View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16554_low_80 (Length: 311)
Name: NF16554_low_80
Description: NF16554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16554_low_80 |
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Alignment Details
Target: chr5 (Bit Score: 125; Significance: 2e-64; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 24 - 152
Target Start/End: Complemental strand, 43383429 - 43383301
Alignment:
| Q |
24 |
cttctgaaattaggaggagggttaatgcctctccattcacgctcaggatgacaacgcatatgaccaaaaagagccttccatgaccagaatatcttaccac |
123 |
Q |
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| T |
43383429 |
cttctgaaattaggtggagggttaatgcctctccattcacgctcaggatgacaacgcatatgaccaaaaagagccttccatgaccagaatatcttaccac |
43383330 |
T |
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| Q |
124 |
attcagtgcaagtacgagcaatgttgttc |
152 |
Q |
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| T |
43383329 |
attcagtgcaagtacgagcaatgttgttc |
43383301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 24 - 151
Target Start/End: Complemental strand, 25870150 - 25870023
Alignment:
| Q |
24 |
cttctgaaattaggaggagggttaatgcctctccattcacgctcaggatgacaacgcatatgaccaaaaagagccttccatgaccagaatatcttaccac |
123 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25870150 |
cttctgaaattaggaggagggttaatgcctctccattgacgctcaggatgacaacgcatatgaccaaaaagagccttccatgaccagaatatcttaccac |
25870051 |
T |
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| Q |
124 |
attcagtgcaagtacgagcaatgttgtt |
151 |
Q |
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| T |
25870050 |
attcagtgcaagtacgagcaatgttgtt |
25870023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 180 - 298
Target Start/End: Complemental strand, 43383282 - 43383170
Alignment:
| Q |
180 |
tccccacccaattccttacgcttcttcttaccagtaacattaacagaatcatctttcatcctgtattgatcaccactactatgatcatcggaccaatttt |
279 |
Q |
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| T |
43383282 |
tccccacccaattccttactcttcttcttaccagtaacagta------tcatctttcatcctgtattgatcaccactactatgatcatcggaccaatttt |
43383189 |
T |
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| Q |
280 |
tatctccacctttcatctc |
298 |
Q |
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| T |
43383188 |
tatctccacctttcatctc |
43383170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 261 - 298
Target Start/End: Complemental strand, 25869970 - 25869933
Alignment:
| Q |
261 |
tgatcatcggaccaatttttatctccacctttcatctc |
298 |
Q |
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| T |
25869970 |
tgatcatcggaccaatttttatctccacctttcatctc |
25869933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 180 - 208
Target Start/End: Complemental strand, 25870009 - 25869981
Alignment:
| Q |
180 |
tccccacccaattccttacgcttcttctt |
208 |
Q |
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| T |
25870009 |
tccccacccaattccttacgcttcttctt |
25869981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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