View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16554_low_53 (Length: 372)
Name: NF16554_low_53
Description: NF16554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16554_low_53 |
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Alignment Details
Target: chr8 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 18 - 356
Target Start/End: Original strand, 12508873 - 12509210
Alignment:
| Q |
18 |
gttttggaagtggagtttatattattggaatgataaatgttagtgatatgttgtagtatttatatgtgtaaagttttggaattcagtgaaatatgattgc |
117 |
Q |
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| T |
12508873 |
gttttggaagtggagtttatattattggaatgataaatattggtgatatgttgtagtatttatatgtgtaaagttttggaattcagtgaaatatgattgc |
12508972 |
T |
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| Q |
118 |
aagaatatagaatataccaatctcatcaannnnnnnatttgtgcacgtatgtcttcaagtgtcttaacatttttaatacttatattgtgtgcttgatttg |
217 |
Q |
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| T |
12508973 |
aagaatatagaatatacccatctcatcaatttttttatttgtgcacgtatgtcttcaagtgtct-aacatttttaatacttatattgtgtgcttgatttg |
12509071 |
T |
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| Q |
218 |
tacttgcaagttgatctcccttcaacttggatgagtttatttggttagtgagaattcttccaacttggtaatatgtacactgttggtattttgggagaat |
317 |
Q |
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| T |
12509072 |
tacttgcaagttgatctcctttcaacttggatgagtttatttggttagtgagaattcttccaacttggtaatatgtacactgttggtattttgggacaat |
12509171 |
T |
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| Q |
318 |
ctaaatcaatcattatattgaactaagaacaaatacaca |
356 |
Q |
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| T |
12509172 |
ctaaatcaatcattatattgaactaagaacaaatacaca |
12509210 |
T |
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