View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16554_low_56 (Length: 365)
Name: NF16554_low_56
Description: NF16554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16554_low_56 |
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Alignment Details
Target: chr3 (Bit Score: 298; Significance: 1e-167; HSPs: 9)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 19 - 348
Target Start/End: Complemental strand, 24363047 - 24362718
Alignment:
| Q |
19 |
acacatttgatggaaacgaaagtgttgcttatagttcaagttactagcacttaaaataaatacattaactgtccctttataaaacatgaattttaaaaac |
118 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24363047 |
acacatttgatggaaacgaaagtgttgcttatagttcaagttactagcacttaaaataaatacattaactgtccctttataaaacatgaattttaaaaac |
24362948 |
T |
|
| Q |
119 |
taaatcttgcttgtatatcagttcaaagacacaaacatctcccgaacgcagttcactttcatttgcaaacaaggaccaacccgctgataggtggcgacca |
218 |
Q |
| |
|
|||||||||||||| | |||||||||||||||||||||||||||| ||||| |||||||| ||||||||||||||||||| |||||||||||||||||| |
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| T |
24362947 |
taaatcttgcttgtttgtcagttcaaagacacaaacatctcccgattgcagtccactttcacttgcaaacaaggaccaacctgctgataggtggcgacca |
24362848 |
T |
|
| Q |
219 |
tttttagcctcgtaataacggagcaatttcacagtccatgatcttttcccaatctgcagaaccacatacttctctttgttctcaataaccccttctaaat |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24362847 |
tttttagcctcgtaataacggagcaatttcacattccatgatcttttcccaatctgcagaaccacatacttctctttgttctcaataaccccttctaaat |
24362748 |
T |
|
| Q |
319 |
ttggtacacactgcatagaataaatagtat |
348 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
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| T |
24362747 |
ttggtacacactgcatagaataaatagtat |
24362718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 78 - 336
Target Start/End: Complemental strand, 24347036 - 24346778
Alignment:
| Q |
78 |
atacattaactgtccctttataaaacatgaattttaaaaactaaatcttgcttgtatatcagttcaaagacacaaacatctcccgaacgcagttcacttt |
177 |
Q |
| |
|
|||||||||||||| |||| || |||||| |||||||| ||||| | ||||| ||||||||||||||||||||||||||| | ||||| |||||| |
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| T |
24347036 |
atacattaactgtcacttttggtaatatgaatattaaaaaccaaatccttcttgtttatcagttcaaagacacaaacatctcctgcttgcagtccacttt |
24346937 |
T |
|
| Q |
178 |
catttgcaaacaaggaccaacccgctgataggtggcgaccatttttagcctcgtaataacggagcaatttcacagtccatgatcttttcccaatctgcag |
277 |
Q |
| |
|
| | ||||||||||||||||| || || ||| ||||| ||||| |||||||| ||||| |||||||||||| | ||||||||||||||||||||||||| |
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|
| T |
24346936 |
ctctagcaaacaaggaccaaccggccgaaaggcggcgaacatttctagcctcgcaataagggagcaatttcagattccatgatcttttcccaatctgcag |
24346837 |
T |
|
| Q |
278 |
aaccacatacttctctttgttctcaataaccccttctaaatttggtacacactgcatag |
336 |
Q |
| |
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| ||||||||| |||||||||||||||||||| | |||| |||||||||||||||||| |
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|
| T |
24346836 |
catcacatacttttctttgttctcaataaccccatttaaagttggtacacactgcatag |
24346778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 99 - 318
Target Start/End: Complemental strand, 24359451 - 24359232
Alignment:
| Q |
99 |
aaaacatgaattttaaaaactaaatcttgcttgtatatcagttcaaagacacaaacatctcccgaacgcagttcactttcatttgcaaacaaggaccaac |
198 |
Q |
| |
|
|||| ||||| ||||||||||||||||| ||||| ||| || |||||||||||||||||||| ||| |||||||| ||||||||||||| |||| |
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|
| T |
24359451 |
aaaatatgaactttaaaaactaaatcttccttgtttatgagctcaaagacacaaacatctccatgttttagtccactttcacttgcaaacaaggatcaac |
24359352 |
T |
|
| Q |
199 |
ccgctgataggtggcgaccatttttagcctcgtaataacggagcaatttcacagtccatgatcttttcccaatctgcagaaccacatacttctctttgtt |
298 |
Q |
| |
|
| || |||||| ||||||||||| | |||| |||||||||||||||||||| |||||||| |||||||||||||||||| |||| |||||||||||| |
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| T |
24359351 |
cggccgataggcggcgaccatttaaaatctcggaataacggagcaatttcacattccatgattttttcccaatctgcagaagaacattcttctctttgtt |
24359252 |
T |
|
| Q |
299 |
ctcaataaccccttctaaat |
318 |
Q |
| |
|
|||||||| ||||| ||||| |
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|
| T |
24359251 |
ctcaataatcccttttaaat |
24359232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 87 - 352
Target Start/End: Complemental strand, 24370541 - 24370275
Alignment:
| Q |
87 |
ctgtccctttataaaacatgaattttaaaaactaaatcttgcttgtatatcagttcaaagacacaaacatctcccgaacgcagttcactttcatttgcaa |
186 |
Q |
| |
|
||||| ||||| ||||||||||||||||||| ||||||| ||||| ||||| ||||||||||||||||||||| || |||| ||||||| |||||| |
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|
| T |
24370541 |
ctgtcactttagtaaacatgaattttaaaaaccaaatctttcttgtttatcaattcaaagacacaaacatctcctgatttcagtccactttctcttgcaa |
24370442 |
T |
|
| Q |
187 |
acaaggaccaacccgctgataggtggcgaccatttttagcctcgtaataacggagcaatttcacagtccatgatcttttcccaatctgcagaaccacata |
286 |
Q |
| |
|
| ||| |||| ||||| || ||| | || |||||||| |||| ||| |||| || | ||||||| |||||||||||||||||||| |||| | ||||| |
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|
| T |
24370441 |
ataagtaccagcccgcggaaaggcgacggccatttttgccctcataagaacgaagtagtttcacattccatgatcttttcccaatcagcagcatcacatt |
24370342 |
T |
|
| Q |
287 |
cttctctttgttctcaataaccccttctaaatttggtacacactgcatagaata-aatagtattatc |
352 |
Q |
| |
|
| || ||||||||||||||||||| ||||| ||||||| ||||||||| ||| |||| ||||||| |
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|
| T |
24370341 |
tgtgtccttgttctcaataaccccttttaaatctggtacagactgcatagtatataatactattatc |
24370275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 87 - 335
Target Start/End: Complemental strand, 24356134 - 24355886
Alignment:
| Q |
87 |
ctgtccctttataaaacatgaattttaaaaactaaatcttgcttgtatatcagttcaaagacacaaacatctcccgaacgcagttcactttcatttgcaa |
186 |
Q |
| |
|
|||||| |||| |||||||||| ||||||||||||| ||| ||||| ||||||||| ||||||||||||| ||| ||||| ||||||| |||||| |
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|
| T |
24356134 |
ctgtccttttagaaaacatgaactttaaaaactaaaccttccttgtttatcagttcgaagacacaaacatttccttgttgcagtccactttctcttgcaa |
24356035 |
T |
|
| Q |
187 |
acaaggaccaacccgctgataggtggcgaccatttttagcctcgtaataacggagcaatttcacagtccatgatcttttcccaatctgcagaaccacata |
286 |
Q |
| |
|
|||||||||| | || || ||| | ||||| | | || ||| ||| ||||||||||||| |||||||||||||||||||||| || | ||||| |
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|
| T |
24356034 |
acaaggaccatctggccgaaaggcgacgaccctgagtgtgcttgtaccaacagagcaatttcacattccatgatcttttcccaatctgaagcatcacatc |
24355935 |
T |
|
| Q |
287 |
cttctctttgttctcaataaccccttctaaatttggtacacactgcata |
335 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||| ||||||| |
|
|
| T |
24355934 |
cttctctttgttctcaataacccctttaaaatttggtacattctgcata |
24355886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 87 - 341
Target Start/End: Original strand, 24364002 - 24364256
Alignment:
| Q |
87 |
ctgtccctttataaaacatgaattttaaaaactaaatcttgcttgtatatcagttcaaagacacaaacatctcccgaacgcagttcactttcatttgcaa |
186 |
Q |
| |
|
||||| ||||| ||||||||| ||||||||| ||||||| ||||| ||||| ||||||||||||||||||||| || |||| |||||||| || || |
|
|
| T |
24364002 |
ctgtcactttagtaaacatgaactttaaaaaccaaatctttcttgtttatcaattcaaagacacaaacatctcctgatttcagtccactttcagttaaaa |
24364101 |
T |
|
| Q |
187 |
acaaggaccaacccgctgataggtggcgaccatttttagcctcgtaataacggagcaatttcacagtccatgatcttttcccaatctgcagaaccacata |
286 |
Q |
| |
|
||||| ||| || || || ||| | || || ||| |||| ||| |||| || ||||||||| |||||||||||||||||||| |||| | ||||| |
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|
| T |
24364102 |
acaagtgccagccagcagaaaggcgacggttatattttccctcataacaacgaagtaatttcacattccatgatcttttcccaatcagcagcatcacatt |
24364201 |
T |
|
| Q |
287 |
cttctctttgttctcaataaccccttctaaatttggtacacactgcatagaataa |
341 |
Q |
| |
|
| || ||||||||||||||||||| ||||| ||||||| ||||||||| |||| |
|
|
| T |
24364202 |
tgtgtccttgttctcaataaccccttttaaatctggtacagactgcatagtataa |
24364256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 87 - 310
Target Start/End: Complemental strand, 24352729 - 24352506
Alignment:
| Q |
87 |
ctgtccctttataaaacatgaattttaaaaactaaatcttgcttgtatatcagttcaaagacacaaacatctcccgaacgcagttcactttcatttgcaa |
186 |
Q |
| |
|
|||| |||||| |||||||||| |||||||||||||| || ||||| ||||||||||||||||||||||| | | | ||||| |||| |||||| | | |
|
|
| T |
24352729 |
ctgttcctttagaaaacatgaactttaaaaactaaattttccttgtttatcagttcaaagacacaaacattttcaggttgcagtccactctcatttacga |
24352630 |
T |
|
| Q |
187 |
acaaggaccaacccgctgataggtggcgaccatttttagcctcgtaataacggagcaatttcacagtccatgatcttttcccaatctgcagaaccacata |
286 |
Q |
| |
|
|||||||||| || ||||| ||| | ||||| | | | ||||||| || ||||||||||| |||||||||||| |||||||| || |||| || |
|
|
| T |
24352629 |
acaaggaccagccggctgaaaggcgacgacccgtctcacgctcgtaagaagcaagcaatttcaccttccatgatctttctccaatctgaagcaccagatt |
24352530 |
T |
|
| Q |
287 |
cttctctttgttctcaataacccc |
310 |
Q |
| |
|
|||||| ||||||||||||||||| |
|
|
| T |
24352529 |
cttctccttgttctcaataacccc |
24352506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 78 - 154
Target Start/End: Complemental strand, 24314138 - 24314062
Alignment:
| Q |
78 |
atacattaactgtccctttataaaacatgaattttaaaaactaaatcttgcttgtatatcagttcaaagacacaaac |
154 |
Q |
| |
|
|||||||||||||| |||| || ||||| |||||||| ||||| | ||||| ||||||||||||||||||||| |
|
|
| T |
24314138 |
atacattaactgtcacttttggtaatatgaacattaaaaaccaaatccttcttgtttatcagttcaaagacacaaac |
24314062 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 235 - 271
Target Start/End: Complemental strand, 24403649 - 24403613
Alignment:
| Q |
235 |
aacggagcaatttcacagtccatgatcttttcccaat |
271 |
Q |
| |
|
||||||||||||||||| |||||| |||||||||||| |
|
|
| T |
24403649 |
aacggagcaatttcacattccatgttcttttcccaat |
24403613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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