View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16554_low_51 (Length: 379)
Name: NF16554_low_51
Description: NF16554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16554_low_51 |
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Alignment Details
Target: chr8 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 1 - 362
Target Start/End: Original strand, 43076647 - 43077011
Alignment:
| Q |
1 |
ctggatttggaatgtctgccaatatgaccaaagtccaagaatcagaacaacaattcatgaaatgggtgaaatttgttggtggtctcaaacatactgtctt |
100 |
Q |
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| T |
43076647 |
ctggatttggaatgtctgccaatatgaccaaagtccaagaatcagaacaacaattcatgaaatgggtgaaatttgttggtggtctcaaacatactgtctt |
43076746 |
T |
|
| Q |
101 |
tagaacagccaaaaataagctttttccttcttatactttgaacgtttataaacattcaagtaaaggaggattttcatcaattcaagcagccattgattcc |
200 |
Q |
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| T |
43076747 |
tagaacagccaaaaataagctttttccttcttatactttgaacgtttataaacattcaagtaaaggaggattttcatcaattcaagcagccattgattcc |
43076846 |
T |
|
| Q |
201 |
cttcccttcattaatttagtgagagttgtcattaaggttcatgcaggggtttacacgtaagtacttgtgctattatac---nnnnnnnngttttgttatt |
297 |
Q |
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| T |
43076847 |
cttcccttcattaatttagtgagagttgtcattaaggttcatgcaggggtttacacgtaagtacttgtgctattatacttttttttttgtttttgttatt |
43076946 |
T |
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| Q |
298 |
attccattacaattttgtcacattctgttttatggccttagtttgttgatgtgagaggtggggtt |
362 |
Q |
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| T |
43076947 |
attccattacaattttgtcacattctgttttatggccttggtttgttcatgtgagaggtggggtt |
43077011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 43 - 263
Target Start/End: Complemental strand, 33966889 - 33966669
Alignment:
| Q |
43 |
cagaacaacaattcatgaaatgggtgaaatttgttggtggtctcaaacatactgtctttagaacagccaaaaataagctttttccttcttatactttgaa |
142 |
Q |
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| T |
33966889 |
cagaacaacaattcatgaaatgggtgagttttgttggtggtctcaaacacactgtttacaaggctgcaaaaaataagctatttgcttcttatactttgca |
33966790 |
T |
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| Q |
143 |
cgtttataaacattcaagtaaaggaggattttcat-caattcaagcagccattgattcccttcccttcattaatttagtgagagttgtcattaaggttca |
241 |
Q |
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|||| |||| || | | ||| |||||| || |||||||| ||||||||||| ||||| | ||| ||| | || ||||||||||| |||||||| |
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| T |
33966789 |
cgttgataagaatccttcttttgga-gattttgatacaattcaaaatgccattgattctcttccttccatcaatcttgttagagttgtcatcaaggttca |
33966691 |
T |
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| Q |
242 |
tgcaggggtttacacgtaagta |
263 |
Q |
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|||||| |||||||||| |||| |
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| T |
33966690 |
tgcaggagtttacacgtgagta |
33966669 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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