View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16554_low_7 (Length: 675)
Name: NF16554_low_7
Description: NF16554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16554_low_7 |
 | |
|
| [»] scaffold0188 (1 HSPs) |
| | |
|
Alignment Details
Target: chr2 (Bit Score: 362; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 263 - 668
Target Start/End: Complemental strand, 2932640 - 2932235
Alignment:
| Q |
263 |
ttgtgctcaacttatgatcaaatcaagtgattgaactcaaatgtttaatgaacttcatcaaatttataaattgtttaggagaatccgagttcgattcttg |
362 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
2932640 |
ttgtgctcaacttatgatcaaatcaagtgattgaactcaaatgtttaatgaacttcatcaaatttataaattgtttaggagaacccgagttcgattcttg |
2932541 |
T |
|
| Q |
363 |
agtgaacaatgctggatcaaaatattattatctcacgacaccgaacgttgggttagcaagattaatcggaaagaagaagatcttcatccctctcatgcgg |
462 |
Q |
| |
|
|||||||||| || ||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||| ||||| |
|
|
| T |
2932540 |
agtgaacaattcttgatcaaaatatacttatctcacgacaccgaacgttgggttatcaagattaatcggaaagaagaagattttcatccctctcgtgcgg |
2932441 |
T |
|
| Q |
463 |
cggagggttcttcaggatgacagtaacatttgtgttagaggttgtggtttttcggaaacggcggtgcatttgtttttgggatgcaacatgttcggcggcc |
562 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2932440 |
cggagggttcttcaggatgacagtaacatttgtgttagaggttgtggttcttcggaaacggcggtgcatttgtttttgggatgcaacatgttcggcggcc |
2932341 |
T |
|
| Q |
563 |
tttggtctttcatctggaagtggctagacattactacaacatcgtttgagttgcacgctcactttcttcagtttggtcactatgctagtctacctcattc |
662 |
Q |
| |
|
|||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2932340 |
tttggtctctcatctggaagtggctaggcattactacaacatcgtttgagttgcacgctcactttcttcagtttggtcactatgctagtctacctcattc |
2932241 |
T |
|
| Q |
663 |
atctca |
668 |
Q |
| |
|
|||||| |
|
|
| T |
2932240 |
atctca |
2932235 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 148; E-Value: 9e-78
Query Start/End: Original strand, 6 - 193
Target Start/End: Complemental strand, 2932891 - 2932706
Alignment:
| Q |
6 |
agggacacaagcagccacgattagttaattttacacgagaaaggtaaatttttagttaccttacaaaattgtccatcattagtagtgtnnnnnnnnntac |
105 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
2932891 |
agggacacaagcagccaccattagttaattttacacgagaaaggtaaatttttagttaccttacaaaattgtccatcattagtagtgtaaaaaaa--tac |
2932794 |
T |
|
| Q |
106 |
aaattacaaaaattggaaaggagaagaaaatacttacttagtcacaaacatttcgacactttattatttaggcacaagtttacaattg |
193 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
2932793 |
aaattacaaaaattggaaaggagaagaaaatacttacttagtcacaaacattacgacactttattatttaggcacaagtttacaattg |
2932706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 51; Significance: 7e-20; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 521 - 668
Target Start/End: Complemental strand, 3903520 - 3903370
Alignment:
| Q |
521 |
cggcggtgcatttgtttttgggatgcaacatgttcggcggcctttggtctttcatctggaagtggctagacattactaca----acatcgtttgagttgc |
616 |
Q |
| |
|
||||||| |||||||||||||| |||||| | |||| | |||||||||| ||||||||||||| ||| ||||||||| || ||||||||||||| |
|
|
| T |
3903520 |
cggcggtacatttgtttttggggtgcaacctattcgacaacctttggtctctcatctggaagtgattaggcattactacggttgac-tcgtttgagttgc |
3903422 |
T |
|
| Q |
617 |
acgctcactttcttcagtttggtcactatgctagtctacctcattcatctca |
668 |
Q |
| |
|
|| |||||||||||| ||||||||||| | | ||||||||| ||||||||| |
|
|
| T |
3903421 |
gcgatcactttcttcaatttggtcactacgttggtctacctcgttcatctca |
3903370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0188 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0188
Description:
Target: scaffold0188; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 283 - 314
Target Start/End: Complemental strand, 16420 - 16389
Alignment:
| Q |
283 |
aatcaagtgattgaactcaaatgtttaatgaa |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
16420 |
aatcaagtgattgaactcaaatgtttaatgaa |
16389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 283 - 325
Target Start/End: Complemental strand, 42475018 - 42474976
Alignment:
| Q |
283 |
aatcaagtgattgaactcaaatgtttaatgaacttcatcaaat |
325 |
Q |
| |
|
|||||||||||| | |||||||| ||||||||||||||||||| |
|
|
| T |
42475018 |
aatcaagtgatttagctcaaatggttaatgaacttcatcaaat |
42474976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University