View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16554_low_69 (Length: 340)
Name: NF16554_low_69
Description: NF16554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16554_low_69 |
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| [»] scaffold0602 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 290; Significance: 1e-163; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 12 - 326
Target Start/End: Original strand, 8616219 - 8616533
Alignment:
| Q |
12 |
atgaactctcataatagagaatgatgacatgacacctaaggaaaagaggtcctctcctctcagtctgttatttttagacatgaactctcaatcattcccc |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8616219 |
atgaactctcataatagagaatgatgacatgacacctaaggaaaagaggtcctctcctctcagtctgttatttttagacatgaactctcaatcattcccc |
8616318 |
T |
|
| Q |
112 |
atgccactcacctaatgtccgtttagctgttcctataaccctattacaaatggattttcatcataatcataatcacttttaaagagattcactcannnnn |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8616319 |
atgccactcacctaatgtccgtttagctgttcctataaccctgttacaaatggattttcatcataatcataatcacttttaaagagattcactcattttt |
8616418 |
T |
|
| Q |
212 |
nnatatgataaaccaagtgttaacattctatttcttcttttgaatttcagctaccttcactcaagcctgtataatggaaattctcacttcagttggttca |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8616419 |
ttatatgataaaccaagtgttaacattctatttcttcttttgaatttcagctaccttcactcaagcctgtataatggaaattctcacttcagttggttca |
8616518 |
T |
|
| Q |
312 |
aaactagttgagttt |
326 |
Q |
| |
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||||||||||||||| |
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| T |
8616519 |
aaactagttgagttt |
8616533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 92 - 326
Target Start/End: Complemental strand, 8642749 - 8642517
Alignment:
| Q |
92 |
tgaactctcaatcattccccatgccactcacctaatgtccgtttagctgttcctataaccctattacaaatggattttcatcataatcataatcactttt |
191 |
Q |
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||||| |||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||| ||| | |||||||| ||||||||||||||||||||| |
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| T |
8642749 |
tgaaccctcaatcattccccataccactcacctactgtccatttagctgttcctataaccctgttaga--tggattttaatcataatcataatcactttt |
8642652 |
T |
|
| Q |
192 |
aaagagattcactcannnnnnnatatgataaaccaagtgttaacattctatttcttcttttgaatttcagctaccttcactcaagcctgtataatggaaa |
291 |
Q |
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||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8642651 |
aaactgattcactcattttattatatgataaaccaagtgttaacattctatttcttcttttgaatttcagctaccttcactcaagcctgtataatggaaa |
8642552 |
T |
|
| Q |
292 |
ttctcacttcagttggttcaaaactagttgagttt |
326 |
Q |
| |
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||||||||||||||||||| ||| ||||||||||| |
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| T |
8642551 |
ttctcacttcagttggttccaaattagttgagttt |
8642517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 235 - 325
Target Start/End: Complemental strand, 34397089 - 34396998
Alignment:
| Q |
235 |
cattctatttcttcttttgaatttcagctaccttcactc-aagcctgtataatggaaattctcacttcagttggttcaaaactagttgagtt |
325 |
Q |
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| T |
34397089 |
cattctatttcttgttttgaatttcagcaatcttcactcaaacccaatataatggatattgttgcttcagttggttcaaaattagttgagtt |
34396998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 235 - 325
Target Start/End: Original strand, 8307883 - 8307974
Alignment:
| Q |
235 |
cattctatttcttcttttgaatttcagctaccttcactc-aagcctgtataatggaaattctcacttcagttggttcaaaactagttgagtt |
325 |
Q |
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||||||||||||| |||||||||||| | | |||||||| || || ||||||| || | | | |||||||||||||||||| |||||||||| |
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| T |
8307883 |
cattctatttcttgttttgaatttcaacaaacttcactcaaacccggtataatagataatgttacttcagttggttcaaaattagttgagtt |
8307974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 235 - 325
Target Start/End: Original strand, 8309020 - 8309111
Alignment:
| Q |
235 |
cattctatttcttcttttgaatttcagctaccttcactc-aagcctgtataatggaaattctcacttcagttggttcaaaactagttgagtt |
325 |
Q |
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|||||||||| || |||||||||||||| | |||||||| || || |||||||||| | | | ||| ||||||||||||| |||||||||| |
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| T |
8309020 |
cattctattttttgttttgaatttcagcaagcttcactcaaacccagtataatggataatattactatagttggttcaaaattagttgagtt |
8309111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 235 - 315
Target Start/End: Complemental strand, 8630752 - 8630671
Alignment:
| Q |
235 |
cattctatttcttcttttgaatttcagctaccttcactcaagc-ctgtataatggaaattctcacttcagttggttcaaaac |
315 |
Q |
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||||||||||||||||||||||||||| | ||||||||| | | |||||||| | || |||| ||| ||||||||||||| |
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| T |
8630752 |
cattctatttcttcttttgaatttcagaaagattcactcaacctcagtataatgtatatcctcaattctgttggttcaaaac |
8630671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 254 - 325
Target Start/End: Complemental strand, 34392951 - 34392879
Alignment:
| Q |
254 |
aatttcagctaccttcactcaagcct-gtataatggaaattctcacttcagttggttcaaaactagttgagtt |
325 |
Q |
| |
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||||||||| | |||||||||| || |||||||||| ||| | ||||||||||||||||| |||||||||| |
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| T |
34392951 |
aatttcagcaagcttcactcaaacccagtataatggatattgttgcttcagttggttcaaaattagttgagtt |
34392879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0602 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: scaffold0602
Description:
Target: scaffold0602; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 92 - 326
Target Start/End: Original strand, 6719 - 6953
Alignment:
| Q |
92 |
tgaactctcaatcattccccatgccactcacctaatgtccgtttagctgttcctataaccctattacaaatggattttcatcataatcataatcactttt |
191 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
6719 |
tgaactctcaatcattccccatgccactcacctaatgtccgtttagctgttcctataaccctgttacaaatggattttcatcataatcataatcactttt |
6818 |
T |
|
| Q |
192 |
aaagagattcactcannnnnnnatatgataaaccaagtgttaacattctatttcttcttttgaatttcagctaccttcactcaagcctgtataatggaaa |
291 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6819 |
aaagagattcactcatttttttatatgataaaccaagtgttaacattctatttcttcttttgaatttcagctaccttcactcaagcctgtataatggaaa |
6918 |
T |
|
| Q |
292 |
ttctcacttcagttggttcaaaactagttgagttt |
326 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
6919 |
ttctcacttcagttggttcaaaactagttgagttt |
6953 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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