View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16554_low_60 (Length: 358)
Name: NF16554_low_60
Description: NF16554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16554_low_60 |
 | |
|
| [»] scaffold0613 (1 HSPs) |
| | |
|
| [»] scaffold0134 (1 HSPs) |
| | |
|
| [»] scaffold0054 (2 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 314; Significance: 1e-177; HSPs: 11)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 1 - 342
Target Start/End: Original strand, 9602650 - 9602991
Alignment:
| Q |
1 |
aattattcgtctctttatgatatgagatcaatgaaacggacccatttaacaccaccaagtttatccacaaagctttgaaacaatcatctaagtacgaggg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
9602650 |
aattattcgtctctttatgatatgagatcaatgaaacggacccatttaacaccaccaagtttatccacaatgctttgaaacaatcatctaagtacgaggg |
9602749 |
T |
|
| Q |
101 |
tatgggtgttatgaagaatacctcattgctcaagtaaaatgataccaaacatcttccatcttgactatcttcatcttcttcacacaaccaatgacacaca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
9602750 |
tatgggtgttatgaagaatacctcattgctcaagtaaaatgataccaaccatcttccatcttgactatcttcatcttcttcccacaaccaatgacacaca |
9602849 |
T |
|
| Q |
201 |
ccatccatgtagacttgactgccgtcaatatgtgccaaggaacaaggcatgtcaaaaataagtatccttttccacgagttagttcttaagctatatttca |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9602850 |
ccatccatgtagacttgactgccgtcaataagtgccaaggaataaggcatgtcaaaaataagtatccttttccacgagttagttcttaagctatatttca |
9602949 |
T |
|
| Q |
301 |
cccaaattggatctaaagacatatgtccatagctagtgtgtt |
342 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||| ||||| |
|
|
| T |
9602950 |
cccaaattgggtctaaagacatatgtccatagctagcgtgtt |
9602991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 9 - 333
Target Start/End: Original strand, 9593849 - 9594179
Alignment:
| Q |
9 |
gtctctttatgatatgagatcaatgaaacggacccatttaacaccaccaagtttatccacaaagcttt------gaaacaatcatctaagtacgagggta |
102 |
Q |
| |
|
||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| || | |||||||||||| ||||| ||||| | |
|
|
| T |
9593849 |
gtctctttatgatatgagatcaatgcaaaggacccatttaacaccaccaagtttatccacaatgcgtgaagatcgaaacaatcatccaagtatgagggaa |
9593948 |
T |
|
| Q |
103 |
tgggtgttatgaagaatacctcattgctcaagtaaaatgataccaaacatcttccatcttgactatcttcatcttcttcacacaaccaatgacacacacc |
202 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||| |||||||||||| ||| || |||| ||| |||||||| |||||||||||||||||| |
|
|
| T |
9593949 |
tgggtgttatgaagaacacctcattgctcaagtaaaaggataccaaacatggtccctccaaggtatcatcaacttcttcagccaaccaatgacacacacc |
9594048 |
T |
|
| Q |
203 |
atccatgtagacttgactgccgtcaatatgtgccaaggaacaaggcatgtcaaaaa---taagtatccttttccacgagttagttcttaagctatatttc |
299 |
Q |
| |
|
|||||||||||||||| ||||||||||| ||||||| |||||||||||| |||||| ||||||||| |||||||||||||||||||||||||| || |
|
|
| T |
9594049 |
atccatgtagacttgagtgccgtcaatacgtgccaatgaacaaggcatgccaaaaacattaagtatcc---tccacgagttagttcttaagctatatatc |
9594145 |
T |
|
| Q |
300 |
acccaaattggatctaaagacatatgtccatagc |
333 |
Q |
| |
|
||||||||||| ||||||||||||| |||||||| |
|
|
| T |
9594146 |
acccaaattgggtctaaagacatatctccatagc |
9594179 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 1 - 296
Target Start/End: Complemental strand, 9569204 - 9568903
Alignment:
| Q |
1 |
aattattcgtctctttatgatatgagatcaatgaaacggacccatttaacaccaccaagtttatccacaaagcttt------gaaacaatcatctaagta |
94 |
Q |
| |
|
||||| ||||||||| ||||||||||||||| | || || ||| |||||||||||||||||||||||||| |||| |||||||||||| ||||| |
|
|
| T |
9569204 |
aattagtcgtctcttcatgatatgagatcaacgcaatggccccgtttaacaccaccaagtttatccacaatgcttgaacatcgaaacaatcatccaagta |
9569105 |
T |
|
| Q |
95 |
cgagggtatgggtgttatgaagaatacctcattgctcaagtaaaatgataccaaacatcttccatcttgactatcttcatcttcttcacacaaccaatga |
194 |
Q |
| |
|
||||| | |||||||||||||||| ||||||||||||||||||||||||||||||| |||||| ||||||||||| ||||||||||||||||||||| |
|
|
| T |
9569104 |
tgagggaacgggtgttatgaagaatttctcattgctcaagtaaaatgataccaaacatggtccatcctgactatcttcttcttcttcacacaaccaatga |
9569005 |
T |
|
| Q |
195 |
cacacaccatccatgtagacttgactgccgtcaatatgtgccaaggaacaaggcatgtcaaaaa---taagtatccttttccacgagttagttcttaagc |
291 |
Q |
| |
|
|||||||||| ||||||||||||| ||||||||||| |||||| ||| ||||||||||||||| |||||||| ||||||||||||||||||||| |
|
|
| T |
9569004 |
cacacaccattcatgtagacttgagtgccgtcaatacatgccaaagaataaggcatgtcaaaaacatcaagtatcc---tccacgagttagttcttaagc |
9568908 |
T |
|
| Q |
292 |
tatat |
296 |
Q |
| |
|
||||| |
|
|
| T |
9568907 |
tatat |
9568903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 7 - 342
Target Start/End: Original strand, 9582054 - 9582395
Alignment:
| Q |
7 |
tcgtctctttatgatatgagatcaatgaaacggacccatttaacaccaccaagtttatccacaaagctt------tgaaacaatcatctaagtacgaggg |
100 |
Q |
| |
|
||||||||| ||||||||||||||||| || |||||||||||||||| |||||||||||||||| | | ||||||||||||||||||| ||||| |
|
|
| T |
9582054 |
tcgtctcttcatgatatgagatcaatgcaatggacccatttaacaccgccaagtttatccacaaggtgtgaagattgaaacaatcatctaagtatgaggg |
9582153 |
T |
|
| Q |
101 |
tatgggtgttatgaagaatacctcattgctcaagtaaaatgataccaaacatcttccatcttgactatcttcatcttcttcacacaaccaatgacacaca |
200 |
Q |
| |
|
|||| ||||||||||||| ||||||||||||||||||||||||||| |||| ||| || | |||| ||| |||||||| |||||||||||||||| |
|
|
| T |
9582154 |
tatgtatgttatgaagaattcctcattgctcaagtaaaatgataccacacatggtccctccagggtatcatcaacttcttcagccaaccaatgacacaca |
9582253 |
T |
|
| Q |
201 |
ccatccatgtagacttgactgccgtcaatatgtgccaaggaacaaggcatgtcaaaaa---taagtatccttttccacgagttagttcttaagctatatt |
297 |
Q |
| |
|
|||||||||||||||||| ||||||||||| ||||||| |||||||||||| | ||| |||||||| |||||||||||||||||||||||||| |
|
|
| T |
9582254 |
ccatccatgtagacttgagtgccgtcaatacgtgccaatgaacaaggcatgctagaaacatcaagtatcc---tccacgagttagttcttaagctatata |
9582350 |
T |
|
| Q |
298 |
tcacccaaattggatctaaagacatatgtccatagctagtgtgtt |
342 |
Q |
| |
|
||||||||||||| |||||||||||| |||||||| || ||||| |
|
|
| T |
9582351 |
tcacccaaattgggtctaaagacatacatccatagccagcgtgtt |
9582395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 7 - 342
Target Start/End: Original strand, 9587749 - 9588090
Alignment:
| Q |
7 |
tcgtctctttatgatatgagatcaatgaaacggacccatttaacaccaccaagtttatccacaaagctt------tgaaacaatcatctaagtacgaggg |
100 |
Q |
| |
|
||||||||| ||||||||||||||||| || |||||||||||||||| |||||||||||||||| | | ||||||||||||||||||| ||||| |
|
|
| T |
9587749 |
tcgtctcttcatgatatgagatcaatgcaatggacccatttaacaccgccaagtttatccacaaggtgtgaagattgaaacaatcatctaagtatgaggg |
9587848 |
T |
|
| Q |
101 |
tatgggtgttatgaagaatacctcattgctcaagtaaaatgataccaaacatcttccatcttgactatcttcatcttcttcacacaaccaatgacacaca |
200 |
Q |
| |
|
|||| ||||||||||||| ||||||||||||||||||||||||||| |||| ||| || | |||| ||| |||||||| |||||||||||||||| |
|
|
| T |
9587849 |
tatgtatgttatgaagaattcctcattgctcaagtaaaatgataccacacatggtccctccagggtatcatcaacttcttcagccaaccaatgacacaca |
9587948 |
T |
|
| Q |
201 |
ccatccatgtagacttgactgccgtcaatatgtgccaaggaacaaggcatgtcaaaaa---taagtatccttttccacgagttagttcttaagctatatt |
297 |
Q |
| |
|
|||||||||||||||||| ||||||||||| ||||||| |||||||||||| | ||| |||||||| |||||||||||||||||||||||||| |
|
|
| T |
9587949 |
ccatccatgtagacttgagtgccgtcaatacgtgccaatgaacaaggcatgctagaaacatcaagtatcc---tccacgagttagttcttaagctatata |
9588045 |
T |
|
| Q |
298 |
tcacccaaattggatctaaagacatatgtccatagctagtgtgtt |
342 |
Q |
| |
|
||||||||||||| |||||||||||| |||||||| || ||||| |
|
|
| T |
9588046 |
tcacccaaattgggtctaaagacatacatccatagccagcgtgtt |
9588090 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 77 - 336
Target Start/End: Complemental strand, 9574253 - 9573994
Alignment:
| Q |
77 |
gaaacaatcatctaagtacgagggtatgggtgttatgaagaatacctcattgctcaagtaaaatgataccaaacatcttccatcttgactatcttcatct |
176 |
Q |
| |
|
||||| |||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| || |||||||||||||||| || |
|
|
| T |
9574253 |
gaaactatcatctaagtatgagggtatgggtgttatgaagaattcctcattgctcaagtaaaatgataccaaacatgctcgatcttgactatcttcacct |
9574154 |
T |
|
| Q |
177 |
tcttcacacaaccaatgacacacaccatccatgtagacttgactgccgtcaatatgtgccaaggaacaaggcatgtcaaaaa---taagtatccttttcc |
273 |
Q |
| |
|
||||||||| | ||||||||||||||||||||| | |||||| ||||||||||| |||||| ||| ||||||||||||||| |||||||| ||| |
|
|
| T |
9574153 |
tcttcacactatcaatgacacacaccatccatgcaaacttgagtgccgtcaatacctgccaacgaataaggcatgtcaaaaacatcaagtatcc---tcc |
9574057 |
T |
|
| Q |
274 |
acgagttagttcttaagctatatttcacccaaattggatctaaagacatatgtccatagctag |
336 |
Q |
| |
|
||||||||||||||||||||||| || |||| | ||| ||||||||||||| ||| ||||||| |
|
|
| T |
9574056 |
acgagttagttcttaagctatatatctcccagaatgggtctaaagacatatttccgtagctag |
9573994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 11 - 216
Target Start/End: Original strand, 54295156 - 54295367
Alignment:
| Q |
11 |
ctctttatgatatgagatcaatgaaacggacccatttaacaccaccaagtttatccacaaagctttga------aacaatcatctaagtacgagggtatg |
104 |
Q |
| |
|
||||| ||||||||||||||||| || | ||||||||| ||| ||||| |||||||||| |||| | ||||||||||||||| |||| |||| |
|
|
| T |
54295156 |
ctcttcatgatatgagatcaatgcaatgcacccatttagtaccgccaaggttatccacaatgcttgaacatcaaaacaatcatctaagtttgaggatatg |
54295255 |
T |
|
| Q |
105 |
ggtgttatgaagaatacctcattgctcaagtaaaatgataccaaacatcttccatcttgactatcttcatcttcttcacacaaccaatgacacacaccat |
204 |
Q |
| |
|
||||||||||| || | ||||||||||||||||||||||||||||||| ||||| || ||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
54295256 |
ggtgttatgaaaaacatctcattgctcaagtaaaatgataccaaacatggtccatgcagattatcttcatgcacttcacacaaccaatgacacacaccat |
54295355 |
T |
|
| Q |
205 |
ccatgtagactt |
216 |
Q |
| |
|
|||||||||||| |
|
|
| T |
54295356 |
ccatgtagactt |
54295367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 78 - 152
Target Start/End: Complemental strand, 37895910 - 37895836
Alignment:
| Q |
78 |
aaacaatcatctaagtacgagggtatgggtgttatgaagaatacctcattgctcaagtaaaatgataccaaacat |
152 |
Q |
| |
|
||||| |||||||||| |||||||||||||||| |||||| ||||||||||||| ||||||||||||||||||| |
|
|
| T |
37895910 |
aaacagtcatctaagtctgagggtatgggtgttacgaagaacacctcattgctcaggtaaaatgataccaaacat |
37895836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 114 - 217
Target Start/End: Complemental strand, 37897805 - 37897699
Alignment:
| Q |
114 |
aagaatacctcattgctcaagtaaaatgataccaaacatcttccatcttgacta---tcttcatcttcttcacacaaccaatgacacacaccatccatgt |
210 |
Q |
| |
|
||||| || |||||||||||||||||||| |||| |||| |||||| | ||| ||||||||||||| |||||||||||||||||| ||||||| || |
|
|
| T |
37897805 |
aagaacacatcattgctcaagtaaaatgacaccagacatggtccatcagggctatcttcttcatcttctttacacaaccaatgacacactccatccaagt |
37897706 |
T |
|
| Q |
211 |
agacttg |
217 |
Q |
| |
|
||||||| |
|
|
| T |
37897705 |
agacttg |
37897699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 7 - 76
Target Start/End: Complemental strand, 37897951 - 37897882
Alignment:
| Q |
7 |
tcgtctctttatgatatgagatcaatgaaacggacccatttaacaccaccaagtttatccacaaagcttt |
76 |
Q |
| |
|
||||||||| ||||||||||| ||||| || |||| ||| ||||||| |||||||||||||||||||||| |
|
|
| T |
37897951 |
tcgtctcttcatgatatgagaacaatgcaatggactcatataacaccgccaagtttatccacaaagcttt |
37897882 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 177 - 217
Target Start/End: Complemental strand, 37895793 - 37895753
Alignment:
| Q |
177 |
tcttcacacaaccaatgacacacaccatccatgtagacttg |
217 |
Q |
| |
|
||||||||||||||||||||||| ||||||| |||||||| |
|
|
| T |
37895793 |
tcttcacacaaccaatgacacacttcatccatatagacttg |
37895753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 68; Significance: 3e-30; HSPs: 23)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 78 - 217
Target Start/End: Complemental strand, 29131237 - 29131098
Alignment:
| Q |
78 |
aaacaatcatctaagtacgagggtatgggtgttatgaagaatacctcattgctcaagtaaaatgataccaaacatcttccatcttgactatcttcatctt |
177 |
Q |
| |
|
||||||||||||| || ||||||||||||||| ||| ||| || |||||||||||||||||||||||||||||| |||| || | ||||||| || |
|
|
| T |
29131237 |
aaacaatcatctacgtctgagggtatgggtgttgtgacgaacacttcattgctcaagtaaaatgataccaaacatggtccaatgggattttcttcatgtt |
29131138 |
T |
|
| Q |
178 |
cttcacacaaccaatgacacacaccatccatgtagacttg |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
29131137 |
tttcacacaaccaatgacacacaccatccatatagacttg |
29131098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 9 - 213
Target Start/End: Complemental strand, 34281922 - 34281712
Alignment:
| Q |
9 |
gtctctttatgatatgagatcaatgaaacggacccatttaacaccaccaagtttatccacaaagctttga------aacaatcatctaagtacgagggta |
102 |
Q |
| |
|
||||||||| ||||||||||||||| | | ||||||||||||||||||||||| ||||| ||||| | |||||||||||| || | ||||| |
|
|
| T |
34281922 |
gtctctttacgatatgagatcaatgctatgtacccatttaacaccaccaagtttttccactttgctttaacatcaaaacaatcatctacgtctgggggta |
34281823 |
T |
|
| Q |
103 |
tgggtgttatgaagaatacctcattgctcaagtaaaatgataccaaacatcttccatcttgactatcttcatcttcttcacacaaccaatgacacacacc |
202 |
Q |
| |
|
||| |||| ||||| | || |||||||||||||||||||||||||||||| |||| || |||||| || || |||||||||||||||||||||||| |
|
|
| T |
34281822 |
tggctgttgtgaaggacacttcattgctcaagtaaaatgataccaaacatggtccaatgggattatctttatgtttttcacacaaccaatgacacacacc |
34281723 |
T |
|
| Q |
203 |
atccatgtaga |
213 |
Q |
| |
|
|||||||||| |
|
|
| T |
34281722 |
gtccatgtaga |
34281712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 29012844 - 29012615
Alignment:
| Q |
1 |
aattattcgtctctttatgatatgagatcaatgaaacggacccatttaacaccaccaagtttatccacaaagct------ttgaaacaatcatctaagta |
94 |
Q |
| |
|
||||| ||||||||||||||||||||| ||||| || |||||||||||| ||| ||||||||| |||||| ||| | | ||||| |||| | |
|
|
| T |
29012844 |
aattagtcgtctctttatgatatgagaccaatgcaatggacccatttaataccgccaagtttaaccacaatgctaaatcatcagaccaatcctctacttc |
29012745 |
T |
|
| Q |
95 |
cgagggtatgggtgttatgaagaatacctcattgctcaagtaaaatgataccaaacatcttccatcttgactatcttcatcttcttcacacaaccaatga |
194 |
Q |
| |
|
|| |||| ||||||| ||||||| |||||||||| ||||||||||||||||||||| | | || | |||||||| |||| ||||||||||| |
|
|
| T |
29012744 |
tgacggtaagggtgttgtgaagaacccctcattgctaaagtaaaatgataccaaacatgattcctcattgctatcttc------ttcagacaaccaatga |
29012651 |
T |
|
| Q |
195 |
cacacaccatccatgtagacttgactgccgtcaata |
230 |
Q |
| |
|
||||| ||||||||||||||||| ||||||||||| |
|
|
| T |
29012650 |
cacactccatccatgtagacttgggtgccgtcaata |
29012615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 7 - 217
Target Start/End: Complemental strand, 29300084 - 29299865
Alignment:
| Q |
7 |
tcgtctctttatgatatgagatcaatgaaacggacccatttaacaccaccaagtttatccacaaagct------ttgaaacaatcatctaagtacgaggg |
100 |
Q |
| |
|
|||||| ||| ||| |||||||||| | || ||||||||||||||| |||||||||||||| ||| | |||||||||||| || ||||| |
|
|
| T |
29300084 |
tcgtctttttttgaaatgagatcaaggcaatggacccatttaacacagccaagtttatccactttgctccaacatcaaaacaatcatcttcgtccgagga |
29299985 |
T |
|
| Q |
101 |
tatgggtgttatgaagaatacctcattgctcaagtaaaatgataccaaacatcttccatcttgactatctt---catcttcttcacacaaccaatgacac |
197 |
Q |
| |
|
|| |||||||| | ||| ||||||||||||||||||||||| ||||||||| |||| | | |||| || |||||| ||||||||||||||| ||| |
|
|
| T |
29299984 |
aataggtgttataaggaacacctcattgctcaagtaaaatgacaccaaacatggtccagcggggctatgtttttcatctttttcacacaaccaatggcac |
29299885 |
T |
|
| Q |
198 |
acaccatccatgtagacttg |
217 |
Q |
| |
|
|| ||||||||||||||||| |
|
|
| T |
29299884 |
actccatccatgtagacttg |
29299865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 77 - 217
Target Start/End: Complemental strand, 29145226 - 29145083
Alignment:
| Q |
77 |
gaaacaatcatctaagtacgagggtatgggtgttatgaagaatacctcattgctcaagtaaaatgataccaaacatcttccatcttgact---atcttca |
173 |
Q |
| |
|
||||||||||||||||| |||||||||||||||| ||||| |||||| | |||||||||||||| ||||||||| |||||| || | |||||| |
|
|
| T |
29145226 |
gaaacaatcatctaagtctgagggtatgggtgttactaagaacacctcactactcaagtaaaatgacaccaaacatggtccatcaggattttcttcttca |
29145127 |
T |
|
| Q |
174 |
tcttcttcacacaaccaatgacacacaccatccatgtagacttg |
217 |
Q |
| |
|
|||| |||| |||||||||||||||| ||| ||| ||| ||||| |
|
|
| T |
29145126 |
tctttttcagacaaccaatgacacactccacccaggtatacttg |
29145083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 10 - 151
Target Start/End: Original strand, 34278522 - 34278669
Alignment:
| Q |
10 |
tctctttatgatatgagatcaatgaaacggacccatttaacaccaccaagtttatccac------aaagctttgaaacaatcatctaagtacgagggtat |
103 |
Q |
| |
|
||||||||||||||| |||||||| | ||||||||||||||||||||||||||||||| | | | ||||||||||||| | || ||| || |
|
|
| T |
34278522 |
tctctttatgatatgtgatcaatgctatggacccatttaacaccaccaagtttatccactttgcgctatcatcaaaacaatcatctacttccgggggaat |
34278621 |
T |
|
| Q |
104 |
gggtgttatgaagaatacctcattgctcaagtaaaatgataccaaaca |
151 |
Q |
| |
|
||||||| ||||| | | ||||||||||||||||||||||||||||| |
|
|
| T |
34278622 |
gggtgttgtgaaggacgcttcattgctcaagtaaaatgataccaaaca |
34278669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 7 - 152
Target Start/End: Original strand, 29152201 - 29152352
Alignment:
| Q |
7 |
tcgtctctttatgatatgagatcaatgaaacggacccatttaacaccaccaagtttatccacaaagcttt------gaaacaatcatctaagtacgaggg |
100 |
Q |
| |
|
||||||||| || |||||||||||||| | ||||||||||||||| |||||||||||||| ||||| ||||| ||||||| || | | | |
|
|
| T |
29152201 |
tcgtctcttcattatatgagatcaatgctatggacccatttaacacacccaagtttatccactttgctttaacatcaaaacagtcatctacgtctgggag |
29152300 |
T |
|
| Q |
101 |
tatgggtgttatgaagaatacctcattgctcaagtaaaatgataccaaacat |
152 |
Q |
| |
|
|||||||||| ||| | | || |||||||||||||||||||||||||||||| |
|
|
| T |
29152301 |
tatgggtgttgtgagggacacttcattgctcaagtaaaatgataccaaacat |
29152352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 40 - 152
Target Start/End: Original strand, 34258359 - 34258477
Alignment:
| Q |
40 |
acccatttaacaccaccaagtttatccacaaagctttga------aacaatcatctaagtacgagggtatgggtgttatgaagaatacctcattgctcaa |
133 |
Q |
| |
|
|||||||||||||| |||||||||||||| ||||| | |||||||||| | ||| |||||||| |||||| ||||||| || |||||||| || |
|
|
| T |
34258359 |
acccatttaacaccgccaagtttatccactttgctttaacatcaaaacaatcatcaacgtatgagggtattggtgttttgaagaacacatcattgcttaa |
34258458 |
T |
|
| Q |
134 |
gtaaaatgataccaaacat |
152 |
Q |
| |
|
|| |||||||||||||||| |
|
|
| T |
34258459 |
gtcaaatgataccaaacat |
34258477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 82 - 152
Target Start/End: Original strand, 23218748 - 23218818
Alignment:
| Q |
82 |
aatcatctaagtacgagggtatgggtgttatgaagaatacctcattgctcaagtaaaatgataccaaacat |
152 |
Q |
| |
|
|||||||||||| || |||||||||||| ||||| ||||||||||||||||||||||| ||||||||| |
|
|
| T |
23218748 |
aatcatctaagtttgaaagtatgggtgttactaagaacacctcattgctcaagtaaaatgacaccaaacat |
23218818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 96 - 150
Target Start/End: Complemental strand, 29124032 - 29123978
Alignment:
| Q |
96 |
gagggtatgggtgttatgaagaatacctcattgctcaagtaaaatgataccaaac |
150 |
Q |
| |
|
||||||||||||||||||||||| || || |||||||||||||| |||||||||| |
|
|
| T |
29124032 |
gagggtatgggtgttatgaagaacacttcgttgctcaagtaaaacgataccaaac |
29123978 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 96 - 152
Target Start/End: Original strand, 25528975 - 25529031
Alignment:
| Q |
96 |
gagggtatgggtgttatgaagaatacctcattgctcaagtaaaatgataccaaacat |
152 |
Q |
| |
|
|||| ||||||||||| || ||| |||||||||||||||| |||||||||||||||| |
|
|
| T |
25528975 |
gaggatatgggtgttaggacgaacacctcattgctcaagttaaatgataccaaacat |
25529031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 101 - 152
Target Start/End: Original strand, 26090880 - 26090931
Alignment:
| Q |
101 |
tatgggtgttatgaagaatacctcattgctcaagtaaaatgataccaaacat |
152 |
Q |
| |
|
|||||||||||| ||||| |||||||||||||||| ||||||||||| |||| |
|
|
| T |
26090880 |
tatgggtgttataaagaacacctcattgctcaagttaaatgataccagacat |
26090931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 95 - 152
Target Start/End: Original strand, 32960902 - 32960959
Alignment:
| Q |
95 |
cgagggtatgggtgttatgaagaatacctcattgctcaagtaaaatgataccaaacat |
152 |
Q |
| |
|
|||| |||||||||||| | ||| |||||||||||||| |||||||||||||||||| |
|
|
| T |
32960902 |
cgagtgtatgggtgttacaaggaacacctcattgctcaaataaaatgataccaaacat |
32960959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 7 - 67
Target Start/End: Original strand, 32744932 - 32744992
Alignment:
| Q |
7 |
tcgtctctttatgatatgagatcaatgaaacggacccatttaacaccaccaagtttatcca |
67 |
Q |
| |
|
|||||| || || |||||||||||||| || |||||||||||||||| |||||||| |||| |
|
|
| T |
32744932 |
tcgtcttttcataatatgagatcaatgcaatggacccatttaacaccgccaagtttctcca |
32744992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 17 - 68
Target Start/End: Complemental strand, 29137278 - 29137227
Alignment:
| Q |
17 |
atgatatgagatcaatgaaacggacccatttaacaccaccaagtttatccac |
68 |
Q |
| |
|
||||||||| ||||||| || |||| ||||||||||||||||||||||||| |
|
|
| T |
29137278 |
atgatatgatatcaatgcaatggacaaatttaacaccaccaagtttatccac |
29137227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 182 - 213
Target Start/End: Original strand, 32960998 - 32961029
Alignment:
| Q |
182 |
acacaaccaatgacacacaccatccatgtaga |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
32960998 |
acacaaccaatgacacacaccatccatgtaga |
32961029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 17 - 63
Target Start/End: Original strand, 25319391 - 25319437
Alignment:
| Q |
17 |
atgatatgagatcaatgaaacggacccatttaacaccaccaagttta |
63 |
Q |
| |
|
||||||||||||||| | ||| |||||||||||||||||||||||| |
|
|
| T |
25319391 |
atgatatgagatcaaagcaacatacccatttaacaccaccaagttta |
25319437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 17 - 63
Target Start/End: Original strand, 26149084 - 26149130
Alignment:
| Q |
17 |
atgatatgagatcaatgaaacggacccatttaacaccaccaagttta |
63 |
Q |
| |
|
||||||||||||||| | ||| |||||||||||||||||||||||| |
|
|
| T |
26149084 |
atgatatgagatcaaagcaacatacccatttaacaccaccaagttta |
26149130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 96 - 150
Target Start/End: Original strand, 32745027 - 32745081
Alignment:
| Q |
96 |
gagggtatgggtgttatgaagaatacctcattgctcaagtaaaatgataccaaac |
150 |
Q |
| |
|
||||||| ||||||||||||||| | || |||||||||||||| |||||||||| |
|
|
| T |
32745027 |
gagggtacgggtgttatgaagaacccttctttgctcaagtaaaacgataccaaac |
32745081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 105 - 150
Target Start/End: Complemental strand, 29137178 - 29137133
Alignment:
| Q |
105 |
ggtgttatgaagaatacctcattgctcaagtaaaatgataccaaac |
150 |
Q |
| |
|
|||||||||||||| || ||| ||||||||||||| |||||||||| |
|
|
| T |
29137178 |
ggtgttatgaagaacacttcactgctcaagtaaaacgataccaaac |
29137133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 182 - 214
Target Start/End: Complemental strand, 29123928 - 29123896
Alignment:
| Q |
182 |
acacaaccaatgacacacaccatccatgtagac |
214 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| |
|
|
| T |
29123928 |
acacaaccaatgacacactccatccatgtagac |
29123896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 182 - 214
Target Start/End: Complemental strand, 29137083 - 29137051
Alignment:
| Q |
182 |
acacaaccaatgacacacaccatccatgtagac |
214 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| |
|
|
| T |
29137083 |
acacaaccaatgacacactccatccatgtagac |
29137051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 182 - 214
Target Start/End: Original strand, 32745131 - 32745163
Alignment:
| Q |
182 |
acacaaccaatgacacacaccatccatgtagac |
214 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| |
|
|
| T |
32745131 |
acacaaccaatgacacactccatccatgtagac |
32745163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0613 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold0613
Description:
Target: scaffold0613; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 78 - 152
Target Start/End: Complemental strand, 126 - 52
Alignment:
| Q |
78 |
aaacaatcatctaagtacgagggtatgggtgttatgaagaatacctcattgctcaagtaaaatgataccaaacat |
152 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||| ||||| ||||||||||||||||||||||| ||||||||| |
|
|
| T |
126 |
aaacaatcatctaagtttgagggtatgggtgttattaagaacacctcattgctcaagtaaaatgacaccaaacat |
52 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0134 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold0134
Description:
Target: scaffold0134; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 78 - 152
Target Start/End: Original strand, 16374 - 16448
Alignment:
| Q |
78 |
aaacaatcatctaagtacgagggtatgggtgttatgaagaatacctcattgctcaagtaaaatgataccaaacat |
152 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||| ||||| ||||||||||||||||||||||| ||||||||| |
|
|
| T |
16374 |
aaacaatcatctaagtttgagggtatgggtgttattaagaacacctcattgctcaagtaaaatgacaccaaacat |
16448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0054 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: scaffold0054
Description:
Target: scaffold0054; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 78 - 217
Target Start/End: Original strand, 39967 - 40100
Alignment:
| Q |
78 |
aaacaatcatctaagtacgagggtatgggtgttatgaagaatacctcattgctcaagtaaaatgataccaaacatcttccatcttgactatcttcatctt |
177 |
Q |
| |
|
|||||||||||| | |||||||||||||||||| |||| |||||||| ||||||||||||||||| |||||| |||| | | || ||| | |
|
|
| T |
39967 |
aaacaatcatcttcatccgagggtatgggtgttatacagaacacctcatttctcaagtaaaatgatactaaacatggtccagcaggggta--ttc----t |
40060 |
T |
|
| Q |
178 |
cttcacacaaccaatgacacacaccatccatgtagacttg |
217 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
40061 |
cttcacacaaccaatgacacactccatccatgtagacttg |
40100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0054; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 95 - 217
Target Start/End: Original strand, 33633 - 33749
Alignment:
| Q |
95 |
cgagggtatgggtgttatgaagaatacctcattgctcaagtaaaatgataccaaacatcttccatcttgactatcttcatcttcttcacacaaccaatga |
194 |
Q |
| |
|
|||||||||||||||||| |||| |||||||| ||||||||||||||||| |||||| |||| | | || ||| |||||||||||||||||| |
|
|
| T |
33633 |
cgagggtatgggtgttatacagaacacctcatttctcaagtaaaatgatactaaacatggtccagcaggggta--ttc----tcttcacacaaccaatga |
33726 |
T |
|
| Q |
195 |
cacacaccatccatgtagacttg |
217 |
Q |
| |
|
||||| ||||||||||||||||| |
|
|
| T |
33727 |
cacactccatccatgtagacttg |
33749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 5e-16; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 77 - 152
Target Start/End: Complemental strand, 42446268 - 42446193
Alignment:
| Q |
77 |
gaaacaatcatctaagtacgagggtatgggtgttatgaagaatacctcattgctcaagtaaaatgataccaaacat |
152 |
Q |
| |
|
||||||| ||||||||| |||||||| ||||| |||||||||| ||||||||||||| |||||||||||||||| |
|
|
| T |
42446268 |
gaaacaaccatctaagtctgagggtataggtgtggtgaagaatacatcattgctcaagtcaaatgataccaaacat |
42446193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 152
Target Start/End: Complemental strand, 7793832 - 7793675
Alignment:
| Q |
1 |
aattattcgtctctttatgatatgagatcaatgaaacggacccatttaacaccaccaagtttatccacaaagctttgaa------acaatcatctaagta |
94 |
Q |
| |
|
||||||| ||| ||| |||| ||| |||||| |||| | | ||||||||||||||||| ||||||||| ||||||| || |||||||||| | |
|
|
| T |
7793832 |
aattattagtcacttcatgaaatgtgatcaaggaaatgtagccatttaacaccaccaaatttatccacgaagctttaaatttaaaacaatcatcttcatc |
7793733 |
T |
|
| Q |
95 |
cgagggtatgggtgttatgaagaatacctcattgctcaagtaaaatgataccaaacat |
152 |
Q |
| |
|
|| ||||| |||||||||||||| ||||||||||||||||||| |||| ||||||| |
|
|
| T |
7793732 |
tgaaggtataggtgttatgaagaacgcctcattgctcaagtaaaaagatagcaaacat |
7793675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 177 - 255
Target Start/End: Complemental strand, 42446150 - 42446072
Alignment:
| Q |
177 |
tcttcacacaaccaatgacacacaccatccatgtagacttgactgccgtcaatatgtgccaaggaacaaggcatgtcaa |
255 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||| |||| |||||| | |||| ||| |||||||||||| |
|
|
| T |
42446150 |
tcttcacacaaccaatgacacactccatccatgtagacttgggtgccctcaatacattccaaagaataaggcatgtcaa |
42446072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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