View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16554_low_76 (Length: 320)
Name: NF16554_low_76
Description: NF16554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16554_low_76 |
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Alignment Details
Target: chr8 (Bit Score: 249; Significance: 1e-138; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 18 - 311
Target Start/End: Complemental strand, 27079858 - 27079565
Alignment:
| Q |
18 |
taaaggtgctgatgcggatcataaggtaacattcaaaggttatggtgttaataacacgtttaaggattacgataaaaaaggtatttcttttgccggttat |
117 |
Q |
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| T |
27079858 |
taaaggtgctgatgcggatcataagataacattcaaaggttatggtgttaataacacgtttaaggattacgataaaaaaggtatttcttttgctggttat |
27079759 |
T |
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| Q |
118 |
actaagaaatcttcttcttcaacaaattctgttagtgaaagtgttagtttggcnnnnnnntgggttcaacctggtaagtttttccgggaaaagatgttga |
217 |
Q |
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| T |
27079758 |
actaagaaatcttcttcttcaacaaattctgttagtgaaagtgttagtttggcaaaaaaatgggttcaacctggtaagtttttccgagaaaagatgttga |
27079659 |
T |
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| Q |
218 |
aacaaggggtggttatgcctatgccggatattaaggataaattaccacaaagatcgtttttaccacgtaccattttgaccaaattaccctttgc |
311 |
Q |
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| T |
27079658 |
aacaaggggtggttatgcctatgccggatattaaggataaattaccgccaaggtcgtttttaccacgtaccattttgaccaaattaccctttgc |
27079565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 66 - 311
Target Start/End: Complemental strand, 27066090 - 27065848
Alignment:
| Q |
66 |
taataacacgtttaaggattacgataaaaaaggtatttcttttgccggttatactaagaaatcttcttcttcaacaaattctgttagtgaaagtgttagt |
165 |
Q |
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| T |
27066090 |
taataatacatttaaggattatgacaagaaaggtatttcttttgctagttataataaaa---ctactacttcaactaactctctcagtgatagtggtagt |
27065994 |
T |
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| Q |
166 |
ttggcnnnnnnntgggttcaacctggtaagtttttccgggaaaagatgttgaaacaaggggtggttatgcctatgccggatattaaggataaattaccac |
265 |
Q |
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| T |
27065993 |
ttggcaaaaaacatggttcaacctggtaagtttttccgggagaagatgttgaaggaagggacagttatgcctatgccagatataagggataaattaccgc |
27065894 |
T |
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| Q |
266 |
aaagatcgtttttaccacgtaccattttgaccaaattaccctttgc |
311 |
Q |
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| T |
27065893 |
caaggtcgtttttgcctcgttccattttgaccaaattgccatttgc |
27065848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 180 - 311
Target Start/End: Complemental strand, 27053537 - 27053406
Alignment:
| Q |
180 |
ggttcaacctggtaagtttttccgggaaaagatgttgaaacaaggggtggttatgcctatgccggatattaaggataaattaccacaaagatcgttttta |
279 |
Q |
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|||| |||| |||||||||||||| |||| ||||||||| ||||| |||||||||||||| |||| | |||||| ||||||| || |||||||| |
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| T |
27053537 |
ggttgaaccaggtaagtttttccgcgaaaggatgttgaaggaagggactgttatgcctatgccagatacaagggataagttaccacctaggtcgtttttg |
27053438 |
T |
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| Q |
280 |
ccacgtaccattttgaccaaattaccctttgc |
311 |
Q |
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| T |
27053437 |
ccacgttccattttgatcaaattgccctttgc |
27053406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 178 - 281
Target Start/End: Original strand, 14866057 - 14866160
Alignment:
| Q |
178 |
tgggttcaacctggtaagtttttccgggaaaagatgttgaaacaaggggtggttatgcctatgccggatattaaggataaattaccacaaagatcgtttt |
277 |
Q |
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|||||| | |||||||||||||| | || || ||||||||| |||| ||| ||||||||||| ||||||| ||||||||||| |||| ||||||| |
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| T |
14866057 |
tgggttgagcctggtaagttttttagagagaaaatgttgaaagaaggtacggtaatgcctatgcctgatattagagataaattacctaaaaggtcgtttt |
14866156 |
T |
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| Q |
278 |
tacc |
281 |
Q |
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|||| |
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| T |
14866157 |
tacc |
14866160 |
T |
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