View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16554_low_9 (Length: 644)
Name: NF16554_low_9
Description: NF16554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16554_low_9 |
 | |
|
| [»] scaffold0103 (2 HSPs) |
| | |
|
Alignment Details
Target: scaffold0103 (Bit Score: 316; Significance: 1e-178; HSPs: 2)
Name: scaffold0103
Description:
Target: scaffold0103; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 11 - 330
Target Start/End: Complemental strand, 6309 - 5990
Alignment:
| Q |
11 |
caaaggtcattgtcactcaaatttcgcacgcagccatatttatgagtcctacacctcatggaatcagttcagtattccaaagaagttagcaaaaatctca |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
6309 |
caaaggtcattgtcactcaaatttcgcacgcagccatatttatgagtcctacacctcatggaatcagttcagtgttccaaagaagttagcaaaaatctca |
6210 |
T |
|
| Q |
111 |
ctggtttcaaaaagaaataacaaaatcatgattcaatagcaaacaaatataacacaaacagcaaccaggttcttaaaattacttggtgatcaagcaaatg |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6209 |
ctggtttcaaaaagaaataacaaaatcatgattcaatagcaaacaaatataacacaaacagcaaccaggttcttaaaattacttggtgatcaagcaaatg |
6110 |
T |
|
| Q |
211 |
atatccatggccatctttaacatcaattgatcacaaacactgattcaaatggcttataatctgtttatttgcaacttaatcacagcttattgcatttgtc |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6109 |
atatccatggccatctttaacatcaattgatcacaaacactgattcaaatggcttataatctgtttatttgcaacttaatcacagcttattgcatttgtc |
6010 |
T |
|
| Q |
311 |
tcaacattttgcaattgtct |
330 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
6009 |
tcaacattttgcaattgtct |
5990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0103; HSP #2
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 461 - 563
Target Start/End: Complemental strand, 5857 - 5755
Alignment:
| Q |
461 |
tatcaagaagtaattgccataaacaacatcaactccaagaatcacaaacccttatgcttgacaaccaagaaacctgcagaagaagatgagaaacataatc |
560 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
5857 |
tatcaagaagtaattgccataaacaacatcaactccaagaatcacaaacccttatgcttgacaaccaagaaacctgcagaagaagttgagaaacataatc |
5758 |
T |
|
| Q |
561 |
agt |
563 |
Q |
| |
|
||| |
|
|
| T |
5757 |
agt |
5755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 316; Significance: 1e-178; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 11 - 330
Target Start/End: Original strand, 2633700 - 2634019
Alignment:
| Q |
11 |
caaaggtcattgtcactcaaatttcgcacgcagccatatttatgagtcctacacctcatggaatcagttcagtattccaaagaagttagcaaaaatctca |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
2633700 |
caaaggtcattgtcactcaaatttcgcacgcagccatatttatgagtcctacacctcatggaatcagttcagtgttccaaagaagttagcaaaaatctca |
2633799 |
T |
|
| Q |
111 |
ctggtttcaaaaagaaataacaaaatcatgattcaatagcaaacaaatataacacaaacagcaaccaggttcttaaaattacttggtgatcaagcaaatg |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2633800 |
ctggtttcaaaaagaaataacaaaatcatgattcaatagcaaacaaatataacacaaacagcaaccaggttcttaaaattacttggtgatcaagcaaatg |
2633899 |
T |
|
| Q |
211 |
atatccatggccatctttaacatcaattgatcacaaacactgattcaaatggcttataatctgtttatttgcaacttaatcacagcttattgcatttgtc |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2633900 |
atatccatggccatctttaacatcaattgatcacaaacactgattcaaatggcttataatctgtttatttgcaacttaatcacagcttattgcatttgtc |
2633999 |
T |
|
| Q |
311 |
tcaacattttgcaattgtct |
330 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
2634000 |
tcaacattttgcaattgtct |
2634019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 11 - 205
Target Start/End: Original strand, 12082835 - 12083029
Alignment:
| Q |
11 |
caaaggtcattgtcactcaaatttcgcacgcagccatatttatgagtcctacacctcatggaatcagttcagtattccaaagaagttagcaaaaatctca |
110 |
Q |
| |
|
||||||| ||| ||| ||||||||| |||| ||||||||||||||||||| ||||| ||| |||||||||| |||||||||||||||||||||||||| | |
|
|
| T |
12082835 |
caaaggttattatcattcaaatttcacacgtagccatatttatgagtcctgcacctaatgaaatcagttcaatattccaaagaagttagcaaaaatctaa |
12082934 |
T |
|
| Q |
111 |
ctggtttcaaaaagaaataacaaaatcatgattcaatagcaaacaaatataacacaaacagcaaccaggttcttaaaattacttggtgatcaagc |
205 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||| ||||||||| |
|
|
| T |
12082935 |
ctggtttcaaaaggaaataacaaaatcatgattcaatagcaaacaaaaataacacaaacagcaaccaaattcttaaaattacttaatgatcaagc |
12083029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 198 - 330
Target Start/End: Original strand, 12083707 - 12083839
Alignment:
| Q |
198 |
gatcaagcaaatgatatccatggccatctttaacatcaattgatcacaaacactgattcaaatggcttataatctgtttatttgcaacttaatcacagct |
297 |
Q |
| |
|
|||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
12083707 |
gatcaagcaaatgatatctatggtcatctttaacatcaattgatcacaaacactgattcaaatggcttataatttgtttatttgcaacttaatcacagct |
12083806 |
T |
|
| Q |
298 |
tattgcatttgtctcaacattttgcaattgtct |
330 |
Q |
| |
|
|||| | ||||||||||||| |||||||||||| |
|
|
| T |
12083807 |
tattacttttgtctcaacatcttgcaattgtct |
12083839 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 461 - 563
Target Start/End: Original strand, 2634152 - 2634254
Alignment:
| Q |
461 |
tatcaagaagtaattgccataaacaacatcaactccaagaatcacaaacccttatgcttgacaaccaagaaacctgcagaagaagatgagaaacataatc |
560 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2634152 |
tatcaagaagtaattgccataaacaacatcaactccaagaatcacaaacccttatgcttgacaaccaagaaacctgcagaagaagatgagaaacataatc |
2634251 |
T |
|
| Q |
561 |
agt |
563 |
Q |
| |
|
||| |
|
|
| T |
2634252 |
agt |
2634254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 94 - 227
Target Start/End: Complemental strand, 871919 - 871786
Alignment:
| Q |
94 |
agttagcaaaaatctcactggtttcaaaaagaaataacaaaatcatgattcaatagcaaacaaatataacacaaacagcaaccaggttcttaaaattact |
193 |
Q |
| |
|
|||||| || |||||||||||||||||||||||| |||||||||||| | |||| |||| ||| ||||||||||||||||||| | ||||||||||| |
|
|
| T |
871919 |
agttagtaataatctcactggtttcaaaaagaaacaacaaaatcatgttccaatgacaaagaaaaataacacaaacagcaaccaaagttttaaaattact |
871820 |
T |
|
| Q |
194 |
tggtgatcaagcaaatgatatccatggccatctt |
227 |
Q |
| |
|
||||| |||||||| || ||||||| ||||||| |
|
|
| T |
871819 |
tggtgttcaagcaactgctatccataaccatctt |
871786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 312; Significance: 1e-175; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 312; E-Value: 1e-175
Query Start/End: Original strand, 11 - 330
Target Start/End: Complemental strand, 12808884 - 12808565
Alignment:
| Q |
11 |
caaaggtcattgtcactcaaatttcgcacgcagccatatttatgagtcctacacctcatggaatcagttcagtattccaaagaagttagcaaaaatctca |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12808884 |
caaaggtcattgtcactcaaatttcgcacgcaaccatatttatgagtcctacacctcatggaatcagttcagtattccaaagaagttagcaaaaatctca |
12808785 |
T |
|
| Q |
111 |
ctggtttcaaaaagaaataacaaaatcatgattcaatagcaaacaaatataacacaaacagcaaccaggttcttaaaattacttggtgatcaagcaaatg |
210 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12808784 |
ctggtttaaaaaagaaataacaaaatcatgattcaatagcaaacaaatataacacaaacagcaaccaggttcttaaaattacttggtgatcaagcaaatg |
12808685 |
T |
|
| Q |
211 |
atatccatggccatctttaacatcaattgatcacaaacactgattcaaatggcttataatctgtttatttgcaacttaatcacagcttattgcatttgtc |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12808684 |
atatccatggccatctttaacatcaattgatcacaaacactgattcaaatggcttataatctgtttatttgcaacttaatcacagcttattgcatttgtc |
12808585 |
T |
|
| Q |
311 |
tcaacattttgcaattgtct |
330 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
12808584 |
tcaacattttgcaattgtct |
12808565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 11 - 330
Target Start/End: Original strand, 37433123 - 37433442
Alignment:
| Q |
11 |
caaaggtcattgtcactcaaatttcgcacgcagccatatttatgagtcctacacctcatggaatcagttcagtattccaaagaagttagcaaaaatctca |
110 |
Q |
| |
|
||||||| ||||||| ||||||||| |||| || ||||||||||| |||||||||| ||| |||||||||| |||||||||||||||||||||||||| | |
|
|
| T |
37433123 |
caaaggttattgtcattcaaatttcacacgtagacatatttatgattcctacacctaatgaaatcagttcaatattccaaagaagttagcaaaaatctaa |
37433222 |
T |
|
| Q |
111 |
ctggtttcaaaaagaaataacaaaatcatgattcaatagcaaacaaatataacacaaacagcaaccaggttcttaaaattacttggtgatcaagcaaatg |
210 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||| |||||||| ||| |||||| |||||||| || ||| |||||||||||||| |
|
|
| T |
37433223 |
ctggtttcaaaaggaaataacaaaatcatgattcaatagcaaacaaaaataacacagacaacaaccaaattcttaaagttccttaatgatcaagcaaatg |
37433322 |
T |
|
| Q |
211 |
atatccatggccatctttaacatcaattgatcacaaacactgattcaaatggcttataatctgtttatttgcaacttaatcacagcttattgcatttgtc |
310 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||| | |||||| |
|
|
| T |
37433323 |
atatccatggtcatctttaacatcaattgatcacaaacactgattcaaatggcttataatccgtttatttgcaacttaatcacaacttattacttttgtc |
37433422 |
T |
|
| Q |
311 |
tcaacattttgcaattgtct |
330 |
Q |
| |
|
||||||| |||||||||||| |
|
|
| T |
37433423 |
tcaacatcttgcaattgtct |
37433442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 461 - 563
Target Start/End: Complemental strand, 12808432 - 12808330
Alignment:
| Q |
461 |
tatcaagaagtaattgccataaacaacatcaactccaagaatcacaaacccttatgcttgacaaccaagaaacctgcagaagaagatgagaaacataatc |
560 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12808432 |
tatcaagaagtaattgccataaacaacatcaactccaagaatcacaaacccttatgcttgacaaccaagaaacctgcagaagaagatgagaaacataatc |
12808333 |
T |
|
| Q |
561 |
agt |
563 |
Q |
| |
|
||| |
|
|
| T |
12808332 |
agt |
12808330 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 94 - 227
Target Start/End: Original strand, 276290 - 276423
Alignment:
| Q |
94 |
agttagcaaaaatctcactggtttcaaaaagaaataacaaaatcatgattcaatagcaaacaaatataacacaaacagcaaccaggttcttaaaattact |
193 |
Q |
| |
|
|||||| || |||||||||||||||||||||||| |||||||||||| | |||| |||| ||| ||||||||||||||||||| | ||||||||||| |
|
|
| T |
276290 |
agttagtaataatctcactggtttcaaaaagaaacaacaaaatcatgttccaatgacaaagaaaaataacacaaacagcaaccaaagttttaaaattact |
276389 |
T |
|
| Q |
194 |
tggtgatcaagcaaatgatatccatggccatctt |
227 |
Q |
| |
|
||||| |||||||| || ||||||| ||||||| |
|
|
| T |
276390 |
tggtgttcaagcaactgctatccataaccatctt |
276423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 216; Significance: 1e-118; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 11 - 330
Target Start/End: Complemental strand, 21838411 - 21838094
Alignment:
| Q |
11 |
caaaggtcattgtcactcaaatttcgcacgcagccatatttatgagtcctacacctcatggaatcagttcagtattccaaagaagttagcaaaaatctca |
110 |
Q |
| |
|
||||||| ||||||| |||||||| |||| ||||||||||||||||||||||||| ||| |||||||||| |||||||||||||||||||||||||| | |
|
|
| T |
21838411 |
caaaggttattgtcattcaaatttaacacgtagccatatttatgagtcctacacctaatgaaatcagttcaatattccaaagaagttagcaaaaatctaa |
21838312 |
T |
|
| Q |
111 |
ctggtttcaaaaagaaataacaaaatcatgattcaatagcaaacaaatataacacaaacagcaaccaggttcttaaaattacttggtgatcaagcaaatg |
210 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| ||||||||||| | |||||||||||| |
|
|
| T |
21838311 |
ctggtttcaaaaggaaataacaaaatcatgattcaatagcaaacaaaaataacacaaacagcaaccaaattc-taaaattactt-atcatcaagcaaatg |
21838214 |
T |
|
| Q |
211 |
atatccatggccatctttaacatcaattgatcacaaacactgattcaaatggcttataatctgtttatttgcaacttaatcacagcttattgcatttgtc |
310 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||| | ||||| |
|
|
| T |
21838213 |
atatccatggtcatctttaacatcaattgatcacaaacactgattcaaatgacttataatccgtttatttgcaacttaatcacagcttattacttttgtg |
21838114 |
T |
|
| Q |
311 |
tcaacattttgcaattgtct |
330 |
Q |
| |
|
||||||| |||||||||||| |
|
|
| T |
21838113 |
tcaacatattgcaattgtct |
21838094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 148; E-Value: 9e-78
Query Start/End: Original strand, 111 - 330
Target Start/End: Original strand, 4806909 - 4807127
Alignment:
| Q |
111 |
ctggtttcaaaaagaaataacaaaatcatgattcaatagcaaacaaatataacacaaacagcaaccaggttcttaaaattacttggtgatcaagcaaatg |
210 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||| |||||| |||| |||||||||| | |||||||||||| |
|
|
| T |
4806909 |
ctggtttcaaaaggaaataacaaaatcatgattcaatagcaaacaaaaataacacaaacaacaaccaaattct-aaaattacttaatcatcaagcaaatg |
4807007 |
T |
|
| Q |
211 |
atatccatggccatctttaacatcaattgatcacaaacactgattcaaatggcttataatctgtttatttgcaacttaatcacagcttattgcatttgtc |
310 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||| |||||| | ||||| |
|
|
| T |
4807008 |
atatccatggtcatctttaacatcaattgatcacaaacactgattcaaatggcttataatccgtttatttgcaacttgatcacaacttattacttttgtg |
4807107 |
T |
|
| Q |
311 |
tcaacattttgcaattgtct |
330 |
Q |
| |
|
||||||| |||||||||||| |
|
|
| T |
4807108 |
tcaacatattgcaattgtct |
4807127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 182; Significance: 5e-98; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 182; E-Value: 5e-98
Query Start/End: Original strand, 11 - 328
Target Start/End: Original strand, 27261036 - 27261353
Alignment:
| Q |
11 |
caaaggtcattgtcactcaaatttcgcacgcagccatatttatgagtcctacacctcatggaatcagttcagtattccaaagaagttagcaaaaatctca |
110 |
Q |
| |
|
||||||| ||||||| | |||||| || | |||| ||| | ||||||||||| || ||| ||| |||||| ||||||||||||||| |||||||||| | |
|
|
| T |
27261036 |
caaaggttattgtcattaaaatttaacatgtagccgtatctttgagtcctacaactaatgaaataagttcaatattccaaagaagttggcaaaaatctaa |
27261135 |
T |
|
| Q |
111 |
ctggtttcaaaaagaaataacaaaatcatgattcaatagcaaacaaatataacacaaacagcaaccaggttcttaaaattacttggtgatcaagcaaatg |
210 |
Q |
| |
|
||| |||||||| |||||||||||||||||||||||||||||||||| ||||||||||||| ||||| ||||||||||||||| |||||||||||||| |
|
|
| T |
27261136 |
ctgatttcaaaaggaaataacaaaatcatgattcaatagcaaacaaaaataacacaaacaggaaccaaattcttaaaattacttaatgatcaagcaaatg |
27261235 |
T |
|
| Q |
211 |
atatccatggccatctttaacatcaattgatcacaaacactgattcaaatggcttataatctgtttatttgcaacttaatcacagcttattgcatttgtc |
310 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| ||||||||||| | ||||| |
|
|
| T |
27261236 |
atatccatggtcatctttaacatcaattgatcacaaacactaattcaaatggcttataatccgtttatttgcaacttaaccacagcttattacttttgtg |
27261335 |
T |
|
| Q |
311 |
tcaacattttgcaattgt |
328 |
Q |
| |
|
| ||||| |||||||||| |
|
|
| T |
27261336 |
taaacatcttgcaattgt |
27261353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 178; E-Value: 1e-95
Query Start/End: Original strand, 11 - 292
Target Start/End: Original strand, 32447222 - 32447503
Alignment:
| Q |
11 |
caaaggtcattgtcactcaaatttcgcacgcagccatatttatgagtcctacacctcatggaatcagttcagtattccaaagaagttagcaaaaatctca |
110 |
Q |
| |
|
||||||| ||||||| |||||||| || | |||| ||| | ||||||||||| || ||| |||||||||| |||| ||||||||||||||||||||| | |
|
|
| T |
32447222 |
caaaggttattgtcaatcaaatttaacatgtagccgtatctttgagtcctacaactaatgaaatcagttcaatatttcaaagaagttagcaaaaatctaa |
32447321 |
T |
|
| Q |
111 |
ctggtttcaaaaagaaataacaaaatcatgattcaatagcaaacaaatataacacaaacagcaaccaggttcttaaaattacttggtgatcaagcaaatg |
210 |
Q |
| |
|
||| |||||||| |||||||||||||||||||||||||||||||||| ||||||||||||| ||||| ||||||||||||||| |||||||||||||| |
|
|
| T |
32447322 |
ctgatttcaaaaggaaataacaaaatcatgattcaatagcaaacaaaaataacacaaacaggaaccaaattcttaaaattacttaatgatcaagcaaatg |
32447421 |
T |
|
| Q |
211 |
atatccatggccatctttaacatcaattgatcacaaacactgattcaaatggcttataatctgtttatttgcaacttaatca |
292 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
32447422 |
atatccatggtcatctttaacatcaattgatcacaaacactaattcaaatggcttataatccgtttatttgcaacttaatca |
32447503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 108 - 282
Target Start/End: Original strand, 4637665 - 4637839
Alignment:
| Q |
108 |
tcactggtttcaaaaagaaataacaaaatcatgattcaatagcaaacaaatataacacaaacagcaaccaggttcttaaaattacttggtgatcaagcaa |
207 |
Q |
| |
|
|||||||||| ||||| ||||| ||||||||||||| ||||||||||||| ||||||||||||||||||| || |||||||| ||| |||||||| ||| |
|
|
| T |
4637665 |
tcactggtttaaaaaaaaaataccaaaatcatgattgaatagcaaacaaaaataacacaaacagcaaccaaatttttaaaatttcttagtgatcaaacaa |
4637764 |
T |
|
| Q |
208 |
atgatatccatggccatctttaacatcaattgatcacaaacactgattcaaatggcttataatctgtttatttgc |
282 |
Q |
| |
|
|||||||| |||||||||||||| |||||| || || |||| || |||||||| || | ||||| ||||||||| |
|
|
| T |
4637765 |
atgatatcaatggccatctttaagatcaatagaccagaaactctaattcaaatacctcaaaatctttttatttgc |
4637839 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 471 - 562
Target Start/End: Original strand, 4638118 - 4638209
Alignment:
| Q |
471 |
taattgccataaacaacatcaactccaagaatcacaaacccttatgcttgacaaccaagaaacctgcagaagaagatgagaaacataatcag |
562 |
Q |
| |
|
|||||| |||||||| || ||||||| ||||||||||| |||||||||||| |||||||||||||||||||||||| | ||||||| |||| |
|
|
| T |
4638118 |
taattgacataaacagcaccaactcccagaatcacaaaaccttatgcttgatgaccaagaaacctgcagaagaagataaaaaacatactcag |
4638209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 285 - 328
Target Start/End: Original strand, 4637951 - 4637994
Alignment:
| Q |
285 |
cttaatcacagcttattgcatttgtctcaacattttgcaattgt |
328 |
Q |
| |
|
|||||||||| |||||||| |||||||||| ||||||||||||| |
|
|
| T |
4637951 |
cttaatcacaacttattgcttttgtctcaagattttgcaattgt |
4637994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 51; Significance: 7e-20; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 94 - 227
Target Start/End: Original strand, 25127261 - 25127392
Alignment:
| Q |
94 |
agttagcaaaaatctcactggtttcaaaaagaaataacaaaatcatgattcaatagcaaacaaatataacacaaacagcaaccaggttcttaaaattact |
193 |
Q |
| |
|
|||||| || |||||||||||||||||||||||| |||||||||||| | |||| | | ||| ||||||||||||||||||| | ||||||||||| |
|
|
| T |
25127261 |
agttagtaataatctcactggtttcaaaaagaaacaacaaaatcatgttccaat--gacagaaaaataacacaaacagcaaccaaagttttaaaattact |
25127358 |
T |
|
| Q |
194 |
tggtgatcaagcaaatgatatccatggccatctt |
227 |
Q |
| |
|
||||| |||||||| || ||||||| ||||||| |
|
|
| T |
25127359 |
tggtgttcaagcaactgctatccataaccatctt |
25127392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 273 - 317
Target Start/End: Original strand, 27896807 - 27896851
Alignment:
| Q |
273 |
gtttatttgcaacttaatcacagcttattgcatttgtctcaacat |
317 |
Q |
| |
|
||||||||||||||||||||||||||||| | ||||||||||||| |
|
|
| T |
27896807 |
gtttatttgcaacttaatcacagcttattacttttgtctcaacat |
27896851 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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