View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16554_low_55 (Length: 369)
Name: NF16554_low_55
Description: NF16554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16554_low_55 |
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Alignment Details
Target: chr8 (Bit Score: 245; Significance: 1e-136; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 86 - 350
Target Start/End: Complemental strand, 45363087 - 45362823
Alignment:
| Q |
86 |
taaacaccattgagtttgattgaatactaaccaagactgtacatggccatgccaagccctgcatctgacaatatggaaatagacttttctatgataacag |
185 |
Q |
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| T |
45363087 |
taaacaccattgagttttattgaatactaaccaagactgaacatggccatgccaagccctgcatccgacaatatggaaatagactttgctatgataacag |
45362988 |
T |
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| Q |
186 |
gcatttcaatattccacctgaatgaaatgagtgaccaagttaggccgataatgctcgaatatgtgtttgggtttctgataagttttctccaaaccattat |
285 |
Q |
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| T |
45362987 |
gcatttcaatattccacctgaatgaaatgagtgaccaagttaggccgataatgctcgaatatgtgtttgggtttctgataagttttctccaaaccattat |
45362888 |
T |
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| Q |
286 |
caatatcagcctcgtcattatacttgctggtggcatcgtttttgctccaccttcctcccctctct |
350 |
Q |
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| T |
45362887 |
caatatcagcctcgtcattatacttgctggtggcatcgtttttgccccaccttcctcccctctct |
45362823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 20 - 55
Target Start/End: Complemental strand, 45363272 - 45363237
Alignment:
| Q |
20 |
ctgccatgaacagaatcataaaggaaaaggagcaaa |
55 |
Q |
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| T |
45363272 |
ctgccatgaacagaatcataaaggaaaaggagcaaa |
45363237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 49; Significance: 6e-19; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 201 - 321
Target Start/End: Complemental strand, 25040338 - 25040218
Alignment:
| Q |
201 |
acctgaatgaaatgagtgaccaagttaggccgataatgctcgaatatgtgtttgggtttctgataagttttctccaaaccattatcaatatcagcctcgt |
300 |
Q |
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| T |
25040338 |
acctgaatgaaaccaaagaccaagtgagaccaattaagctagaataagtgtttggatttctgataagttttctccaaaccataatcaatataagccttgt |
25040239 |
T |
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| Q |
301 |
cattatacttgctggtggcat |
321 |
Q |
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| T |
25040238 |
catcacactagctggtggcat |
25040218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 115 - 197
Target Start/End: Complemental strand, 25040782 - 25040700
Alignment:
| Q |
115 |
accaagactgtacatggccatgccaagccctgcatctgacaatatggaaatagacttttctatgataacaggcatttcaatat |
197 |
Q |
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| T |
25040782 |
accaagactgaacatagccatgccaagtcctgcatctgacagaatggaaatagactttgctataatggcaggcatttcaatat |
25040700 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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