View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16554_low_90 (Length: 282)
Name: NF16554_low_90
Description: NF16554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16554_low_90 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 7 - 282
Target Start/End: Original strand, 35950515 - 35950789
Alignment:
| Q |
7 |
aatctaaaaggtgtaaaaacacgctaaaagaccctccaacgcccaacaacatttcggataccacaatcaactctttaacgataccacaattttttgagat |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
35950515 |
aatctaaaaggtgtaaaaacacgctaaaagaccctccaacacccaacaacatttcggataccacaatcaactctttaacgataccacaattttttaagat |
35950614 |
T |
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| Q |
107 |
cgcaaaaaatacatgctcaacatgagtgtaaacaaaatctacatcaaagtacatgataaagatgtctccgaaggttccttctccggctaatatgcaacta |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35950615 |
cgcaaaaaatacatgctcaacatgagtgtaaacaaaatctacatcaaagtacatgataaagatgtctccgaaggttccttctccggctaatatgcaacta |
35950714 |
T |
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| Q |
207 |
tatgacgcactttccatttaataattcattgtgacgtatgcatgataacaagaccattcaatttcaacatctaagt |
282 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35950715 |
tatgacgcac-ttccatttaataattcattgtgacgtatgcatgataacaagaccattcaatttcaacatctaagt |
35950789 |
T |
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