View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16554_low_68 (Length: 342)
Name: NF16554_low_68
Description: NF16554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16554_low_68 |
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Alignment Details
Target: chr3 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 9 - 333
Target Start/End: Original strand, 34166828 - 34167152
Alignment:
| Q |
9 |
tcagtgagatgaacagagaatgcaagagtctggaacttttagctctacactgggagagtatgtccaacttatgaatttttagctaattaaactttccaat |
108 |
Q |
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| T |
34166828 |
tcagagagaagaacagagaatgcaagagtctggaacttttagctctacactgggagagtatgtccaacttatgaatttttagctaattaaactttccaat |
34166927 |
T |
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| Q |
109 |
gacgtaatttatttcttgagtgaaattagaaggttgtcgtgatcctactagagaaatggactnnnnnnnngcttataaagggtagacaatcctcagcatt |
208 |
Q |
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| T |
34166928 |
gacgtaatttatttcttgagtgaaattagaaggttgtcgtgatcctactagagaaatggactaaaaaaaagcttataaagggtagacaatcctcagcatt |
34167027 |
T |
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| Q |
209 |
taagccagtttgtcggggacgacttagactcaaacctaggatgatattataacctgataaatgtgnnnnnnnnacccatcagtaaaggtacaaactaaaa |
308 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
34167028 |
taagccagtttgtcggggacgacttagactcaaacctaggatgatattataacctgataaatgtgttttttttacccatcagtaaaggtacaaactaaaa |
34167127 |
T |
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| Q |
309 |
tgttgcgtcctaggcatgatgatgt |
333 |
Q |
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||||||||||||||||||||||||| |
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| T |
34167128 |
tgttgcgtcctaggcatgatgatgt |
34167152 |
T |
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