View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16554_low_52 (Length: 378)
Name: NF16554_low_52
Description: NF16554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16554_low_52 |
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Alignment Details
Target: chr7 (Bit Score: 299; Significance: 1e-168; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 1 - 359
Target Start/End: Complemental strand, 13707214 - 13706857
Alignment:
| Q |
1 |
tgtgatatgaaaattttcaacgagttcattgatggttttaggtttatagattccctcctaaatggtggaaggtcacacttttcaagatttgtaagtgaca |
100 |
Q |
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| T |
13707214 |
tgtgatatgaaaattttcaacgagttcattgatggttttatgtttatagattccttcctaaatggtggaaggtcacacttttcagtatttgtaagtgac- |
13707116 |
T |
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| Q |
101 |
ggccgacatgaaattaaatcccgatcatgaattaaacctacaaagaagagacgttaatttttatgacattgagaataacacattttagtaaaacatatta |
200 |
Q |
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| T |
13707115 |
gaccgacatgaaattaaatcccgatcatgaattaaacctacaaagaagagacgttaatttttatgacattgagaataacacattttagtaaaacatatta |
13707016 |
T |
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| Q |
201 |
tgattctacttgtctaaaatctgaaatcactagaaaaattatttgtgtcatcgtcatagaga--aaaacatacaaataaaagtaccataaattgtaaaag |
298 |
Q |
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| T |
13707015 |
tgattctacttgtctaaaatcttaaatcactagaaaaattaattgtgtcatcgtcatagagaaaaaaacatacaaat--aagtaccataaattgtaaaag |
13706918 |
T |
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| Q |
299 |
tttatatcataatttgtttttactctatctcggaaaatttaattgtgtcgtcgtcatagag |
359 |
Q |
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| T |
13706917 |
tttatatcataatttgtttttactctatctcggaaaatttaattgtgtcatcgtcatagag |
13706857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 233 - 289
Target Start/End: Complemental strand, 13706885 - 13706829
Alignment:
| Q |
233 |
gaaaaattatttgtgtcatcgtcatagagaaaaacatacaaataaaagtaccataaa |
289 |
Q |
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| T |
13706885 |
gaaaatttaattgtgtcatcgtcatagagaaaaacatacaaataaaagtaccataaa |
13706829 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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