View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16554_low_64 (Length: 351)
Name: NF16554_low_64
Description: NF16554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16554_low_64 |
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Alignment Details
Target: chr3 (Bit Score: 167; Significance: 2e-89; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 165 - 335
Target Start/End: Complemental strand, 1248121 - 1247951
Alignment:
| Q |
165 |
tcaccataaacacccaaaaaatcacaaaacaattagtacattttcacaatacattcaattaaacaataaacagatcatacaatcaccttaaaattaataa |
264 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1248121 |
tcaccataaacacccaaaaaatcacaaaacaattagcacattttcacaatacattcaattaaacaataaacagatcatacaatcaccttaaaattaataa |
1248022 |
T |
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| Q |
265 |
gttaaaacctcaccaacttcaaacctatcattcttccattcattcattcatgattcatcaccccacataac |
335 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1248021 |
gttaaaacctcaccaacttcaaacctatcattcttccattcattcattcatgattcatcaccccacataac |
1247951 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 15 - 105
Target Start/End: Complemental strand, 1248271 - 1248181
Alignment:
| Q |
15 |
tcacaacacatccaactagcattaatttcacatcatacagttaacttgttaaaacctcacaaatatcattcatttacaattcatcaccccc |
105 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1248271 |
tcacaacacatccaactagcattaatttcacatcatacagttaacttgttaaaacctcacaaatatcattcatttacaattcatcaccccc |
1248181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 181 - 245
Target Start/End: Complemental strand, 1248681 - 1248616
Alignment:
| Q |
181 |
aaaaatcacaaaac-aattagtacattttcacaatacattcaattaaacaataaacagatcataca |
245 |
Q |
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||||||||||||| |||||| ||||||||||||||||||||||||| || ||||||||||||||| |
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| T |
1248681 |
aaaaatcacaaaatgaattagcacattttcacaatacattcaattaagcactaaacagatcataca |
1248616 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 159; Significance: 1e-84; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 165 - 335
Target Start/End: Complemental strand, 42014893 - 42014723
Alignment:
| Q |
165 |
tcaccataaacacccaaaaaatcacaaaacaattagtacattttcacaatacattcaattaaacaataaacagatcatacaatcaccttaaaattaataa |
264 |
Q |
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|
|||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
42014893 |
tcaccataaacacccaaaaaatcacaaaacaattagcacattttcacaatatattcaattaaacactaaacagatcatacaatcaccttaaaattaataa |
42014794 |
T |
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| Q |
265 |
gttaaaacctcaccaacttcaaacctatcattcttccattcattcattcatgattcatcaccccacataac |
335 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42014793 |
gttaaaacctcaccaacttcaaacctatcattcttccattcattcattcatgattcatcaccccacataac |
42014723 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 15 - 105
Target Start/End: Complemental strand, 42015043 - 42014953
Alignment:
| Q |
15 |
tcacaacacatccaactagcattaatttcacatcatacagttaacttgttaaaacctcacaaatatcattcatttacaattcatcaccccc |
105 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42015043 |
tcacaacacatccaactagcattaatttcacatcatacagttaacttgttaaaacctcacaaatatcattcatttacaattcatcaccccc |
42014953 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 181 - 257
Target Start/End: Complemental strand, 42015463 - 42015386
Alignment:
| Q |
181 |
aaaaatcacaaaac-aattagtacattttcacaatacattcaattaaacaataaacagatcatacaatcaccttaaaa |
257 |
Q |
| |
|
||||||||||||| |||||| |||||||||||| |||||||||||| || ||||||||||||||||| | ||||||| |
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| T |
42015463 |
aaaaatcacaaaatgaattagcacattttcacaacacattcaattaagcactaaacagatcatacaattaacttaaaa |
42015386 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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