View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16554_low_87 (Length: 291)

Name: NF16554_low_87
Description: NF16554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16554_low_87
NF16554_low_87
[»] chr8 (3 HSPs)
chr8 (1-274)||(1790387-1790660)
chr8 (66-274)||(14389155-14389363)
chr8 (67-271)||(3495583-3495787)


Alignment Details
Target: chr8 (Bit Score: 274; Significance: 1e-153; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 1 - 274
Target Start/End: Complemental strand, 1790660 - 1790387
Alignment:
Q  1 catcagaaatctatctactaaatacattacaatacacgcaaaagaaaagagccattatcaatggtaatttacattttgcatcagctccatcttttggacg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1790660 catcagaaatctatctactaaatacattacaatacacgcaaaagaaaagagccattatcaatggtaatttacattttgcatcagctccatcttttggacg 1790561  T
Q  101 tttgtatccttcaccttccttcataatctttttgagaaccatcttgtcctcagttacttcaataacggtcttccaagaaattaactcaagttttatctct 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1790560 tttgtatccttcaccttccttcataatctttttgagaaccatcttgtcctcagttacttcaataacggtcttccaagaaattaactcaagttttatctct 1790461  T
Q  201 aatattgcattagttggtactgcacttttatcaccatcagctggcttgccggtctcaccgaatccatctattac 274  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1790460 aatattgcattagttggtactgcacttttatcaccatcagctggcttgccggtctcaccgaatccatctattac 1790387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 66 - 274
Target Start/End: Original strand, 14389155 - 14389363
Alignment:
Q  66 aatttacattttgcatcagctccatcttttggacgtttgtatccttcaccttccttcataatctttttgagaaccatcttgtcctcagttacttcaataa 165  Q
    |||||||||||| || ||||||||||||||||||  ||||||||||| |||||||| | ||||||||||| |||| ||||||| || |||||||||| ||    
T  14389155 aatttacattttacagcagctccatcttttggacacttgtatccttcgccttccttgagaatctttttgataaccttcttgtcatcggttacttcaaaaa 14389254  T
Q  166 cggtcttccaagaaattaactcaagttttatctctaatattgcattagttggtactgcacttttatcaccatcagctggcttgccggtctcaccgaatcc 265  Q
    | |||||||||||||  |||||||| || ||||  ||| ||||||||| ||| |||||| ||| |||||||| |||||| |||||  || |||| |||||    
T  14389255 cagtcttccaagaaaccaactcaaggttaatcttcaatgttgcattaggtggaactgcaatttcatcaccatgagctggtttgcccttcacaccaaatcc 14389354  T
Q  266 atctattac 274  Q
    |||||||||    
T  14389355 atctattac 14389363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 67 - 271
Target Start/End: Original strand, 3495583 - 3495787
Alignment:
Q  67 atttacattttgcatcagctccatcttttggacgtttgtatccttcaccttccttcataatctttttgagaaccatcttgtcctcagttacttcaataac 166  Q
    ||||||||||| || |||||||||| |||||||| |  |||||||| |||||||| | ||||||||||| |||| ||||||| |||||||||||   |||    
T  3495583 atttacattttacaacagctccatcatttggacgctcatatccttctccttccttgacaatctttttgataaccttcttgtcatcagttacttcggaaac 3495682  T
Q  167 ggtcttccaagaaattaactcaagttttatctctaatattgcattagttggtactgcacttttatcaccatcagctggcttgccggtctcaccgaatcca 266  Q
     ||||||||||||| |||||||||  | ||||| ||| ||||||||| ||| ||||||| || |||||||| |||||| |||||  ||||| | ||||||    
T  3495683 agtcttccaagaaactaactcaagggtaatctccaatgttgcattaggtggaactgcaccttcatcaccatgagctggtttgcctttctcatcaaatcca 3495782  T
Q  267 tctat 271  Q
    |||||    
T  3495783 tctat 3495787  T

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