View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16554_low_62 (Length: 355)
Name: NF16554_low_62
Description: NF16554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16554_low_62 |
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Alignment Details
Target: chr1 (Bit Score: 295; Significance: 1e-166; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 1 - 335
Target Start/End: Original strand, 1464034 - 1464367
Alignment:
| Q |
1 |
gaaaacaaggtaggttattttccttttcactttatcatttcgtcacattgttgataaggacaagcctttgtgcaactgtaaggttgtcgacttatgttca |
100 |
Q |
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| T |
1464034 |
gaaaacaaggtaggttattttctttttcactttatcatttcgtcacattgttgataaggacaagcctttgtgcaactgtaaggttgtcgacttatgttca |
1464133 |
T |
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| Q |
101 |
aatattggaaataacctatctgtttgcagggataaggccgcgtacatatctaccttgtccatactccgcttgatgatagcctcgtgcacttgcannnnnn |
200 |
Q |
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| T |
1464134 |
aatattggaaataacctatctgtttgcagggataaggccgcgtacatatctaccttgtccatactccgcttgctgatagcctcgtgcacttgca-ttttt |
1464232 |
T |
|
| Q |
201 |
nnnccttttatctaattgtttcatattttctcgttacagactgccttcacatcaaagaaagactatggtagagaaaatagggaagcacaatgggcatcag |
300 |
Q |
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| T |
1464233 |
tttccttttatctaattgtttcatattttctcgttacagactgccttcacatcaaagaaagactatggtagagaaaatagggaagcacaatgggcatcag |
1464332 |
T |
|
| Q |
301 |
cgcaaagatcacgccatggtcttcagcctcctacc |
335 |
Q |
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| T |
1464333 |
cgcaaagatcacgccatggtcttcagcctcctacc |
1464367 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 236 - 331
Target Start/End: Complemental strand, 1495455 - 1495360
Alignment:
| Q |
236 |
acagactgccttcacatcaaagaaagactatggtagagaaaatagggaagcacaatgggcatcagcgcaaagatcacgccatggtcttcagcctcc |
331 |
Q |
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| T |
1495455 |
acagactgccttcactacaaagaaagactatggaaaagaagagagggaagcacaatgggcggctgcgcagagaacacttcacggtcttcagcctcc |
1495360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 89; Significance: 8e-43; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 24 - 329
Target Start/End: Original strand, 26791775 - 26792073
Alignment:
| Q |
24 |
ttttcactttatcatttcgtcacattgttgataaggacaagcctttgtgcaactgtaaggttgtcgacttatgttcaaatattggaaataacctatctgt |
123 |
Q |
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||||| ||||||||||| ||||| |||||||||||| |||||| | |||||| ||||||||| || |||||||||||||||||||| |||||| |
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| T |
26791775 |
ttttcgctttatcatttggtcac---gttgataaggacgagccttggcgcaactctaaggttgttcac--atgttcaaatattggaaatagtatatctgc |
26791869 |
T |
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| Q |
124 |
ttgcagggataaggccgcgtacatatctaccttgtccatactccgcttgatgatagcctcgtgcacttgcannnnnnnnnccttttatctaattgt-ttc |
222 |
Q |
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| T |
26791870 |
ttgtagggataaggctgcg---acatctaccttctccgaactcctcttgacgggagcctcgtgcacttgcattttttttctttgttatctaatcgtgttt |
26791966 |
T |
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| Q |
223 |
atattttctcgttacagactgccttcacatcaaagaaagactatggtagagaaaatagggaagcacaatgggcatcagcgcaaagatcacgccatggtct |
322 |
Q |
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| T |
26791967 |
atattttctcattacagactgccttcacttcaaagaaagactatggtagagaacagagggaagcacaatgggcatcaacacaaagatcaattcatggtct |
26792066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 235 - 268
Target Start/End: Original strand, 50277990 - 50278023
Alignment:
| Q |
235 |
tacagactgccttcacatcaaagaaagactatgg |
268 |
Q |
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| T |
50277990 |
tacagactgccttcacaacaaagaaagactatgg |
50278023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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