View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16554_low_88 (Length: 285)
Name: NF16554_low_88
Description: NF16554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16554_low_88 |
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Alignment Details
Target: chr1 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 17 - 273
Target Start/End: Original strand, 36966164 - 36966411
Alignment:
| Q |
17 |
atatgttgtttgagtttaccatcaccaaccatattttgtagtgatctaagtaaattggtgatatggagaatcatgttgtgtgtgtttttgagcttgtgtc |
116 |
Q |
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| T |
36966164 |
atatgttgtttgagtttaccatcaccaaccatattttgtagtgatctaagtaaattggtgatatggagaatcatgttgtgtgtgtttttgagcttgtgtc |
36966263 |
T |
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| Q |
117 |
actgaaaaatgtttcccattgtgtaatcagcggtttctagtatattaaagtgaaatgagtannnnnnnnnnngtttgatatatatagatgttatggaatt |
216 |
Q |
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| T |
36966264 |
actgaaaaatgtttcccattgtgtaatcagcggtttctagtatattaaagtgaaatgagta---ttttttttgtttgatat------atgttatggaatt |
36966354 |
T |
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| Q |
217 |
caattctcgtgcatgataaatgtagagatcttattatttcggcaagaataacatttt |
273 |
Q |
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| T |
36966355 |
caattctagtgcatgataaatgcagagatcttattatttcggcaagaataacatttt |
36966411 |
T |
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