||| ||||| | ||||| ||| || ||||||| |||||||||| || ||||| ||||||||||| ||||||||||| |||   |||||||    
T  26602916 gcgaggggagttagggcggtttaactcttcacagatgacgtggcacaaacccaatggtgaaggaacctcaactcaccatggcgaattaaggagctcgcga 26602817  T
Q  128 ggcgagttgaggtagaataagaagtctataaata 161  Q
    |||||||||| | ||||| |||| ||||||||||    
T  26602816 ggcgagttgatgcagaatcagaattctataaata 26602783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 29 - 164
Target Start/End: Original strand, 9642208 - 9642343
Alignment:
Q  29 cgaggcgagttacggcggctaaactcctcagaggtgacgtgacacaaacccactgatgaagtaacctcaactcgccatggcgaatgaagttactcgcgag 128  Q
    |||||||||||| ||||| | | |  |||| || ||||||| |||||||||| ||  |||| |||||||||||||| ||||||||||||   ||||||||    
T  9642208 cgaggcgagttagggcggtttagcctctcacagctgacgtggcacaaacccaatggcgaaggaacctcaactcgccctggcgaatgaaggagctcgcgag 9642307  T
Q  129 gcgagttgaggtagaataagaagtctataaatagcc 164  Q
    |||||| || | ||||| |||| |||||||||||||    
T  9642308 gcgagtagatgcagaatcagaattctataaatagcc 9642343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 63 - 164
Target Start/End: Original strand, 3923422 - 3923523
Alignment:
Q  63 tgacgtgacacaaacccactgatgaagtaacctcaactcgccatggcgaatgaagttactcgcgaggcgagttgaggtagaataagaagtctataaatag 162  Q
    ||||||| |||||||||| ||  |||| ||||| |||||||||||||||||||||   |||||||||||||| || | ||||| |||| |||||||||||    
T  3923422 tgacgtggcacaaacccaatggcgaaggaaccttaactcgccatggcgaatgaaggagctcgcgaggcgagtagatgcagaatcagaattctataaatag 3923521  T
Q  163 cc 164  Q
    ||    
T  3923522 cc 3923523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 63 - 164
Target Start/End: Complemental strand, 21643413 - 21643312
Alignment:
Q  63 tgacgtgacacaaacccactgatgaagtaacctcaactcgccatggcgaatgaagttactcgcgaggcgagttgaggtagaataagaagtctataaatag 162  Q
    ||||||| |||||||||| ||  |||| ||||||||||||||||||||||||||    ||||||||||||||||| | ||| | |||| |||||||||||    
T  21643413 tgacgtggcacaaacccaatggcgaaggaacctcaactcgccatggcgaatgaatgagctcgcgaggcgagttgatgcagagtcagaattctataaatag 21643314  T
Q  163 cc 164  Q
    ||    
T  21643313 cc 21643312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 28 - 164
Target Start/End: Complemental strand, 14288650 - 14288514
Alignment:
Q  28 gcgaggcgagttacggcggctaaactcctcagaggtgacgtgacacaaacccactgatgaagtaacctcaactcgccatggcgaatgaagttactcgcga 127  Q
    ||||||||||||| ||||| | | |  |||| || ||||||| |||||||||| ||  |||| ||||||||||||||||||||||||||    |||||||    
T  14288650 gcgaggcgagttagggcggtttagcctctcacagctgacgtggcacaaacccaatggcgaaggaacctcaactcgccatggcgaatgaatgagctcgcga 14288551  T
Q  128 ggcgagttgaggtagaataagaagtctataaatagcc 164  Q
    |||||||||| | ||| | |||| | |||||||||||    
T  14288550 ggcgagttgatgcagagtcagaattgtataaatagcc 14288514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 28 - 164
Target Start/End: Complemental strand, 14299835 - 14299699
Alignment:
Q  28 gcgaggcgagttacggcggctaaactcctcagaggtgacgtgacacaaacccactgatgaagtaacctcaactcgccatggcgaatgaagttactcgcga 127  Q
    ||||||||||||| ||||| | | |  |||| || ||||||| |||||||||| ||  |||| ||||||||||||||||||||||||||    |||||||    
T  14299835 gcgaggcgagttagggcggtttagcctctcacagctgacgtggcacaaacccaatggcgaaggaacctcaactcgccatggcgaatgaatgagctcgcga 14299736  T
Q  128 ggcgagttgaggtagaataagaagtctataaatagcc 164  Q
    |||||||||| | ||| | |||| | |||||||||||    
T  14299735 ggcgagttgatgcagagtcagaattgtataaatagcc 14299699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 28 - 133
Target Start/End: Original strand, 33849931 - 33850037
Alignment:
Q  28 gcgaggcgagttacggcggc-taaactcctcagaggtgacgtgacacaaacccactgatgaagtaacctcaactcgccatggcgaatgaagttactcgcg 126  Q
    ||||||||||||| |||||| || |||||||| |  ||||||| ||||||||||||| ||||| ||| | |||||||||||| ||||||||   ||||||    
T  33849931 gcgaggcgagttagggcggcctagactcctcacaaatgacgtggcacaaacccactggtgaaggaacttaaactcgccatggagaatgaaggagctcgcg 33850030  T
Q  127 aggcgag 133  Q
    |||||||    
T  33850031 aggcgag 33850037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 63 - 164
Target Start/End: Complemental strand, 1379854 - 1379753
Alignment:
Q  63 tgacgtgacacaaacccactgatgaagtaacctcaactcgccatggcgaatgaagttactcgcgaggcgagttgaggtagaataagaagtctataaatag 162  Q
    ||||||| |||||||||| ||  |||| ||| |||||||||||||||||||||||   ||||||||||||||  ||| ||| | |||| |||||||||||    
T  1379854 tgacgtggcacaaacccaatggggaagaaacttcaactcgccatggcgaatgaagcagctcgcgaggcgagtgaaggcagactcagaattctataaatag 1379755  T
Q  163 cc 164  Q
    ||    
T  1379754 cc 1379753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 63 - 164
Target Start/End: Complemental strand, 2447555 - 2447454
Alignment:
Q  63 tgacgtgacacaaacccactgatgaagtaacctcaactcgccatggcgaatgaagttactcgcgaggcgagttgaggtagaataagaagtctataaatag 162  Q
    ||||||| |||||||||| ||  |||| ||| |||||||||||||||||||||||   ||||||||||||||  ||| ||| | |||| |||||||||||    
T  2447555 tgacgtggcacaaacccaatggggaagaaacttcaactcgccatggcgaatgaagcagctcgcgaggcgagtgaaggcagactcagaattctataaatag 2447456  T
Q  163 cc 164  Q
    ||    
T  2447455 cc 2447454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 63 - 164
Target Start/End: Original strand, 5049227 - 5049328
Alignment:
Q  63 tgacgtgacacaaacccactgatgaagtaacctcaactcgccatggcgaatgaagttactcgcgaggcgagttgaggtagaataagaagtctataaatag 162  Q
    ||||||| |||||||||| ||  |||| ||| |||||||||||||||||||||||   ||||||||||||||  ||| ||| | |||| |||||||||||    
T  5049227 tgacgtggcacaaacccaatggggaagaaacttcaactcgccatggcgaatgaagcagctcgcgaggcgagtgaaggcagactcagaattctataaatag 5049326  T
Q  163 cc 164  Q
    ||    
T  5049327 cc 5049328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 63 - 164
Target Start/End: Original strand, 6020179 - 6020280
Alignment:
Q  63 tgacgtgacacaaacccactgatgaagtaacctcaactcgccatggcgaatgaagttactcgcgaggcgagttgaggtagaataagaagtctataaatag 162  Q
    ||||||| |||||||||| ||  |||| ||||||||||||||||||||||||||    ||||||||||||||||| | ||| | |||| | |||||||||    
T  6020179 tgacgtggcacaaacccaatggcgaaggaacctcaactcgccatggcgaatgaatgagctcgcgaggcgagttgatgcagagtcagaattgtataaatag 6020278  T
Q  163 cc 164  Q
    ||    
T  6020279 cc 6020280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 63 - 164
Target Start/End: Complemental strand, 6796345 - 6796244
Alignment:
Q  63 tgacgtgacacaaacccactgatgaagtaacctcaactcgccatggcgaatgaagttactcgcgaggcgagttgaggtagaataagaagtctataaatag 162  Q
    ||||||| |||||||||| ||  |||| ||| |||||||||||||||||||||||   ||||||||||||||  ||| ||| | |||| |||||||||||    
T  6796345 tgacgtggcacaaacccaatggggaagaaacttcaactcgccatggcgaatgaagcagctcgcgaggcgagtgaaggcagactcagaattctataaatag 6796246  T
Q  163 cc 164  Q
    ||    
T  6796245 cc 6796244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 63 - 164
Target Start/End: Original strand, 8184718 - 8184819
Alignment:
Q  63 tgacgtgacacaaacccactgatgaagtaacctcaactcgccatggcgaatgaagttactcgcgaggcgagttgaggtagaataagaagtctataaatag 162  Q
    ||||||| |||||||||| ||  |||| ||||||||||||||||||||||||||    ||||||||||||||||| | ||| | |||| | |||||||||    
T  8184718 tgacgtggcacaaacccaatggcgaaggaacctcaactcgccatggcgaatgaatgagctcgcgaggcgagttgatgcagagtcagaattgtataaatag 8184817  T
Q  163 cc 164  Q
    ||    
T  8184818 cc 8184819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 63 - 164
Target Start/End: Original strand, 8192278 - 8192379
Alignment:
Q  63 tgacgtgacacaaacccactgatgaagtaacctcaactcgccatggcgaatgaagttactcgcgaggcgagttgaggtagaataagaagtctataaatag 162  Q
    ||||||| |||||||||| ||  |||| ||||||||||||||||||||||||||    ||||||||||||||||| | ||| | |||| | |||||||||    
T  8192278 tgacgtggcacaaacccaatggcgaaggaacctcaactcgccatggcgaatgaatgagctcgcgaggcgagttgatgcagagtcagaattgtataaatag 8192377  T
Q  163 cc 164  Q
    ||    
T  8192378 cc 8192379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 63 - 164
Target Start/End: Complemental strand, 23613283 - 23613182
Alignment:
Q  63 tgacgtgacacaaacccactgatgaagtaacctcaactcgccatggcgaatgaagttactcgcgaggcgagttgaggtagaataagaagtctataaatag 162  Q
    ||||||| |||||||||| ||  |||| ||||||||||||||||||||||||||    ||||||||||||||||| | ||| |  ||| |||||||||||    
T  23613283 tgacgtggcacaaacccaatggcgaaggaacctcaactcgccatggcgaatgaatgagctcgcgaggcgagttgatgcagagtcggaattctataaatag 23613184  T
Q  163 cc 164  Q
    ||    
T  23613183 cc 23613182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 63 - 164
Target Start/End: Complemental strand, 36876450 - 36876349
Alignment:
Q  63 tgacgtgacacaaacccactgatgaagtaacctcaactcgccatggcgaatgaagttactcgcgaggcgagttgaggtagaataagaagtctataaatag 162  Q
    ||||||| |||||||||| ||  |||| ||||||||||||||||||||||||||    ||||||||||||||||| | ||| | |||| | |||||||||    
T  36876450 tgacgtggcacaaacccaatggcgaaggaacctcaactcgccatggcgaatgaatgagctcgcgaggcgagttgatgcagagtcagaattgtataaatag 36876351  T
Q  163 cc 164  Q
    ||    
T  36876350 cc 36876349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 63 - 164
Target Start/End: Original strand, 48346409 - 48346510
Alignment:
Q  63 tgacgtgacacaaacccactgatgaagtaacctcaactcgccatggcgaatgaagttactcgcgaggcgagttgaggtagaataagaagtctataaatag 162  Q
    ||||||| |||||||||| ||  |||| ||| |||||||||||||||||||||||   ||||||||||||||  ||| ||| | |||| |||||||||||    
T  48346409 tgacgtggcacaaacccaatggggaagaaacttcaactcgccatggcgaatgaagcagctcgcgaggcgagtgaaggcagactcagaattctataaatag 48346508  T
Q  163 cc 164  Q
    ||    
T  48346509 cc 48346510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 63 - 164
Target Start/End: Original strand, 48352793 - 48352894
Alignment:
Q  63 tgacgtgacacaaacccactgatgaagtaacctcaactcgccatggcgaatgaagttactcgcgaggcgagttgaggtagaataagaagtctataaatag 162  Q
    ||||||| |||||||||| ||  |||| ||| |||||||||||||||||||||||   ||||||||||||||  ||| ||| | |||| |||||||||||    
T  48352793 tgacgtggcacaaacccaatggggaagaaacttcaactcgccatggcgaatgaagcagctcgcgaggcgagtgaaggcagactcagaattctataaatag 48352892  T
Q  163 cc 164  Q
    ||    
T  48352893 cc 48352894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 63 - 164
Target Start/End: Original strand, 8141775 - 8141876
Alignment:
Q  63 tgacgtgacacaaacccactgatgaagtaacctcaactcgccatggcgaatgaagttactcgcgaggcgagttgaggtagaataagaagtctataaatag 162  Q
    ||||||| |||||||||| ||  |||| ||| ||||||||||||||||| |||||   ||||||||||||||  ||| ||| | |||| |||||||||||    
T  8141775 tgacgtggcacaaacccaatggggaagaaacttcaactcgccatggcgattgaagcagctcgcgaggcgagtgaaggcagactcagaattctataaatag 8141874  T
Q  163 cc 164  Q
    ||    
T  8141875 cc 8141876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 28 - 163
Target Start/End: Original strand, 22853507 - 22853642
Alignment:
Q  28 gcgaggcgagttacggcggctaaa-ctcctcagaggtgacgtgacacaaacccactgatgaagtaacctcaactcgccatggcgaatgaagttactcgcg 126  Q
    ||||||||||||| ||||||| |  || |||| || ||||||| |||||||||| || ||||| ||| ||| |||||| ||||||||||||   ||||||    
T  22853507 gcgaggcgagttagggcggcttaggcttctcacagctgacgtggcacaaacccaatggtgaaggaacttca-ctcgccctggcgaatgaaggagctcgcg 22853605  T
Q  127 aggcgagttgaggtagaataagaagtctataaatagc 163  Q
    ||||||||||| | ||||| | || | ||||||||||    
T  22853606 aggcgagttgatgcagaattaaaattttataaatagc 22853642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 72 - 162
Target Start/End: Original strand, 1947980 - 1948070
Alignment:
Q  72 acaaacccactgatgaagtaacctcaactcgccatggcgaatgaagttactcgcgaggcgagttgaggtagaataagaagtctataaatag 162  Q
    ||||||||| || ||||| |||||||||||||||||||||||||||   ||| ||||| ||||| | | ||||| ||||  ||||||||||    
T  1947980 acaaacccaatggtgaaggaacctcaactcgccatggcgaatgaaggagctcacgaggtgagttcatgcagaatcagaatactataaatag 1948070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 28 - 163
Target Start/End: Complemental strand, 39433828 - 39433693
Alignment:
Q  28 gcgaggcgagttacggcggctaaa-ctcctcagaggtgacgtgacacaaacccactgatgaagtaacctcaactcgccatggcgaatgaagttactcgcg 126  Q
    ||||||||||||| ||||||| |  || |||| || ||||||| |||||||| | || ||||| ||| | | |||||| ||||||||||||   ||||||    
T  39433828 gcgaggcgagttagggcggcttaggcttctcacagctgacgtggcacaaacctaatggtgaaggaacttta-ctcgccttggcgaatgaaggagctcgcg 39433730  T
Q  127 aggcgagttgaggtagaataagaagtctataaatagc 163  Q
    |||||||||||   ||||| ||||||||||| |||||    
T  39433729 aggcgagttgatacagaattagaagtctatatatagc 39433693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 28 - 137
Target Start/End: Complemental strand, 37026647 - 37026538
Alignment:
Q  28 gcgaggcgagttacggcggctaaa-ctcctcagaggtgacgtgacacaaacccactgatgaagtaacctcaactcgccatggcgaatgaagttactcgcg 126  Q
    ||||||||||||| ||||||| |  || |||| || ||||||| |||||||||| || ||||| |||  || |||||| ||||||||||||   ||||||    
T  37026647 gcgaggcgagttagggcggcttaggcttctcacagctgacgtggcacaaacccaatggtgaaggaactgca-ctcgccctggcgaatgaaggagctcgcg 37026549  T
Q  127 aggcgagttga 137  Q
    |||||||||||    
T  37026548 aggcgagttga 37026538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 116 - 164
Target Start/End: Complemental strand, 45434418 - 45434370
Alignment:
Q  116 agttactcgcgaggcgagttgaggtagaataagaagtctataaatagcc 164  Q
    |||||||||||||||||||| | | ||| |||||| |||||||||||||    
T  45434418 agttactcgcgaggcgagtttatgcagattaagaattctataaatagcc 45434370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 58; Significance: 5e-24; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 27 - 164
Target Start/End: Original strand, 16816627 - 16816764
Alignment:
Q  27 tgcgaggcgagttacggcggctaaactcctcagaggtgacgtgacacaaacccactgatgaagtaacctcaactcgccatggcgaatgaagttactcgcg 126  Q
    |||||||||||||| |||||   ||||| ||| || ||||||| |||||||||| || ||||| |||||||||||||||||||||||||||   ||| ||    
T  16816627 tgcgaggcgagttagggcggtctaactcttcacagatgacgtggcacaaacccaatggtgaaggaacctcaactcgccatggcgaatgaaggagctcacg 16816726  T
Q  127 aggcgagttgaggtagaataagaagtctataaatagcc 164  Q
    ||||||||| | | ||||| |||| |||||||||||||    
T  16816727 aggcgagttcatgcagaatcagaattctataaatagcc 16816764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 27 - 164
Target Start/End: Original strand, 16855784 - 16855921
Alignment:
Q  27 tgcgaggcgagttacggcggctaaactcctcagaggtgacgtgacacaaacccactgatgaagtaacctcaactcgccatggcgaatgaagttactcgcg 126  Q
    |||||||||||||| |||||   ||||| ||| || ||||||| |||||||||| || ||||| |||||||||||||||||||||||||||   ||| ||    
T  16855784 tgcgaggcgagttagggcggtctaactcttcacagatgacgtggcacaaacccaatggtgaaggaacctcaactcgccatggcgaatgaaggagctcacg 16855883  T
Q  127 aggcgagttgaggtagaataagaagtctataaatagcc 164  Q
    ||||||||| | | ||||| |||| |||||||||||||    
T  16855884 aggcgagttcatgcagaatcagaattctataaatagcc 16855921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 28 - 164
Target Start/End: Original strand, 21341230 - 21341367
Alignment:
Q  28 gcgaggcgagttacggcggctaa-actcctcagaggtgacgtgacacaaacccactgatgaagtaacctcaactcgccatggcgaatgaagttactcgcg 126  Q
    ||||||||||||| |||| || | |||||||| || ||||||| |||||| ||| || ||||| |||||||||||||||||||||||||||   ||||||    
T  21341230 gcgaggcgagttagggcgacttagactcctcacagctgacgtggcacaaaaccaatggtgaaggaacctcaactcgccatggcgaatgaagaagctcgcg 21341329  T
Q  127 aggcgagttgaggtagaataagaagtctataaatagcc 164  Q
    |||||| |||| | ||||| |||| |||||||||||||    
T  21341330 aggcgaattgatgcagaatcagaattctataaatagcc 21341367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 28 - 127
Target Start/End: Original strand, 11909269 - 11909369
Alignment:
Q  28 gcgaggcgagttacggcggctaaa-ctcctcagaggtgacgtgacacaaacccactgatgaagtaacctcaactcgccatggcgaatgaagttactcgcg 126  Q
    ||||||||||||| |||||||||| |||||||||| ||||||| || ||||||||||||||||||||  |||||| |||||||||||| | |||||||||    
T  11909269 gcgaggcgagttagggcggctaaaactcctcagagctgacgtggcagaaacccactgatgaagtaacagcaactcaccatggcgaatgcatttactcgcg 11909368  T
Q  127 a 127  Q
    |    
T  11909369 a 11909369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 28 - 137
Target Start/End: Original strand, 21067218 - 21067328
Alignment:
Q  28 gcgaggcgagttacggcgg-ctaaactcctcagaggtgacgtgacacaaacccactgatgaagtaacctcaactcgccatggcgaatgaagttactcgcg 126  Q
    ||||||||||||| ||||| |||||||| ||| || ||||||| |||||||||| || ||||| |||| ||||||||||||||||||||||   ||||||    
T  21067218 gcgaggcgagttatggcggtctaaactcttcacagctgacgtggcacaaacccaatggtgaaggaaccgcaactcgccatggcgaatgaaggagctcgcg 21067317  T
Q  127 aggcgagttga 137  Q
    |||||||||||    
T  21067318 aggcgagttga 21067328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 28 - 164
Target Start/End: Original strand, 2020738 - 2020874
Alignment:
Q  28 gcgaggcgagttacggcggctaaactcctcagaggtgacgtgacacaaacccactgatgaagtaacctcaactcgccatggcgaatgaagttactcgcga 127  Q
    ||||||||||||| ||||| | ||||| ||| || ||||||| |||||||||| || ||||| ||||||||||||||||| ||||||||    |||||||    
T  2020738 gcgaggcgagttagggcggtttaactcttcacagatgacgtggcacaaacccaatggtgaaggaacctcaactcgccatgacgaatgaaagagctcgcga 2020837  T
Q  128 ggcgagttgaggtagaataagaagtctataaatagcc 164  Q
    ||| |||| | | ||||| |||| |||||||||||||    
T  2020838 ggcaagttaatgcagaatcagaattctataaatagcc 2020874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 28 - 164
Target Start/End: Complemental strand, 15853480 - 15853344
Alignment:
Q  28 gcgaggcgagttacggcggctaaactcctcagaggtgacgtgacacaaacccactgatgaagtaacctcaactcgccatggcgaatgaagttactcgcga 127  Q
    ||||||||||||| ||||| | | |  |||| || ||||||| |||||||||| ||  |||| |||||||||||||| ||||||||||||   |||||||    
T  15853480 gcgaggcgagttagggcggtttagcctctcacagctgacgtggcacaaacccaatggcgaaggaacctcaactcgccctggcgaatgaaggagctcgcga 15853381  T
Q  128 ggcgagttgaggtagaataagaagtctataaatagcc 164  Q
    ||||||| || | ||||| |||| |||||||||||||    
T  15853380 ggcgagtagatgcagaatcagaattctataaatagcc 15853344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 28 - 164
Target Start/End: Original strand, 36781474 - 36781610
Alignment:
Q  28 gcgaggcgagttacggcggctaaactcctcagaggtgacgtgacacaaacccactgatgaagtaacctcaactcgccatggcgaatgaagttactcgcga 127  Q
    ||||||||||||| ||||| | | |  |||| || ||||||| |||||||||| ||  |||| |||||||||||||| ||||||||||||   |||||||    
T  36781474 gcgaggcgagttagggcggtttaccctctcacagctgacgtggcacaaacccaatggcgaaggaacctcaactcgccctggcgaatgaaggagctcgcga 36781573  T
Q  128 ggcgagttgaggtagaataagaagtctataaatagcc 164  Q
    ||||||| || | ||||| |||| |||||||||||||    
T  36781574 ggcgagtagatgcagaatcagaattctataaatagcc 36781610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 28 - 164
Target Start/End: Original strand, 42930672 - 42930807
Alignment:
Q  28 gcgaggcgagttacggcggctaaactcctcagaggtgacgtgacacaaacccactgatgaagtaacctcaactcgccatggcgaatgaagttactcgcga 127  Q
    ||||||||||||| ||||| ||  ||| ||| || ||||||| |||||||||| ||  |||| |||||||||||||| ||||||||||||   |||||||    
T  42930672 gcgaggcgagttagggcggttagcctc-tcacagctgacgtggcacaaacccaatggcgaaggaacctcaactcgccctggcgaatgaaggagctcgcga 42930770  T
Q  128 ggcgagttgaggtagaataagaagtctataaatagcc 164  Q
    ||||||| || | ||||| |||| |||||||||||||    
T  42930771 ggcgagtagatgcagaatcagaattctataaatagcc 42930807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 63 - 164
Target Start/End: Complemental strand, 2158518 - 2158417
Alignment:
Q  63 tgacgtgacacaaacccactgatgaagtaacctcaactcgccatggcgaatgaagttactcgcgaggcgagttgaggtagaataagaagtctataaatag 162  Q
    ||||||| |||||||||| ||  |||| ||| |||||||||||||||||||||||   ||||||||||||||  ||| ||| | |||| |||||||||||    
T  2158518 tgacgtggcacaaacccaatggggaagaaacttcaactcgccatggcgaatgaagcagctcgcgaggcgagtgaaggcagactcagaattctataaatag 2158419  T
Q  163 cc 164  Q
    ||    
T  2158418 cc 2158417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 63 - 164
Target Start/End: Complemental strand, 2164934 - 2164833
Alignment:
Q  63 tgacgtgacacaaacccactgatgaagtaacctcaactcgccatggcgaatgaagttactcgcgaggcgagttgaggtagaataagaagtctataaatag 162  Q
    ||||||| |||||||||| ||  |||| ||| |||||||||||||||||||||||   ||||||||||||||  ||| ||| | |||| |||||||||||    
T  2164934 tgacgtggcacaaacccaatggggaagaaacttcaactcgccatggcgaatgaagcagctcgcgaggcgagtgaaggcagactcagaattctataaatag 2164835  T
Q  163 cc 164  Q
    ||    
T  2164834 cc 2164833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 63 - 164
Target Start/End: Complemental strand, 29485790 - 29485689
Alignment:
Q  63 tgacgtgacacaaacccactgatgaagtaacctcaactcgccatggcgaatgaagttactcgcgaggcgagttgaggtagaataagaagtctataaatag 162  Q
    ||||||| |||||||||| ||  |||| ||||||||||||||||||||||||||    ||||||||||||||||| | ||| | |||| | |||||||||    
T  29485790 tgacgtggcacaaacccaatggcgaaggaacctcaactcgccatggcgaatgaatgagctcgcgaggcgagttgatgcagagtcagaattgtataaatag 29485691  T
Q  163 cc 164  Q
    ||    
T  29485690 cc 29485689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 63 - 164
Target Start/End: Original strand, 34834127 - 34834228
Alignment:
Q  63 tgacgtgacacaaacccactgatgaagtaacctcaactcgccatggcgaatgaagttactcgcgaggcgagttgaggtagaataagaagtctataaatag 162  Q
    ||||||| |||||||||| ||  |||| ||| |||||||||||||||||||||||   ||||||||||||||  ||| ||| | |||| |||||||||||    
T  34834127 tgacgtggcacaaacccaatggggaagaaacttcaactcgccatggcgaatgaagcagctcgcgaggcgagtgaaggcagactcagaattctataaatag 34834226  T
Q  163 cc 164  Q
    ||    
T  34834227 cc 34834228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 63 - 164
Target Start/End: Original strand, 34840571 - 34840672
Alignment:
Q  63 tgacgtgacacaaacccactgatgaagtaacctcaactcgccatggcgaatgaagttactcgcgaggcgagttgaggtagaataagaagtctataaatag 162  Q
    ||||||| |||||||||| ||  |||| ||| |||||||||||||||||||||||   ||||||||||||||  ||| ||| | |||| |||||||||||    
T  34840571 tgacgtggcacaaacccaatggggaagaaacttcaactcgccatggcgaatgaagcagctcgcgaggcgagtgaaggcagactcagaattctataaatag 34840670  T
Q  163 cc 164  Q
    ||    
T  34840671 cc 34840672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 63 - 164
Target Start/End: Complemental strand, 45012890 - 45012789
Alignment:
Q  63 tgacgtgacacaaacccactgatgaagtaacctcaactcgccatggcgaatgaagttactcgcgaggcgagttgaggtagaataagaagtctataaatag 162  Q
    ||||||| |||||||||| ||  |||| ||| |||||||||||||||||||||||   ||||||||||||||  ||| ||| | |||| |||||||||||    
T  45012890 tgacgtggcacaaacccaatggggaagaaacttcaactcgccatggcgaatgaagcagctcgcgaggcgagtgaaggcagactcagaattctataaatag 45012791  T
Q  163 cc 164  Q
    ||    
T  45012790 cc 45012789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 63 - 164
Target Start/End: Complemental strand, 12951705 - 12951604
Alignment:
Q  63 tgacgtgacacaaacccactgatgaagtaacctcaactcgccatggcgaatgaagttactcgcgaggcgagttgaggtagaataagaagtctataaatag 162  Q
    ||||||| |||||||||| ||  |||| ||| ||||||||||||| |||||||||   ||||||||||||||  ||| ||| | |||| |||||||||||    
T  12951705 tgacgtggcacaaacccaatggggaagaaacttcaactcgccatgacgaatgaagcagctcgcgaggcgagtgaaggcagactcagaattctataaatag 12951606  T
Q  163 cc 164  Q
    ||    
T  12951605 cc 12951604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 63 - 164
Target Start/End: Complemental strand, 43268755 - 43268654
Alignment:
Q  63 tgacgtgacacaaacccactgatgaagtaacctcaactcgccatggcgaatgaagttactcgcgaggcgagttgaggtagaataagaagtctataaatag 162  Q
    ||||||| |||||||||| ||  |||| ||||||||||||||||||||| ||||    ||||||||||||||||| | ||| | |||| | |||||||||    
T  43268755 tgacgtggcacaaacccaatggcgaaggaacctcaactcgccatggcgattgaatgagctcgcgaggcgagttgatgcagagtcagaattgtataaatag 43268656  T
Q  163 cc 164  Q
    ||    
T  43268655 cc 43268654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 28 - 128
Target Start/End: Original strand, 13901253 - 13901353
Alignment:
Q  28 gcgaggcgagttacggcggctaaactcctcagaggtgacgtgacacaaacccactgatgaagtaacctcaactcgccatggcgaatgaagttactcgcga 127  Q
    ||||||||||| | ||||| | | | ||||| || ||||||| |||||||||| ||  |||||||| |||||||||||||| |||||||||  |||||||    
T  13901253 gcgaggcgagtgaaggcggtttagcccctcacagctgacgtggcacaaacccaatggggaagtaacttcaactcgccatggtgaatgaagtagctcgcga 13901352  T
Q  128 g 128  Q
    |    
T  13901353 g 13901353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 98 - 135
Target Start/End: Original strand, 36781448 - 36781485
Alignment:
Q  98 actcgccatggcgaatgaagttactcgcgaggcgagtt 135  Q
    ||||||||||||||||||  ||||||||||||||||||    
T  36781448 actcgccatggcgaatgattttactcgcgaggcgagtt 36781485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 98 - 135
Target Start/End: Original strand, 42930646 - 42930683
Alignment:
Q  98 actcgccatggcgaatgaagttactcgcgaggcgagtt 135  Q
    ||||||||||||||||||  ||||||||||||||||||    
T  42930646 actcgccatggcgaatgattttactcgcgaggcgagtt 42930683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0060 (Bit Score: 55; Significance: 3e-22; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 28 - 137
Target Start/End: Complemental strand, 16090 - 15980
Alignment:
Q  28 gcgaggcgagttacggcggc-taaactcctcagaggtgacgtgacacaaacccactgatgaagtaacctcaactcgccatggcgaatgaagttactcgcg 126  Q
    ||||||||||||| |||||| || |||||| | || ||||||| ||||||||||||| ||||| ||| |||||||||||||||||||||||   ||||||    
T  16090 gcgaggcgagttagggcggcctagactccttacagatgacgtggcacaaacccactggtgaaggaacttcaactcgccatggcgaatgaaggagctcgcg 15991  T
Q  127 aggcgagttga 137  Q
    |||||||||||    
T  15990 aggcgagttga 15980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0510 (Bit Score: 53; Significance: 5e-21; HSPs: 3)
Name: scaffold0510
Description:

Target: scaffold0510; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 28 - 164
Target Start/End: Original strand, 8182 - 8318
Alignment:
Q  28 gcgaggcgagttacggcggctaaactcctcagaggtgacgtgacacaaacccactgatgaagtaacctcaactcgccatggcgaatgaagttactcgcga 127  Q
    |||||| |||||| ||||| | ||||| ||| || ||| ||| |||||||||| || ||||| |||||||||||||||||||||||||||   |||||||    
T  8182 gcgaggggagttagggcggtttaactcttcacagatgatgtggcacaaacccaatggtgaaggaacctcaactcgccatggcgaatgaaggagctcgcga 8281  T
Q  128 ggcgagttgaggtagaataagaagtctataaatagcc 164  Q
    ||||| |||| |  |||| |||| |||||||||||||    
T  8282 ggcgatttgatgctgaatcagaattctataaatagcc 8318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0510; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 63 - 164
Target Start/End: Complemental strand, 1919 - 1818
Alignment:
Q  63 tgacgtgacacaaacccactgatgaagtaacctcaactcgccatggcgaatgaagttactcgcgaggcgagttgaggtagaataagaagtctataaatag 162  Q
    ||||||| |||||||||| ||  |||| ||||||||||||||||||||||||||    ||||||||||||||| | | ||| | |||| |||||||||||    
T  1919 tgacgtggcacaaacccaatggcgaaggaacctcaactcgccatggcgaatgaatgagctcgcgaggcgagtttatgcagagtcagaattctataaatag 1820  T
Q  163 cc 164  Q
    ||    
T  1819 cc 1818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0510; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 98 - 135
Target Start/End: Complemental strand, 1980 - 1943
Alignment:
Q  98 actcgccatggcgaatgaagttactcgcgaggcgagtt 135  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  1980 actcgccatggcgaatgaatttactcgcgaggcgagtt 1943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053 (Bit Score: 51; Significance: 7e-20; HSPs: 2)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 50 - 164
Target Start/End: Complemental strand, 71346 - 71232
Alignment:
Q  50 aactcctcagaggtgacgtgacacaaacccactgatgaagtaacctcaactcgccatggcgaatgaagttactcgcgaggcgagttgaggtagaataaga 149  Q
    ||||| ||| || ||||||| |||||||||| || ||||| |||||||||||||||||||||||||||   ||||||||||||||  | | ||||| |||    
T  71346 aactcttcacagatgacgtggcacaaacccaatggtgaaggaacctcaactcgccatggcgaatgaaggagctcgcgaggcgagtgcatgcagaatcaga 71247  T
Q  150 agtctataaatagcc 164  Q
    | |||||||||||||    
T  71246 attctataaatagcc 71232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 63 - 164
Target Start/End: Complemental strand, 50597 - 50496
Alignment:
Q  63 tgacgtgacacaaacccactgatgaagtaacctcaactcgccatggcgaatgaagttactcgcgaggcgagttgaggtagaataagaagtctataaatag 162  Q
    ||||||| |||||||||| ||  |||| ||| |||||||||||||||||||||||   ||||||||||||||  ||| ||| | |||| |||||||||||    
T  50597 tgacgtggcacaaacccaatggggaagaaacttcaactcgccatggcgaatgaagcagctcgcgaggcgagtgaaggcagactcagaattctataaatag 50498  T
Q  163 cc 164  Q
    ||    
T  50497 cc 50496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0513 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0513
Description:

Target: scaffold0513; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 63 - 164
Target Start/End: Original strand, 11471 - 11572
Alignment:
Q  63 tgacgtgacacaaacccactgatgaagtaacctcaactcgccatggcgaatgaagttactcgcgaggcgagttgaggtagaataagaagtctataaatag 162  Q
    ||||||| || |||||||||| ||||| |||| ||||||||||||||||||||||    | | |||||||||||| | ||||| |||| |||||||||||    
T  11471 tgacgtggcataaacccactggtgaaggaaccacaactcgccatggcgaatgaaggagtttgtgaggcgagttgatgcagaatcagaattctataaatag 11570  T
Q  163 cc 164  Q
    ||    
T  11571 cc 11572  T

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Target: scaffold0043 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 63 - 164
Target Start/End: Original strand, 4320 - 4421
Alignment:
Q  63 tgacgtgacacaaacccactgatgaagtaacctcaactcgccatggcgaatgaagttactcgcgaggcgagttgaggtagaataagaagtctataaatag 162  Q
    ||||||| |||||||||| ||  |||| ||| |||||||||||||||||||||||   ||||||||||||||  ||| ||| | |||| |||||||||||    
T  4320 tgacgtggcacaaacccaatggggaagaaacttcaactcgccatggcgaatgaagcagctcgcgaggcgagtgaaggcagactcagaattctataaatag 4419  T
Q  163 cc 164  Q
    ||    
T  4420 cc 4421  T

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Target: scaffold0475 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0475
Description:

Target: scaffold0475; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 63 - 137
Target Start/End: Complemental strand, 8688 - 8614
Alignment:
Q  63 tgacgtgacacaaacccactgatgaagtaacctcaactcgccatggcgaatgaagttactcgcgaggcgagttga 137  Q
    ||||||| |||||||||| ||  |||| ||||||||||||||||||||||||||    |||||||||||||||||    
T  8688 tgacgtggcacaaacccaatggcgaaggaacctcaactcgccatggcgaatgaatgagctcgcgaggcgagttga 8614  T

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Target: scaffold0202 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0202
Description:

Target: scaffold0202; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 78 - 135
Target Start/End: Complemental strand, 6978 - 6921
Alignment:
Q  78 ccactgatgaagtaacctcaactcgccatggcgaatgaagttactcgcgaggcgagtt 135  Q
    |||||| ||||| ||| ||||||||||||||||| || |  |||||||||||||||||    
T  6978 ccactggtgaagaaacatcaactcgccatggcgagtgcatctactcgcgaggcgagtt 6921  T

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Target: scaffold0343 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: scaffold0343
Description:

Target: scaffold0343; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 106 - 162
Target Start/End: Complemental strand, 3498 - 3442
Alignment:
Q  106 tggcgaatgaagttactcgcgaggcgagttgaggtagaataagaagtctataaatag 162  Q
    ||||||||||||   |||||||||||||||||  |||||| |||| |||||||||||    
T  3498 tggcgaatgaaggagctcgcgaggcgagttgatatagaattagaattctataaatag 3442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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