View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16554_low_70 (Length: 333)
Name: NF16554_low_70
Description: NF16554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16554_low_70 |
 | |
|
| [»] scaffold0003 (1 HSPs) |
| | |
|
| [»] scaffold0004 (1 HSPs) |
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|
Alignment Details
Target: scaffold0003 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 1 - 324
Target Start/End: Complemental strand, 9283 - 8966
Alignment:
| Q |
1 |
tttcctcctttagactccctttcccgttctctttctctttctcactatgtattttgtttttgttcttcaaagtatagaaagggggtgtgtgtgtgaaaaa |
100 |
Q |
| |
|
|||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
9283 |
tttcctccttcagactccctttcccattctctttctctttctcactatgtattttgtttttgttcttcaaagtatagaaagggg---tgtgtgtgaaaaa |
9187 |
T |
|
| Q |
101 |
gaataggaaccggttactaataattctcccacgaacttatttcctaacaatatgggacatagtggaaaatgggattgggaagaaacgtgggatgtttatt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| |||||| |
|
|
| T |
9186 |
gaataggaaccggttactaataattctcccactaacttatttcctaacaatatggaacatagtggaaaatgggattgggaagaaacgt-ggatctttatt |
9088 |
T |
|
| Q |
201 |
tccacaggtcaatcacttcctttgctctatgcttccttttgttttcctactttcttgctaatctgattatatattactctaataaattctagctagtaat |
300 |
Q |
| |
|
|||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||| |||||||||||| |
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|
| T |
9087 |
tccacacgccaatcacttcctttgctctatgcttccttttgttttcctactttcttgctaatcttat--tatattactctaataaatactagctagtaat |
8990 |
T |
|
| Q |
301 |
atctagtggcacatattcttcgac |
324 |
Q |
| |
|
||||||||||||||||| |||||| |
|
|
| T |
8989 |
atctagtggcacatatttttcgac |
8966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 1 - 324
Target Start/End: Complemental strand, 16420571 - 16420254
Alignment:
| Q |
1 |
tttcctcctttagactccctttcccgttctctttctctttctcactatgtattttgtttttgttcttcaaagtatagaaagggggtgtgtgtgtgaaaaa |
100 |
Q |
| |
|
|||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
16420571 |
tttcctccttcagactccctttcccattctctttctctttctcactatgtattttgtttttgttcttcaaagtatagaaagggg---tgtgtgtgaaaaa |
16420475 |
T |
|
| Q |
101 |
gaataggaaccggttactaataattctcccacgaacttatttcctaacaatatgggacatagtggaaaatgggattgggaagaaacgtgggatgtttatt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| |||||| |
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|
| T |
16420474 |
gaataggaaccggttactaataattctcccactaacttatttcctaacaatatggaacatagtggaaaatgggattgggaagaaacgt-ggatctttatt |
16420376 |
T |
|
| Q |
201 |
tccacaggtcaatcacttcctttgctctatgcttccttttgttttcctactttcttgctaatctgattatatattactctaataaattctagctagtaat |
300 |
Q |
| |
|
|||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||| |||||||||||| |
|
|
| T |
16420375 |
tccacacgccaatcacttcctttgctctatgcttccttttgttttcctactttcttgctaatcttat--tatattactctaataaatactagctagtaat |
16420278 |
T |
|
| Q |
301 |
atctagtggcacatattcttcgac |
324 |
Q |
| |
|
||||||||||||||||| |||||| |
|
|
| T |
16420277 |
atctagtggcacatatttttcgac |
16420254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 238; Significance: 1e-132; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 324
Target Start/End: Original strand, 5538194 - 5538515
Alignment:
| Q |
1 |
tttcctcctttagactccctttcccgttctctttctctttctcactatgtattttgtttttgttcttcaaagtatagaaagggggtgtgtgtgtgaaaaa |
100 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
5538194 |
tttcctccttcagactccctttcccgttctctttctctttctcactatgtattttgtttttgttcttcaaagtatagaaagggg---tgtgtgtgaaaag |
5538290 |
T |
|
| Q |
101 |
gaataggaaccggttactaataattctcccacgaacttatttcctaacaatatgggacatagtggaaaatgggattgggaagaaacgtgggatgtttatt |
200 |
Q |
| |
|
|||||||||| ||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
5538291 |
gaataggaactggttactaataattctcccactagcttatttcctaacaatatgggacatagtggaaaatgggattgggaagaaacgt-ggatgtttatt |
5538389 |
T |
|
| Q |
201 |
tccacaggtcaatcacttcc-tttgctctatgcttccttttgttttcctactttcttgctaatctgat--tatatattactctaataaattctagctagt |
297 |
Q |
| |
|
|||||| | ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||| ||||||||| |
|
|
| T |
5538390 |
tccacacg-caatcacttccttttgctctatgcttccttttgttttcctactttcttgctaatcttattatatatattactctaataaatactagctagt |
5538488 |
T |
|
| Q |
298 |
aatatctagtggcacatattcttcgac |
324 |
Q |
| |
|
|||||||| ||||||||||| |||||| |
|
|
| T |
5538489 |
aatatctaatggcacatatttttcgac |
5538515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 45 - 137
Target Start/End: Complemental strand, 44667810 - 44667720
Alignment:
| Q |
45 |
ctatgtattttgtttttgttcttcaaagtatagaaagggggtgtgtgtgtgaaaaagaataggaaccggtta--ctaataattctcccacgaact |
137 |
Q |
| |
|
|||||| ||||||||||||||||||||| |||||| | ||||||||||||| |||||||||||||||| ||||||| |||||||| |||| |
|
|
| T |
44667810 |
ctatgtcttttgtttttgttcttcaaagcatagaa----tgagtgtgtgtgaaaatgaataggaaccggttattctaataactctcccactaact |
44667720 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 57 - 116
Target Start/End: Complemental strand, 6816995 - 6816940
Alignment:
| Q |
57 |
tttttgttcttcaaagtatagaaagggggtgtgtgtgtgaaaaagaataggaaccggtta |
116 |
Q |
| |
|
||||||||||||||||||||||| || |||||||| |||||||||| |||||||||| |
|
|
| T |
6816995 |
tttttgttcttcaaagtatagaatgg----gtgtgtgttaaaaagaataagaaccggtta |
6816940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 106; Significance: 5e-53; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 134 - 287
Target Start/End: Complemental strand, 19932449 - 19932297
Alignment:
| Q |
134 |
aacttatttcctaacaatatgggacatagtggaaaatgggattgggaagaaacgtgggatgtttatttccacaggtcaatcacttcctttgctctatgct |
233 |
Q |
| |
|
|||||||||||||| ||||||| |||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| ||||||| ||||||||| |
|
|
| T |
19932449 |
aacttatttcctaaaaatatggaacatagtggaaaatgggattgggaagaaacgtgg-atgtttatttccactagtcaatcagttccttttctctatgct |
19932351 |
T |
|
| Q |
234 |
tccttttgttttcctactttcttgctaatctgattatatattactctaataaat |
287 |
Q |
| |
|
|||||||| ||||||||||| |||||||||| ||||||||||||| |||||||| |
|
|
| T |
19932350 |
tccttttgctttcctactttattgctaatcttattatatattactttaataaat |
19932297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 97; Significance: 1e-47; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 134 - 287
Target Start/End: Complemental strand, 18901668 - 18901509
Alignment:
| Q |
134 |
aacttatttcctaacaatatgggacatagtggaaaatgggattgggaagaaacgtggg------atgtttatttccacaggtcaatcacttcctttgctc |
227 |
Q |
| |
|
|||||||||||||| ||||||| |||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| ||||||| ||| |
|
|
| T |
18901668 |
aacttatttcctaaaaatatggaacatagtggaaaatgggattgggaagaaacgtggatgtttaatgtttatttccaccagtcaatcagttccttttctc |
18901569 |
T |
|
| Q |
228 |
tatgcttccttttgttttcctactttcttgctaatctgattatatattactctaataaat |
287 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||| ||||||||||||| |||||||| |
|
|
| T |
18901568 |
tatgcttccttttgctttcctactttcttgctaatcttattatatattactttaataaat |
18901509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 88 - 188
Target Start/End: Original strand, 51784667 - 51784772
Alignment:
| Q |
88 |
tgtgtgtgaaaaagaataggaaccggttacta-----ataattctcccacgaacttatttcctaacaatatgggacatagtggaaaatgggattgggaag |
182 |
Q |
| |
|
|||| |||||||||||||||||||||||| || |||| || ||| |||||||||||||| ||||||| |||||||||||||||||||||||||| |
|
|
| T |
51784667 |
tgtgggtgaaaaagaataggaaccggttattattataataacactgtcactaacttatttcctaaaaatatggaacatagtggaaaatgggattgggaag |
51784766 |
T |
|
| Q |
183 |
aaacgt |
188 |
Q |
| |
|
|||||| |
|
|
| T |
51784767 |
aaacgt |
51784772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 275 - 317
Target Start/End: Complemental strand, 18901487 - 18901445
Alignment:
| Q |
275 |
tactctaataaattctagctagtaatatctagtggcacatatt |
317 |
Q |
| |
|
||||||||||||| |||||||||||||||||||| |||||||| |
|
|
| T |
18901487 |
tactctaataaatactagctagtaatatctagtgtcacatatt |
18901445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 249 - 287
Target Start/End: Original strand, 51784794 - 51784832
Alignment:
| Q |
249 |
actttcttgctaatctgattatatattactctaataaat |
287 |
Q |
| |
|
|||||||||||||||| ||||||||||||| |||||||| |
|
|
| T |
51784794 |
actttcttgctaatcttattatatattactttaataaat |
51784832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 284 - 317
Target Start/End: Original strand, 51784859 - 51784892
Alignment:
| Q |
284 |
aaattctagctagtaatatctagtggcacatatt |
317 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| |
|
|
| T |
51784859 |
aaatactagctagtaatatctagtggcacatatt |
51784892 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 82; Significance: 1e-38; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 87 - 273
Target Start/End: Original strand, 37940325 - 37940512
Alignment:
| Q |
87 |
gtgtgtgtgaaaaagaataggaaccggttacta--ataattctcccacgaacttatttcctaacaatatgggacatagtggaaaatgggattgggaagaa |
184 |
Q |
| |
|
||||| |||||||||||||||||||||||| || |||| | ||| |||||||||||||| ||||||| ||||||||||||||| |||||||||||| |
|
|
| T |
37940325 |
gtgtgggtgaaaaagaataggaaccggttattataataacattgtcactaacttatttcctaaaaatatggaacatagtggaaaatgagattgggaagaa |
37940424 |
T |
|
| Q |
185 |
acgtgggatgtttatttccacaggtcaatcacttcctttgctctatgcttccttttgttttcctactttcttgctaatctgattatata |
273 |
Q |
| |
|
|||| |||||||||||||||| || ||||| ||||||| ||||||||| ||||| || ||||||||||||||||||| |||||||| |
|
|
| T |
37940425 |
acgt-ggatgtttatttccactagttaatcagttcctttttcctatgcttctttttgcttacctactttcttgctaatcttattatata |
37940512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 275 - 317
Target Start/End: Original strand, 37940550 - 37940592
Alignment:
| Q |
275 |
tactctaataaattctagctagtaatatctagtggcacatatt |
317 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
37940550 |
tactctaataaatactagctagtaatatctagtggcacatatt |
37940592 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 66; Significance: 4e-29; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 18 - 109
Target Start/End: Complemental strand, 3508754 - 3508666
Alignment:
| Q |
18 |
cctttcccgttctctttctctttctcactatgtattttgtttttgttcttcaaagtatagaaagggggtgtgtgtgtgaaaaagaataggaa |
109 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||| |
|
|
| T |
3508754 |
cctttcctattctctttctctttctcactatgtattttgtttttgttcttcaaagtatagaaaggg---gtgtgtgtgaaaaagagtaggaa |
3508666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 40 - 112
Target Start/End: Original strand, 34518720 - 34518788
Alignment:
| Q |
40 |
tctcactatgtattttgtttttgttcttcaaagtatagaaagggggtgtgtgtgtgaaaaagaataggaaccg |
112 |
Q |
| |
|
|||| |||||||||||| |||||||||||||||||||||| || || ||||||||||||||||||||||| |
|
|
| T |
34518720 |
tctctctatgtattttgattttgttcttcaaagtatagaatgg----gtatgtgtgaaaaagaataggaaccg |
34518788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0004 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: scaffold0004
Description:
Target: scaffold0004; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 2 - 111
Target Start/End: Original strand, 188973 - 189083
Alignment:
| Q |
2 |
ttcctcctttagactccctttcccgttctctttctctttctcactatgtattttgt-----ttttgttcttcaaagtatagaaagggggtgtgtgtgtga |
96 |
Q |
| |
|
|||||||||||||| ||||||||||||| ||||||||||||| ||||||||||||| |||||||||||||||||||||| || || ||||||| |
|
|
| T |
188973 |
ttcctcctttagaccccctttcccgttccctttctctttctccctatgtattttgtttttgttttgttcttcaaagtatagaatgg----gtatgtgtga |
189068 |
T |
|
| Q |
97 |
aaaagaataggaacc |
111 |
Q |
| |
|
|||| |||||||||| |
|
|
| T |
189069 |
aaaacaataggaacc |
189083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 2 - 49
Target Start/End: Original strand, 29963959 - 29964006
Alignment:
| Q |
2 |
ttcctcctttagactccctttcccgttctctttctctttctcactatg |
49 |
Q |
| |
|
||||||||| |||| ||||||||||||||||||||||||||| ||||| |
|
|
| T |
29963959 |
ttcctccttcagaccccctttcccgttctctttctctttctccctatg |
29964006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 27 - 112
Target Start/End: Complemental strand, 2038125 - 2038040
Alignment:
| Q |
27 |
ttctctttctctttctcactatgtattttgtttt-----tgttcttcaaagtatagaaagggggtgtgtgtgtgaaaaagaataggaaccg |
112 |
Q |
| |
|
|||||||||||||||| |||||||||||||||| ||||||||||||||||||| ||| |||||| |||||||||||||||| |
|
|
| T |
2038125 |
ttctctttctctttcttcctatgtattttgtttttgttttgttcttcaaagtatagaatgggtatgtgtg-----aaaagaataggaaccg |
2038040 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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