View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16554_low_89 (Length: 283)
Name: NF16554_low_89
Description: NF16554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16554_low_89 |
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Alignment Details
Target: chr6 (Bit Score: 248; Significance: 1e-138; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 1 - 267
Target Start/End: Original strand, 1971454 - 1971723
Alignment:
| Q |
1 |
aagatggtaagatagacaaactcgaaaacaagtccaacaccattgatggtgacgaccaaaaggctgtttgggtgcacaaaaggcattccataaaacaccc |
100 |
Q |
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| T |
1971454 |
aagatggtaagatagacaaacttgaaaacaagtccaacaccattgatggtgacgaccaaaaggctgtttgggtgcacaaaaggcattccataaaacaccc |
1971553 |
T |
|
| Q |
101 |
aaaatgcacaattcagcagagttgctaagtatggatctggtttgaactcttccacagacttcttcttgataattcaatagaaagttggattgcaattcat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1971554 |
aaaatgcacaattcagcagagttgctaagtatggatctggtttgaattcttccacagacttcttcttgataattcaatagaaagttggattgcaattcat |
1971653 |
T |
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| Q |
201 |
tcaaataattcattagtaaccct---taatgttattcttagaataaattttgatcaaccttataacaaac |
267 |
Q |
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| T |
1971654 |
tcaaataattcattagtaacccttaataatgttattcttagaataaattttgatcaaccttataacaaac |
1971723 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 2 - 218
Target Start/End: Original strand, 1684975 - 1685191
Alignment:
| Q |
2 |
agatggtaagatagacaaactcgaaaacaagtccaacaccattgatggtgacgaccaaaaggctgtttgggtgcacaaaaggcattccataaaacaccca |
101 |
Q |
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| T |
1684975 |
agatggtaagatagacaatcatgaaaacaagtccaacaccattgatggtgacgaccaaaaggctgtttgggtgcacaaaaggcattccatagaataccca |
1685074 |
T |
|
| Q |
102 |
aaatgcacaattcagcagagttgctaagtatggatctggtttgaactcttccacagacttcttcttgataattcaatagaaagttggattgcaattcatt |
201 |
Q |
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| T |
1685075 |
aaatgcacaattcagcagagttgctaagtatggatgagacttgaactcctccacatccttcttctttataatggtatagaaagttgggctgcaattcatt |
1685174 |
T |
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| Q |
202 |
caaataattcattagta |
218 |
Q |
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||||||||||||||||| |
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| T |
1685175 |
caaataattcattagta |
1685191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 1 - 195
Target Start/End: Original strand, 1695301 - 1695495
Alignment:
| Q |
1 |
aagatggtaagatagacaaactcgaaaacaagtccaacaccattgatggtgacgaccaaaaggctgtttgggtgcacaaaaggcattccataaaacaccc |
100 |
Q |
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||||||||||||||||||| ||| ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| || |||| |
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| T |
1695301 |
aagatggtaagatagacaacctcaaaaacaagtccaacaccattgatagtgactaccaaaaggctgtttgggtgcacaaaaggcattccatagaataccc |
1695400 |
T |
|
| Q |
101 |
aaaatgcacaattcagcagagttgctaagtatggatctggtttgaactcttccacagacttcttcttgataattcaatagaaagttggattgcaa |
195 |
Q |
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| T |
1695401 |
aaaatgcacaattcaacaatgttgccaagtatggatcaggcttgaactcctccacatccttcttcttgataatcttatagaaagttggactgcaa |
1695495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 1 - 203
Target Start/End: Original strand, 1700746 - 1700948
Alignment:
| Q |
1 |
aagatggtaagatagacaaactcgaaaacaagtccaacaccattgatggtgacgaccaaaaggctgtttgggtgcacaaaaggcattccataaaacaccc |
100 |
Q |
| |
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||||||||||||||||||| ||| || | || |||||||| |||||| | || || ||| |||||||||||||||||||||||||||||||||||||| |
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| T |
1700746 |
aagatggtaagatagacaacctcaaagagaattccaacactattgatagagagaactaaagtgctgtttgggtgcacaaaaggcattccataaaacaccc |
1700845 |
T |
|
| Q |
101 |
aaaatgcacaattcagcagagttgctaagtatggatctggtttgaactcttccacagacttcttcttgataattcaatagaaagttggattgcaattcat |
200 |
Q |
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|||| |||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||| |||||| ||| |
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| T |
1700846 |
aaaaagcacaattcaacaatgttgctaagtatggatctggtttgaactcttccacagacttcttctttataattccatagaaagttggactgcaatacat |
1700945 |
T |
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| Q |
201 |
tca |
203 |
Q |
| |
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||| |
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| T |
1700946 |
tca |
1700948 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 51 - 156
Target Start/End: Original strand, 1675654 - 1675759
Alignment:
| Q |
51 |
gacgaccaaaaggctgtttgggtgcacaaaaggcattccataaaacacccaaaatgcacaattcagcagagttgctaagtatggatctggtttgaactct |
150 |
Q |
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||||||||||| |||| ||||||||||||||||| ||||| || ||||||||||||||||||| || | |||||| ||||| ||| | |||||||| |
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| T |
1675654 |
gacgaccaaaattctgtctgggtgcacaaaaggcaatccatggaatacccaaaatgcacaattcaacacaattgctatgtatgtatcagacttgaactcc |
1675753 |
T |
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| Q |
151 |
tccaca |
156 |
Q |
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|||||| |
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| T |
1675754 |
tccaca |
1675759 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 177 - 218
Target Start/End: Original strand, 1695682 - 1695723
Alignment:
| Q |
177 |
atagaaagttggattgcaattcattcaaataattcattagta |
218 |
Q |
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|||||||||||| |||||||||||||||||||||||||||| |
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| T |
1695682 |
atagaaagttgggctgcaattcattcaaataattcattagta |
1695723 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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