View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16554_low_85 (Length: 296)
Name: NF16554_low_85
Description: NF16554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16554_low_85 |
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Alignment Details
Target: chr2 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 21 - 280
Target Start/End: Original strand, 2932917 - 2933176
Alignment:
| Q |
21 |
atttctctctttcctttgtggtgtttaagatccttttcatgtttcctccattcttgtgtatcgtcttcttttcctttgttccatccatatgctgccacaa |
120 |
Q |
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| T |
2932917 |
atttctctctttcctttgtggtgtttaagatccttttcatgtttcctccattcttgtgtatcgtcttcttttcctttgttccatccatacgctgtcacaa |
2933016 |
T |
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| Q |
121 |
ccttaacctttcctacatacgaggtggtttggttttacttcagaggaggttcactgctcagttatcatccaccatccccaccctcgagacaaacacttta |
220 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
2933017 |
ccttaacctttcctacatacgaggtggtttggttttacttcagaggaggttcactgttcagttatcatccaccatccctaccctcgagacaaacacttta |
2933116 |
T |
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| Q |
221 |
cccaccatcccttcccactcaaccgattgatcattgattcactcttttctttcaacaaat |
280 |
Q |
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| T |
2933117 |
cccaccatcccttcccactcaaccggttgatcattgattcactcttttctttcgacaaat |
2933176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 175 - 264
Target Start/End: Original strand, 6997561 - 6997649
Alignment:
| Q |
175 |
tgctcagttatcatccaccatccccaccctcgagacaaacactttacccaccatcccttcccactcaaccgattgatcattgattcactc |
264 |
Q |
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| T |
6997561 |
tgctcagttatcaaccaccatccctacccttggcacaaacacttta-ccaccgtcccttcccatttaatcggttgatcattgattcactc |
6997649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 33 - 118
Target Start/End: Original strand, 17623941 - 17624025
Alignment:
| Q |
33 |
cctttgtggtgtttaagatccttttcatgtttcctccattcttgtgtatcgtcttcttttcctttgttccatccatatgctgccac |
118 |
Q |
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|||||||||||||| | |||| |||| |||||||||| | | |||| ||||||||||| ||||||| ||||||||| ||| ||||| |
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| T |
17623941 |
cctttgtggtgtttgatatccctttcttgtttcctccct-catgtgcatcgtcttcttctcctttgatccatccatttgccgccac |
17624025 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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