View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16554_low_57 (Length: 365)
Name: NF16554_low_57
Description: NF16554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16554_low_57 |
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Alignment Details
Target: chr7 (Bit Score: 278; Significance: 1e-155; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 1 - 344
Target Start/End: Original strand, 23407562 - 23407907
Alignment:
| Q |
1 |
gaacaaactggttcacctatgtacgattgaagaaagactagggagcatgtggcaatcttggagaaaaattactttaatgtctatggaggataataagtat |
100 |
Q |
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| T |
23407562 |
gaacaaactggttcacctatgtacgattgaagaaagactagggagcatgtggcaatcttggagaaaaattactttaatgtctatggaggataataagtat |
23407661 |
T |
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| Q |
101 |
atggttcaatttttataag-tgatcgggagagaatttttcaaggaagtccttgactaattgataaaa-taagattatcttgcagaacgttgctataggtg |
198 |
Q |
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| T |
23407662 |
atggttcaattgttataaggtgatctggagagaatttttcatggaagtacttgactaattgataaaaatatgatcatcttgcagaaggttgctataggtg |
23407761 |
T |
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| Q |
199 |
aagatcctatggttatccaaatgaacacagcggagatttgggttcaagttcatcaacttcccttcggcatcatcgatacaactatgggagcgttagttgg |
298 |
Q |
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| T |
23407762 |
aagatcctatggctatccaaatgaacacaacggagatttgggttcaagttcatcaatttcccttcggcatcatcgatacaactataggagcgttagttgg |
23407861 |
T |
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| Q |
299 |
aagtcatattggtggaatgaccaagtatgatgaggacaacaattat |
344 |
Q |
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| T |
23407862 |
aagtcatattggtggaatgatcaagtacgatgaggacaacaattat |
23407907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 195 - 317
Target Start/End: Complemental strand, 23408854 - 23408732
Alignment:
| Q |
195 |
ggtgaagatcctatggttatccaaatgaacacagcggagatttgggttcaagttcatcaacttcccttcggcatcatcgatacaactatgggagcgttag |
294 |
Q |
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| T |
23408854 |
ggtgaagaccatatggctatcccaatgaacacaatagatatttgggttcaagatcaccaacttccattcggtttcatggatacaactataggagctttag |
23408755 |
T |
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| Q |
295 |
ttggaagtcatattggtggaatg |
317 |
Q |
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| T |
23408754 |
ttggaagtcatatttgttgaatg |
23408732 |
T |
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Back To:
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