View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16554_low_58 (Length: 360)
Name: NF16554_low_58
Description: NF16554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16554_low_58 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 4 - 346
Target Start/End: Complemental strand, 11894764 - 11894419
Alignment:
| Q |
4 |
tgataagtgcaatagaaaactcagacacataagt-gaagaatcaggattcgtacctcctcaatcatggaagccaagatagcaaattcaaaatttcaggtg |
102 |
Q |
| |
|
||||||||||||||||||| ||||||||||||| ||||||||||| ||| ||||||||||||||||| |||||| ||||||| |||||||||||||||| |
|
|
| T |
11894764 |
tgataagtgcaatagaaaattcagacacataagaagaagaatcagggttcatacctcctcaatcatgggagccaacatagcaatttcaaaatttcaggtg |
11894665 |
T |
|
| Q |
103 |
agataaaatttctataccaaacttaatttaacccatcaaggaatgaaaccaacagag--gtaacacatttcaaaaattaatttgcataatgaatgtccta |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11894664 |
agataaaatttctataccaaacttaatttaacccattaaggaatgaaaccaacatagatgtaacacatttcaaaaattaatttgcataatgaatgtccta |
11894565 |
T |
|
| Q |
201 |
agtctctaattagggggatatacaaatcccttaatttgctgcttgaaataatccttctcagcattagccaaacgctctttgaacattgaccattcttttt |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11894564 |
agtctctaattagggggatatacaaatcccttaatttgctgcttgaaataatccttctctgcattagccaaacgctctttgaacattgaccattcttttt |
11894465 |
T |
|
| Q |
301 |
gacacctctctctcacctgatgcaaatcagattttggtatcaatct |
346 |
Q |
| |
|
|||||||||||||||||||||||||| || |||||||||||||||| |
|
|
| T |
11894464 |
gacacctctctctcacctgatgcaaagcaaattttggtatcaatct |
11894419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University