View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16554_low_72 (Length: 333)

Name: NF16554_low_72
Description: NF16554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16554_low_72
NF16554_low_72
[»] chr4 (14 HSPs)
chr4 (15-317)||(5035652-5035945)
chr4 (101-317)||(2525787-2526003)
chr4 (34-184)||(2536654-2536801)
chr4 (41-158)||(2486430-2486547)
chr4 (101-180)||(2491241-2491320)
chr4 (107-159)||(2625296-2625348)
chr4 (53-163)||(2519366-2519473)
chr4 (100-159)||(2467679-2467738)
chr4 (100-161)||(5101944-5102005)
chr4 (113-155)||(2547613-2547655)
chr4 (107-152)||(2380052-2380097)
chr4 (280-317)||(2491158-2491195)
chr4 (281-317)||(2486337-2486373)
chr4 (285-317)||(2536615-2536647)


Alignment Details
Target: chr4 (Bit Score: 175; Significance: 3e-94; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 15 - 317
Target Start/End: Complemental strand, 5035945 - 5035652
Alignment:
Q  15 ggcggaagaggaagcagataaaatagcagcagcagaggaaaaccctaagaaaggaaaaagaacaaaaatggcaacagcaacagaagcaacacgttcaaat 114  Q
    ||||| |||||||||||| |||||||||||| |||||||||||||||||||| ||||||         ||| ||||| ||||||||||||||||||||||    
T  5035945 ggcggcagaggaagcagagaaaatagcagcaacagaggaaaaccctaagaaacgaaaaa---------tgggaacagaaacagaagcaacacgttcaaat 5035855  T
Q  115 ttaccagaggatttatgggaacacatcttcaaattcctcaacgacgaggaaaacaacaccttcaaccttcctcgtcctgatgggaatctaggtttcaccg 214  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||| ||||| |||| ||||||| ||||||||||||||||  |||    
T  5035854 ttaccagaggatttatgggaaaacatcttcaaattcctcaacgacgaggagaacaacacattcaaacttcttcgtcctaatgggaatctaggttttgccg 5035755  T
Q  215 ataacccccgcagaataaggtctctctaccacgtctcaaaacaagatctgtccatcaccaacagtagtttcaggtctctctccctcgtttcaaaacagtt 314  Q
    || ||||||||||||||| ||||||||| ||||||||| |||||||| || | ||||| |||||||||||||||||||| ||| ||||||||||||||||    
T  5035754 atcacccccgcagaataaagtctctctatcacgtctcagaacaagatatgccaatcacaaacagtagtttcaggtctctttccttcgtttcaaaacagtt 5035655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 101 - 317
Target Start/End: Complemental strand, 2526003 - 2525787
Alignment:
Q  101 caacacgttcaaatttaccagaggatttatgggaacacatcttcaaattcctcaacgacgaggaaaacaacaccttcaaccttcctcgtcctgatgggaa 200  Q
    ||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| |||||||||    
T  2526003 caacacgttcatatttaccagaggagttatgggaacacatcttcaaattcctcaacgacgaggacaacaacaccttcaaccttcttcgtcttgatgggaa 2525904  T
Q  201 tctaggttt-caccgataacccccgcagaataaggtctctctaccacgtctcaaaacaagatctgtccatcaccaacagtagtttcaggtctctctccct 299  Q
    | ||||||| || | ||| ||  ||||||||| |  |||||||||||||||||||||||  |||  ||||||||||| |||||||||| |||||||||||    
T  2525903 tataggttttcaac-atatccagcgcagaataggaactctctaccacgtctcaaaacaatctctacccatcaccaacggtagtttcagatctctctccct 2525805  T
Q  300 cgtttcaaaacagtttct 317  Q
    ||| ||||||||||||||    
T  2525804 cgtctcaaaacagtttct 2525787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 34 - 184
Target Start/End: Complemental strand, 2536801 - 2536654
Alignment:
Q  34 aaaatagcagcagcagaggaaaaccctaagaaaggaaaaagaacaaaaatggcaacagcaacagaagcaacacgttcaaatttaccagaggatttatggg 133  Q
    ||||||| |||||||| | ||||||||| |||| |||||||||||||| |  |||||||||||    ||||||||||| ||||||||||||| |||||||    
T  2536801 aaaatagaagcagcagtgaaaaaccctaggaaacgaaaaagaacaaaattttcaacagcaacac---caacacgttcatatttaccagaggagttatggg 2536705  T
Q  134 aacacatcttcaaattcctcaacgacgaggaaaacaacaccttcaaccttc 184  Q
    || ||||||||||||| |||||| ||||||| | ||||||||||| |||||    
T  2536704 aatacatcttcaaatttctcaaccacgaggacagcaacaccttcagccttc 2536654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 41 - 158
Target Start/End: Complemental strand, 2486547 - 2486430
Alignment:
Q  41 cagcagcagaggaaaaccctaagaaaggaaaaagaacaaaaatggcaacagcaacagaagcaacacgttcaaatttaccagaggatttatgggaacacat 140  Q
    |||| |||| |||||||| ||||||| |||||||||||||||||||||||||||||||||||||| | ||  |||| |||||||| |||||||| |  ||    
T  2486547 cagccgcagcggaaaaccataagaaacgaaaaagaacaaaaatggcaacagcaacagaagcaacatgctcgtatttcccagaggaattatgggagcgaat 2486448  T
Q  141 cttcaaattcctcaacga 158  Q
    ||| ||||||||||||||    
T  2486447 ctttaaattcctcaacga 2486430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 101 - 180
Target Start/End: Complemental strand, 2491320 - 2491241
Alignment:
Q  101 caacacgttcaaatttaccagaggatttatgggaacacatcttcaaattcctcaacgacgaggaaaacaacaccttcaac 180  Q
    |||||||||||  |||||||||| | ||||||||||||||| |||||||||| ||||||||||| ||||||| |||||||    
T  2491320 caacacgttcatgtttaccagagaagttatgggaacacatcctcaaattcctgaacgacgaggacaacaacatcttcaac 2491241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 107 - 159
Target Start/End: Original strand, 2625296 - 2625348
Alignment:
Q  107 gttcaaatttaccagaggatttatgggaacacatcttcaaattcctcaacgac 159  Q
    ||||| ||||||||||||| |||||||||||||||||||||||||||||||||    
T  2625296 gttcagatttaccagaggagttatgggaacacatcttcaaattcctcaacgac 2625348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 53 - 163
Target Start/End: Complemental strand, 2519473 - 2519366
Alignment:
Q  53 aaaaccctaagaaaggaaaaagaacaaaaatggcaacagcaacagaagcaacacgttcaaatttaccagaggatttatgggaacacatcttcaaattcct 152  Q
    ||||||||||||||  ||||||||||||||||||| ||||| ||    || || ||||| ||||||| ||||| |||||||| | |||  |||| |||||    
T  2519473 aaaaccctaagaaaccaaaaagaacaaaaatggcagcagcagcaa---catcatgttcatatttaccggaggagttatgggagcgcattgtcaagttcct 2519377  T
Q  153 caacgacgagg 163  Q
    |||||||||||    
T  2519376 caacgacgagg 2519366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 100 - 159
Target Start/End: Complemental strand, 2467738 - 2467679
Alignment:
Q  100 gcaacacgttcaaatttaccagaggatttatgggaacacatcttcaaattcctcaacgac 159  Q
    |||||| ||||| |||||||| |||| |||||||| | ||||||||||||||||||||||    
T  2467738 gcaacatgttcatatttaccaaaggagttatgggagcgcatcttcaaattcctcaacgac 2467679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 100 - 161
Target Start/End: Original strand, 5101944 - 5102005
Alignment:
Q  100 gcaacacgttcaaatttaccagaggatttatgggaacacatcttcaaattcctcaacgacga 161  Q
    |||||| ||||| ||||||| || || |||||||| | ||||||||||||||||||||||||    
T  5101944 gcaacaggttcatatttaccggatgagttatgggagcgcatcttcaaattcctcaacgacga 5102005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 113 - 155
Target Start/End: Complemental strand, 2547655 - 2547613
Alignment:
Q  113 atttaccagaggatttatgggaacacatcttcaaattcctcaa 155  Q
    |||||||||| || |||||||| ||||||||||||||||||||    
T  2547655 atttaccagatgagttatgggagcacatcttcaaattcctcaa 2547613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 107 - 152
Target Start/End: Original strand, 2380052 - 2380097
Alignment:
Q  107 gttcaaatttaccagaggatttatgggaacacatcttcaaattcct 152  Q
    |||||||||||||||| || ||||||||| ||||| ||||||||||    
T  2380052 gttcaaatttaccagatgagttatgggaatacatcatcaaattcct 2380097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 280 - 317
Target Start/End: Complemental strand, 2491195 - 2491158
Alignment:
Q  280 agtttcaggtctctctccctcgtttcaaaacagtttct 317  Q
    ||||||||||||||||| ||||| ||||||||||||||    
T  2491195 agtttcaggtctctctcactcgtctcaaaacagtttct 2491158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 281 - 317
Target Start/End: Complemental strand, 2486373 - 2486337
Alignment:
Q  281 gtttcaggtctctctccctcgtttcaaaacagtttct 317  Q
    |||| ||||||||||||||||| ||||||||||||||    
T  2486373 gttttaggtctctctccctcgtctcaaaacagtttct 2486337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 285 - 317
Target Start/End: Complemental strand, 2536647 - 2536615
Alignment:
Q  285 caggtctctctccctcgtttcaaaacagtttct 317  Q
    |||||||||||||||| ||||||||||||||||    
T  2536647 caggtctctctccctcatttcaaaacagtttct 2536615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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