View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16554_low_63 (Length: 354)
Name: NF16554_low_63
Description: NF16554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16554_low_63 |
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Alignment Details
Target: chr1 (Bit Score: 310; Significance: 1e-174; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 1 - 346
Target Start/End: Complemental strand, 45700772 - 45700427
Alignment:
| Q |
1 |
ctgatggctcattctttatctctgatcgctcaaaacataagtagagatcaacggaagactgcattatttgtgagtccaaaaatacttgcnnnnnnnngaa |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| |
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| T |
45700772 |
ctgatggctcattctttatctctgatcgctcaaaacataagtagagatcaacggaagactgcattatttgtgagtccaaaaatacttacaaaaaaaagaa |
45700673 |
T |
|
| Q |
101 |
gcaaaacacctaggtaacactccatcgtgttcccttgctaggtactagtactacactctaaccatctctgtctcggtcttgcactctatccattttttaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45700672 |
gcaaaacacctaggtaacactccatcgtgttcccttgctaggtactagtactacactctaaccatctctgtctcggtcttgcactctatccattttttaa |
45700573 |
T |
|
| Q |
201 |
cttattttcccaagtagaaccaagaacacactactatccatcatttatatgatagtgtgtcaaaaagaaaagataaaatgaaaattaagacaaatcgtta |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
45700572 |
cttattttcccaagtagaaccaagaacacactactatccatcatttatatgatagtgtatcaaaaagaaaagataaaatgaaaattaagacaaatcgtta |
45700473 |
T |
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| Q |
301 |
caggtcaactcactagctgcaaatgtttgttatgttttctgtgctc |
346 |
Q |
| |
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|||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
45700472 |
caggtcaattcactagctgcaaatgtttgttatgttttctgtgctc |
45700427 |
T |
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