View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16554_low_92 (Length: 277)

Name: NF16554_low_92
Description: NF16554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16554_low_92
NF16554_low_92
[»] chr4 (41 HSPs)
chr4 (15-190)||(11546742-11546917)
chr4 (15-144)||(49585049-49585178)
chr4 (15-147)||(50980645-50980777)
chr4 (15-144)||(1795869-1795998)
chr4 (145-240)||(11446112-11446207)
chr4 (15-136)||(48649573-48649694)
chr4 (15-135)||(44257626-44257746)
chr4 (13-140)||(16019529-16019656)
chr4 (32-143)||(193604-193715)
chr4 (25-144)||(36123348-36123466)
chr4 (32-147)||(55609049-55609164)
chr4 (15-116)||(31574855-31574956)
chr4 (32-140)||(15522426-15522534)
chr4 (43-138)||(19165325-19165421)
chr4 (43-146)||(47015088-47015191)
chr4 (26-138)||(50633631-50633744)
chr4 (15-101)||(37997308-37997394)
chr4 (25-145)||(31468875-31468995)
chr4 (24-140)||(34757800-34757916)
chr4 (24-140)||(34759074-34759190)
chr4 (25-129)||(46665097-46665201)
chr4 (15-102)||(39478489-39478578)
chr4 (222-259)||(11546675-11546712)
chr4 (25-138)||(32223996-32224108)
chr4 (26-90)||(10474054-10474118)
chr4 (15-90)||(1627500-1627575)
chr4 (32-86)||(48796478-48796532)
chr4 (13-91)||(50608565-50608643)
chr4 (33-103)||(50831684-50831754)
chr4 (35-88)||(29227186-29227239)
chr4 (25-101)||(12387596-12387672)
chr4 (15-91)||(46634154-46634230)
chr4 (15-102)||(10250445-10250532)
chr4 (43-90)||(39654906-39654953)
chr4 (21-103)||(12595559-12595641)
chr4 (25-144)||(20118846-20118967)
chr4 (15-92)||(38792831-38792906)
chr4 (17-91)||(42853633-42853707)
chr4 (13-91)||(50721685-50721763)
chr4 (15-88)||(5386427-5386500)
chr4 (10-102)||(53801689-53801779)
[»] chr5 (27 HSPs)
chr5 (15-145)||(22098310-22098440)
chr5 (15-140)||(884496-884621)
chr5 (13-140)||(16690552-16690679)
chr5 (33-136)||(14321850-14321953)
chr5 (15-138)||(40364623-40364746)
chr5 (15-145)||(38293244-38293375)
chr5 (15-140)||(38493679-38493805)
chr5 (32-93)||(41699525-41699586)
chr5 (43-143)||(32639126-32639226)
chr5 (15-145)||(40829469-40829599)
chr5 (25-145)||(6758676-6758797)
chr5 (13-145)||(9168054-9168183)
chr5 (13-102)||(7287119-7287208)
chr5 (35-102)||(41321329-41321396)
chr5 (32-102)||(13309954-13310024)
chr5 (13-90)||(2678025-2678102)
chr5 (13-138)||(4088496-4088621)
chr5 (35-88)||(17097745-17097798)
chr5 (15-91)||(5168237-5168313)
chr5 (24-88)||(22529034-22529098)
chr5 (64-115)||(29687181-29687232)
chr5 (15-90)||(33958201-33958276)
chr5 (15-105)||(19952054-19952144)
chr5 (33-91)||(27487959-27488017)
chr5 (32-73)||(2972395-2972436)
chr5 (43-103)||(21353226-21353286)
chr5 (34-102)||(28306062-28306130)
[»] chr1 (43 HSPs)
chr1 (13-144)||(30973605-30973736)
chr1 (15-144)||(12999710-12999839)
chr1 (15-138)||(33076174-33076297)
chr1 (15-140)||(34817936-34818061)
chr1 (25-141)||(49446684-49446804)
chr1 (25-143)||(49931618-49931736)
chr1 (15-140)||(29877352-29877477)
chr1 (15-144)||(30536046-30536171)
chr1 (15-140)||(30745041-30745166)
chr1 (15-140)||(30766492-30766617)
chr1 (26-140)||(29359809-29359923)
chr1 (15-140)||(52437549-52437674)
chr1 (25-140)||(30519516-30519631)
chr1 (24-138)||(26501180-26501294)
chr1 (15-136)||(49020301-49020420)
chr1 (48-141)||(32831058-32831151)
chr1 (25-102)||(50242375-50242452)
chr1 (26-102)||(23665655-23665731)
chr1 (15-102)||(740883-740972)
chr1 (46-149)||(1689475-1689578)
chr1 (33-144)||(11947868-11947979)
chr1 (15-102)||(27533414-27533501)
chr1 (61-103)||(46100965-46101007)
chr1 (13-91)||(49065305-49065383)
chr1 (35-104)||(4857985-4858053)
chr1 (13-102)||(5771174-5771263)
chr1 (15-92)||(17652683-17652760)
chr1 (35-104)||(40439768-40439836)
chr1 (32-104)||(23332341-23332412)
chr1 (15-102)||(36750414-36750499)
chr1 (32-91)||(15082991-15083050)
chr1 (25-88)||(17082686-17082749)
chr1 (11-102)||(48261190-48261281)
chr1 (15-102)||(50775086-50775173)
chr1 (32-103)||(51571275-51571346)
chr1 (13-91)||(25672394-25672472)
chr1 (48-90)||(44517903-44517945)
chr1 (15-88)||(7919005-7919078)
chr1 (26-91)||(50149011-50149076)
chr1 (32-92)||(8846045-8846105)
chr1 (58-90)||(28769163-28769195)
chr1 (15-102)||(29359693-29359778)
chr1 (15-83)||(31847132-31847200)
[»] scaffold0053 (1 HSPs)
scaffold0053 (17-147)||(12554-12684)
[»] chr3 (49 HSPs)
chr3 (32-144)||(37894129-37894241)
chr3 (25-144)||(49761074-49761193)
chr3 (15-143)||(48944599-48944727)
chr3 (25-144)||(52100325-52100444)
chr3 (15-144)||(33796321-33796450)
chr3 (25-144)||(45186439-45186558)
chr3 (15-140)||(36755942-36756067)
chr3 (32-147)||(16479704-16479819)
chr3 (24-144)||(54099244-54099364)
chr3 (15-138)||(52485527-52485650)
chr3 (15-140)||(26452614-26452739)
chr3 (18-107)||(45657694-45657783)
chr3 (25-129)||(26550302-26550406)
chr3 (32-144)||(34592136-34592248)
chr3 (25-140)||(1436881-1436996)
chr3 (25-144)||(29780962-29781081)
chr3 (26-140)||(51698924-51699038)
chr3 (13-138)||(23868872-23868997)
chr3 (32-144)||(26772440-26772553)
chr3 (25-102)||(52714798-52714875)
chr3 (32-102)||(35377011-35377081)
chr3 (15-93)||(52963254-52963332)
chr3 (13-93)||(658744-658824)
chr3 (32-91)||(5114149-5114208)
chr3 (13-91)||(11630691-11630767)
chr3 (27-138)||(12762583-12762694)
chr3 (15-102)||(33791700-33791787)
chr3 (32-91)||(41309188-41309247)
chr3 (15-102)||(49021766-49021853)
chr3 (15-73)||(50314679-50314737)
chr3 (32-90)||(55361175-55361233)
chr3 (43-136)||(36907123-36907216)
chr3 (25-138)||(48287736-48287849)
chr3 (32-144)||(13348022-13348134)
chr3 (15-91)||(44813388-44813464)
chr3 (11-102)||(44962115-44962204)
chr3 (15-73)||(6178384-6178442)
chr3 (34-88)||(8502834-8502888)
chr3 (48-102)||(29916957-29917011)
chr3 (48-102)||(29966110-29966164)
chr3 (15-101)||(45711370-45711456)
chr3 (13-91)||(51982151-51982229)
chr3 (65-138)||(9653371-9653444)
chr3 (15-88)||(41443134-41443207)
chr3 (61-101)||(5527444-5527484)
chr3 (35-91)||(32145926-32145982)
chr3 (15-91)||(42358579-42358655)
chr3 (15-91)||(50876303-50876379)
chr3 (31-91)||(55151658-55151718)
[»] chr8 (37 HSPs)
chr8 (15-146)||(25830131-25830262)
chr8 (15-144)||(33539460-33539589)
chr8 (15-144)||(43715929-43716058)
chr8 (25-144)||(67048-67167)
chr8 (15-140)||(6440136-6440261)
chr8 (15-144)||(12655977-12656106)
chr8 (15-143)||(8671444-8671572)
chr8 (15-146)||(35067215-35067346)
chr8 (36-138)||(35792114-35792216)
chr8 (25-145)||(45405596-45405716)
chr8 (24-140)||(5574319-5574435)
chr8 (43-135)||(33100367-33100459)
chr8 (15-140)||(41639689-41639816)
chr8 (25-138)||(38675668-38675781)
chr8 (17-143)||(7814476-7814607)
chr8 (54-140)||(39453208-39453294)
chr8 (25-107)||(7777106-7777186)
chr8 (15-140)||(3413084-3413209)
chr8 (25-90)||(7795246-7795311)
chr8 (38-140)||(42786549-42786651)
chr8 (32-91)||(10902776-10902835)
chr8 (19-102)||(37133792-37133875)
chr8 (17-91)||(10731602-10731676)
chr8 (43-144)||(3270768-3270869)
chr8 (32-103)||(29025331-29025402)
chr8 (15-102)||(32501126-32501213)
chr8 (43-102)||(42619910-42619969)
chr8 (32-102)||(6972226-6972296)
chr8 (25-146)||(12339044-12339164)
chr8 (35-104)||(15716904-15716972)
chr8 (32-91)||(11253483-11253542)
chr8 (15-90)||(12734953-12735028)
chr8 (35-101)||(34435668-34435733)
chr8 (35-104)||(1068681-1068749)
chr8 (15-103)||(5740714-5740802)
chr8 (26-90)||(13106545-13106609)
chr8 (13-101)||(23754637-23754725)
[»] chr2 (38 HSPs)
chr2 (25-136)||(4657366-4657477)
chr2 (27-144)||(45420202-45420319)
chr2 (36-144)||(3771447-3771555)
chr2 (15-147)||(1040568-1040700)
chr2 (25-140)||(12070912-12071027)
chr2 (15-145)||(19843539-19843669)
chr2 (15-140)||(7084606-7084731)
chr2 (15-144)||(29449266-29449394)
chr2 (15-141)||(42532629-42532755)
chr2 (15-144)||(40700250-40700379)
chr2 (43-144)||(12784284-12784385)
chr2 (15-138)||(14328436-14328559)
chr2 (63-144)||(4319809-4319890)
chr2 (43-144)||(17999565-17999666)
chr2 (69-128)||(40357990-40358049)
chr2 (32-102)||(2076640-2076710)
chr2 (15-140)||(21738509-21738632)
chr2 (15-140)||(43658603-43658726)
chr2 (35-104)||(37316743-37316811)
chr2 (61-146)||(39309510-39309595)
chr2 (19-91)||(27490671-27490743)
chr2 (15-118)||(4138100-4138202)
chr2 (36-102)||(19642673-19642739)
chr2 (15-102)||(33616520-33616609)
chr2 (71-116)||(18982951-18982996)
chr2 (15-102)||(6336307-6336392)
chr2 (26-90)||(7664008-7664072)
chr2 (32-144)||(18846682-18846794)
chr2 (25-144)||(36190908-36191028)
chr2 (25-140)||(26290742-26290857)
chr2 (35-101)||(37731131-37731196)
chr2 (32-102)||(41195655-41195725)
chr2 (32-90)||(44977441-44977499)
chr2 (25-90)||(8427617-8427682)
chr2 (35-88)||(19916730-19916783)
chr2 (33-90)||(42821444-42821500)
chr2 (43-91)||(29349588-29349636)
chr2 (13-73)||(40635767-40635827)
[»] chr6 (25 HSPs)
chr6 (25-144)||(1376429-1376550)
chr6 (25-144)||(1384177-1384298)
chr6 (15-143)||(13423023-13423151)
chr6 (46-138)||(27612960-27613052)
chr6 (68-138)||(33651128-33651198)
chr6 (32-144)||(31869139-31869251)
chr6 (15-144)||(28630153-28630282)
chr6 (15-144)||(9082951-9083078)
chr6 (32-102)||(22079493-22079563)
chr6 (15-101)||(26595403-26595489)
chr6 (84-145)||(16337142-16337203)
chr6 (43-102)||(277073-277132)
chr6 (15-102)||(16337852-16337939)
chr6 (33-103)||(31883232-31883302)
chr6 (35-104)||(18065018-18065086)
chr6 (13-102)||(32316858-32316947)
chr6 (36-91)||(3853248-3853303)
chr6 (25-116)||(10944661-10944752)
chr6 (15-102)||(16367976-16368063)
chr6 (48-143)||(31760176-31760271)
chr6 (32-90)||(20998087-20998145)
chr6 (15-88)||(8645363-8645436)
chr6 (43-92)||(16336909-16336958)
chr6 (11-90)||(3552097-3552174)
chr6 (43-91)||(4820449-4820497)
[»] chr7 (31 HSPs)
chr7 (19-140)||(35822866-35822987)
chr7 (47-135)||(44496699-44496787)
chr7 (15-102)||(48145579-48145666)
chr7 (15-136)||(41590415-41590536)
chr7 (16-147)||(34507090-34507221)
chr7 (15-102)||(42598137-42598224)
chr7 (15-140)||(42584857-42584982)
chr7 (32-147)||(31398196-31398311)
chr7 (25-140)||(41430043-41430158)
chr7 (25-140)||(36352475-36352591)
chr7 (15-102)||(40854584-40854671)
chr7 (25-136)||(26018105-26018216)
chr7 (11-91)||(31445368-31445448)
chr7 (15-138)||(41589979-41590099)
chr7 (24-117)||(46260006-46260099)
chr7 (79-147)||(5174435-5174503)
chr7 (25-144)||(9363452-9363569)
chr7 (43-140)||(34108748-34108847)
chr7 (43-102)||(35207583-35207642)
chr7 (15-90)||(41018718-41018793)
chr7 (15-90)||(43159517-43159591)
chr7 (15-93)||(4292482-4292560)
chr7 (35-102)||(43081820-43081886)
chr7 (35-69)||(3148801-3148835)
chr7 (32-99)||(19562279-19562348)
chr7 (17-91)||(48062113-48062187)
chr7 (43-104)||(2008760-2008820)
chr7 (15-88)||(34978351-34978424)
chr7 (15-75)||(27568072-27568132)
chr7 (43-91)||(30064521-30064569)
chr7 (15-91)||(41189484-41189560)
[»] scaffold0687 (1 HSPs)
scaffold0687 (17-143)||(7116-7247)
[»] scaffold0013 (1 HSPs)
scaffold0013 (25-104)||(94809-94888)
[»] scaffold0662 (1 HSPs)
scaffold0662 (43-146)||(1227-1330)
[»] scaffold0519 (1 HSPs)
scaffold0519 (32-91)||(11853-11912)


Alignment Details
Target: chr4 (Bit Score: 144; Significance: 9e-76; HSPs: 41)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 144; E-Value: 9e-76
Query Start/End: Original strand, 15 - 190
Target Start/End: Complemental strand, 11546917 - 11546742
Alignment:
Q  15 tcatactcgtattatacttttactttccctctctattactttgatatttgtgtcaatacataattttctttgtaaaaatgtggttgtccatttgattgtc 114  Q
    ||||| || ||||||| |||||||||| |||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||    
T  11546917 tcatattcatattatatttttactttctctctctattactttgatatttgtgccaatacataattttttttgtaaaaatgtggttgtccatttgattgtc 11546818  T
Q  115 aagtaaattgatgttcaaataacattactcattcggcaaacatgaaacttttaattattcaattgtttagtgtttt 190  Q
    |||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  11546817 aagtaaattgatgttcaaataacactactcattcggcaaacatggaacttttaattattcaattgtttagtgtttt 11546742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 15 - 144
Target Start/End: Original strand, 49585049 - 49585178
Alignment:
Q  15 tcatactcgtattatacttttactttccctctctattactttgatatttgtgtcaatacataattttctttgtaaaaatgtggttgtccatttgattgtc 114  Q
    ||||||||  |||||| |||||||||| |||||||||||||||||||||||| ||||||||| ||||||| ||||||||||||||||||||||  |||||    
T  49585049 tcatactcacattatatttttactttctctctctattactttgatatttgtgccaatacatacttttcttggtaaaaatgtggttgtccatttagttgtc 49585148  T
Q  115 aagtaaattgatgttcaaataacattactc 144  Q
    ||| ||||| |||||||||||||| |||||    
T  49585149 aagcaaattaatgttcaaataacactactc 49585178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 15 - 147
Target Start/End: Original strand, 50980645 - 50980777
Alignment:
Q  15 tcatactcgtattatacttttactttccctctctattactttgatatttgtgtcaatacataattttctttgtaaaaatgtggttgtccatttgattgtc 114  Q
    ||||||||  |||||| |||||||||| |||| ||||||||||||||||||| ||||||||| ||||||||||||||||||| ||||||||||  |||||    
T  50980645 tcatactcacattatatttttactttctctctatattactttgatatttgtgccaatacatacttttctttgtaaaaatgtgattgtccatttagttgtc 50980744  T
Q  115 aagtaaattgatgttcaaataacattactcatt 147  Q
     || ||||||||||| |||||||||||||||||    
T  50980745 cagcaaattgatgtttaaataacattactcatt 50980777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 15 - 144
Target Start/End: Complemental strand, 1795998 - 1795869
Alignment:
Q  15 tcatactcgtattatacttttactttccctctctattactttgatatttgtgtcaatacataattttctttgtaaaaatgtggttgtccatttgattgtc 114  Q
    ||||||||  |||||| |||||||||  |||||||||||||||||||||||| ||||||||| ||||||| ||||||||||||||||||||||  ||||     
T  1795998 tcatactcacattatatttttactttatctctctattactttgatatttgtgccaatacatacttttcttggtaaaaatgtggttgtccatttagttgtt 1795899  T
Q  115 aagtaaattgatgttcaaataacattactc 144  Q
    ||| |||||||||||||||||||| |||||    
T  1795898 aagcaaattgatgttcaaataacactactc 1795869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 145 - 240
Target Start/End: Original strand, 11446112 - 11446207
Alignment:
Q  145 attcggcaaacatgaaacttttaattattcaattgtttagtgttttccaatttcactactgcaatgcagttgttatcaacatttacaacataagtt 240  Q
    ||||||||| |||  |||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11446112 attcggcaagcattgaacttttaattatatgattgtttagtgttttccaatttcactactgcaatgcagttgttatcaacatttacaacataagtt 11446207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 15 - 136
Target Start/End: Original strand, 48649573 - 48649694
Alignment:
Q  15 tcatactcgtattatacttttactttccctctctattactttgatatttgtgtcaatacataattttctttgtaaaaatgtggttgtccatttgattgtc 114  Q
    ||||||||| ||| || |||||||||  ||||||||||||||||||||||| |||||||||| |||||||||| |||||||||||||| ||||  |||||    
T  48649573 tcatactcgcattttatttttactttttctctctattactttgatatttgtttcaatacatacttttctttgttaaaatgtggttgtctatttagttgtc 48649672  T
Q  115 aagtaaattgatgttcaaataa 136  Q
    ||  ||||||||||||||||||    
T  48649673 aaacaaattgatgttcaaataa 48649694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 15 - 135
Target Start/End: Complemental strand, 44257746 - 44257626
Alignment:
Q  15 tcatactcgtattatacttttactttccctctctattactttgatatttgtgtcaatacataattttctttgtaaaaatgtggttgtccatttgattgtc 114  Q
    ||||||||  |||||| |||||||||| |||||||||| |||||||||||||| |||||||| |||||||| |||||||||| ||||||||||  |||||    
T  44257746 tcatactcacattatatttttactttctctctctattattttgatatttgtgttaatacatacttttctttataaaaatgtgattgtccatttagttgtc 44257647  T
Q  115 aagtaaattgatgttcaaata 135  Q
    ||  |||||||||||||||||    
T  44257646 aaacaaattgatgttcaaata 44257626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 13 - 140
Target Start/End: Original strand, 16019529 - 16019656
Alignment:
Q  13 tttcatactcgtattatacttttactttccctctctattactttgatatttgtgtcaatacataattttctttgtaaaaatgtggttgtccatttgattg 112  Q
    ||||||||||  |||||| |||||||||| ||||||||| ||||||| ||||||||||  |||| |||||||| ||||||| |||||||| || || |||    
T  16019529 tttcatactcacattatatttttactttctctctctattgctttgatttttgtgtcaacgcatatttttctttataaaaatatggttgtcaatatgcttg 16019628  T
Q  113 tcaagtaaattgatgttcaaataacatt 140  Q
    ||||  ||||||||||||||||||||||    
T  16019629 tcaatcaaattgatgttcaaataacatt 16019656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 32 - 143
Target Start/End: Original strand, 193604 - 193715
Alignment:
Q  32 ttttactttccctctctattactttgatatttgtgtcaatacataattttctttgtaaaaatgtggttgtccatttgattgtcaagtaaattgatgttca 131  Q
    ||||| |||| ||||||||||||||||| || ||||||||||||| |||||||||||||||  || ||||| ||||| |||||||| |||| ||||||||    
T  193604 ttttattttctctctctattactttgattttcgtgtcaatacatatttttctttgtaaaaacatgattgtctatttggttgtcaagcaaatagatgttca 193703  T
Q  132 aataacattact 143  Q
    ||||||| ||||    
T  193704 aataacactact 193715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 25 - 144
Target Start/End: Complemental strand, 36123466 - 36123348
Alignment:
Q  25 attatacttttactttccctctctattactttgatatttgtgtcaatacataattttctttgtaaaaatgtggttgtccatttgattgtcaagtaaattg 124  Q
    |||||| |||||||||| ||||||||||||||||| ||||||  ||| |||| |||||||||||||||  | |||||| |||||||||||||| |||| |    
T  36123466 attatatttttactttctctctctattactttgatttttgtgcaaatgcatacttttctttgtaaaaacat-gttgtctatttgattgtcaagcaaatag 36123368  T
Q  125 atgttcaaataacattactc 144  Q
    |||||||||||||| |||||    
T  36123367 atgttcaaataacactactc 36123348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 32 - 147
Target Start/End: Complemental strand, 55609164 - 55609049
Alignment:
Q  32 ttttactttccctctctattactttgatatttgtgtcaatacataattttctttgtaaaaatgtggttgtccatttgattgtcaagtaaattgatgttca 131  Q
    ||||| |||| ||||||||||||||||| || ||| ||||||||| |||||||||||||||   ||||||| ||||| |||||||| |||| ||||||||    
T  55609164 ttttattttctctctctattactttgattttcgtgccaatacatatttttctttgtaaaaacaaggttgtctatttggttgtcaagcaaatagatgttca 55609065  T
Q  132 aataacattactcatt 147  Q
    ||||||| ||||||||    
T  55609064 aataacactactcatt 55609049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 15 - 116
Target Start/End: Complemental strand, 31574956 - 31574855
Alignment:
Q  15 tcatactcgtattatacttttactttccctctctattactttgatatttgtgtcaatacataattttctttgtaaaaatgtggttgtccatttgattgtc 114  Q
    ||||||||  |||||| ||||| |||| ||||||||| ||||||| ||||| ||||||||| ||||||||||||||||  ||||||||||| || |||||    
T  31574956 tcatactcacattatatttttattttctctctctattgctttgatttttgtatcaatacatgattttctttgtaaaaagatggttgtccatgtggttgtc 31574857  T
Q  115 aa 116  Q
    ||    
T  31574856 aa 31574855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 32 - 140
Target Start/End: Original strand, 15522426 - 15522534
Alignment:
Q  32 ttttactttccctctctattactttgatatttgtgtcaatacataattttctttgtaaaaatgtggttgtccatttgattgtcaagtaaattgatgttca 131  Q
    |||||||||  |||| |||| ||||| | || |||||||||||| ||||||||||||||||  ||||||||||| || |||||||  | |||||||||||    
T  15522426 ttttactttatctctatattgctttggttttcgtgtcaatacatgattttctttgtaaaaagatggttgtccatgtggttgtcaatcacattgatgttca 15522525  T
Q  132 aataacatt 140  Q
    |||||||||    
T  15522526 aataacatt 15522534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 43 - 138
Target Start/End: Complemental strand, 19165421 - 19165325
Alignment:
Q  43 ctctctattactttgatatttgtgtcaatacataattttctttgtaaaaatgtggttgtccatttga-ttgtcaagtaaattgatgttcaaataaca 138  Q
    |||||||||  |||| | |||||| ||||||||| |||||||||||||||| |||||||||||| || |||||||  ||||||||||||||||||||    
T  19165421 ctctctattgttttggtttttgtgccaatacatatttttctttgtaaaaatatggttgtccattagatttgtcaaacaaattgatgttcaaataaca 19165325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 43 - 146
Target Start/End: Original strand, 47015088 - 47015191
Alignment:
Q  43 ctctctattactttgatatttgtgtcaatacataattttctttgtaaaaatgtggttgtccatttgattgtcaagtaaattgatgttcaaataacattac 142  Q
    ||||||||| ||||| | |||||| ||||| ||| |||||||||||||||| || ||||| || || |||||||  ||| |||||||||||||||||| |    
T  47015088 ctctctattgctttggtttttgtgccaatagatacttttctttgtaaaaatatgattgtcaatgtggttgtcaaccaaactgatgttcaaataacattgc 47015187  T
Q  143 tcat 146  Q
    ||||    
T  47015188 tcat 47015191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 26 - 138
Target Start/End: Original strand, 50633631 - 50633744
Alignment:
Q  26 ttatacttttactttccctctctattactttgatatttgtgtcaatacataattttctttgtaaaaatgtggttgtcc--atttgattgtcaagtaaatt 123  Q
    ||||| |||| ||||| ||||||||||||||| | || |||||||||||| ||||| ||||||||||| | ||| |||  |||||||||||||  |||||    
T  50633631 ttataatttttctttctctctctattactttggttttcgtgtcaatacat-attttttttgtaaaaatatagttatccatatttgattgtcaaacaaatt 50633729  T
Q  124 gatgttcaaataaca 138  Q
    |||||| ||||||||    
T  50633730 gatgtttaaataaca 50633744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 15 - 101
Target Start/End: Original strand, 37997308 - 37997394
Alignment:
Q  15 tcatactcgtattatacttttactttccctctctattactttgatatttgtgtcaatacataattttctttgtaaaaatgtggttgt 101  Q
    ||||||||  |||||  |||||||||| ||||||||| ||||||| ||||||||||||| | ||||||||||||||| | |||||||    
T  37997308 tcatactcacattatctttttactttctctctctattgctttgatttttgtgtcaatacctcattttctttgtaaaattttggttgt 37997394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 25 - 145
Target Start/End: Complemental strand, 31468995 - 31468875
Alignment:
Q  25 attatacttttactttccctctctattactttgatatttgtgtcaatacataattttctttgtaaaaatgtggttgtccatttgattgtcaagtaaattg 124  Q
    |||||| |||||||||   |||||||||||||  | || |||||||||||| ||||||||||||||||  || ||||| || || |||||||  | ||||    
T  31468995 attatatttttactttatttctctattactttagttttcgtgtcaatacatgattttctttgtaaaaagatgattgtctatatggttgtcaatcacattg 31468896  T
Q  125 atgttcaaataacattactca 145  Q
    || ||||||||||||| ||||    
T  31468895 atattcaaataacattgctca 31468875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 24 - 140
Target Start/End: Complemental strand, 34757916 - 34757800
Alignment:
Q  24 tattatacttttactttccctctctattactttgatatttgtgtcaatacataattttctttgtaaaaatgtggttgtccatttgattgtcaagtaaatt 123  Q
    ||||||| |||||||||| || ||||||  |||||| |||||| ||| ||||  |||||||||||||||| || |||||  | ||||||||||  |||||    
T  34757916 tattatatttttactttctctttctattgatttgatttttgtgccaacacatgtttttctttgtaaaaatatgattgtcagtgtgattgtcaatcaaatt 34757817  T
Q  124 gatgttcaaataacatt 140  Q
    ||| || ||||||||||    
T  34757816 gatatttaaataacatt 34757800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 24 - 140
Target Start/End: Complemental strand, 34759190 - 34759074
Alignment:
Q  24 tattatacttttactttccctctctattactttgatatttgtgtcaatacataattttctttgtaaaaatgtggttgtccatttgattgtcaagtaaatt 123  Q
    ||||||| |||||||||| || ||||||  |||||| |||||| ||| ||||  |||||||||||||||| || |||||  | ||||||||||  |||||    
T  34759190 tattatatttttactttctctttctattgatttgatttttgtgccaacacatgtttttctttgtaaaaatatgattgtcagtgtgattgtcaatcaaatt 34759091  T
Q  124 gatgttcaaataacatt 140  Q
    ||| || ||||||||||    
T  34759090 gatatttaaataacatt 34759074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 25 - 129
Target Start/End: Complemental strand, 46665201 - 46665097
Alignment:
Q  25 attatacttttactttccctctctattactttgatatttgtgtcaatacataattttctttgtaaaaatgtggttgtccatttgattgtcaagtaaattg 124  Q
    |||||| ||||| |||| |||||| || ||||||| ||| || ||||||||| ||||||||||||| || |||||||| ||||| |||||||  || |||    
T  46665201 attatatttttattttctctctcttttgctttgatttttatgccaatacatacttttctttgtaaatatatggttgtcaatttggttgtcaatcaagttg 46665102  T
Q  125 atgtt 129  Q
    |||||    
T  46665101 atgtt 46665097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 15 - 102
Target Start/End: Original strand, 39478489 - 39478578
Alignment:
Q  15 tcatactcgtattatacttttactttccctctctat--tactttgatatttgtgtcaatacataattttctttgtaaaaatgtggttgtc 102  Q
    |||||||| ||||||  ||||||||||  |||||||  ||||||||| ||||||||||||| | ||||||||||||||| | ||||||||    
T  39478489 tcatactcatattatttttttactttctttctctatattactttgatttttgtgtcaatacctcattttctttgtaaaattttggttgtc 39478578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 222 - 259
Target Start/End: Complemental strand, 11546712 - 11546675
Alignment:
Q  222 aacatttacaacataagttcattaaccattttaactac 259  Q
    ||||||||||||||||||||||||||||||||||||||    
T  11546712 aacatttacaacataagttcattaaccattttaactac 11546675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 25 - 138
Target Start/End: Original strand, 32223996 - 32224108
Alignment:
Q  25 attatacttttactttccctctctattactttgatatttgtgtcaatacataattttctttgtaaaaatgtggttgtccatttgattgtcaagtaaattg 124  Q
    |||||| |||||||||  |||||||||| ||| || |||||| |||| |||| |||||||||||||||  ||||| || ||||  |||||||| |||| |    
T  32223996 attatatttttacttttactctctattattttaatttttgtgccaatgcata-ttttctttgtaaaaacatggttatctatttagttgtcaagcaaatag 32224094  T
Q  125 atgttcaaataaca 138  Q
    |||||| |||||||    
T  32224095 atgttcgaataaca 32224108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 26 - 90
Target Start/End: Complemental strand, 10474118 - 10474054
Alignment:
Q  26 ttatacttttactttccctctctattactttgatatttgtgtcaatacataattttctttgtaaa 90  Q
    ||||| |||||||||  ||||||||||||||||| ||||||||||||| |  |||||||||||||    
T  10474118 ttatatttttactttttctctctattactttgatttttgtgtcaatacttctttttctttgtaaa 10474054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 15 - 90
Target Start/End: Complemental strand, 1627575 - 1627500
Alignment:
Q  15 tcatactcgtattatacttttactttccctctctattactttgatatttgtgtcaatacataattttctttgtaaa 90  Q
    ||||||||| |||||  ||||||||||||||||| || ||||| | |||||| |||||| | ||||||||||||||    
T  1627575 tcatactcgcattatgtttttactttccctctctgttgctttggtttttgtgccaatacctcattttctttgtaaa 1627500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 32 - 86
Target Start/End: Complemental strand, 48796532 - 48796478
Alignment:
Q  32 ttttactttccctctctattactttgatatttgtgtcaatacataattttctttg 86  Q
    |||||||||| |||||| || ||||||||||||||||||||| || |||||||||    
T  48796532 ttttactttctctctcttttgctttgatatttgtgtcaatacctatttttctttg 48796478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 13 - 91
Target Start/End: Complemental strand, 50608643 - 50608565
Alignment:
Q  13 tttcatactcgtattatacttttactttccctctctattactttgatatttgtgtcaatacataattttctttgtaaaa 91  Q
    ||||||||||  |||||  |||||||| | ||||||||||||||||| ||||||||||||  | |||| ||||||||||    
T  50608643 tttcatactcacattatttttttacttcctctctctattactttgatttttgtgtcaatatctcatttcctttgtaaaa 50608565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 33 - 103
Target Start/End: Complemental strand, 50831754 - 50831684
Alignment:
Q  33 tttactttccctctctattactttgatatttgtgtcaatacataattttctttgtaaaaatgtggttgtcc 103  Q
    ||||||||| ||||||||| ||||||| |||||||||| || |  |||||||||||||| | |||||||||    
T  50831754 tttactttctctctctattgctttgatttttgtgtcaagacctctttttctttgtaaaattatggttgtcc 50831684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 35 - 88
Target Start/End: Complemental strand, 29227239 - 29227186
Alignment:
Q  35 tactttccctctctattactttgatatttgtgtcaatacataattttctttgta 88  Q
    ||||||| ||||||||| ||||||||||||||||| ||| ||| ||||||||||    
T  29227239 tactttctctctctattgctttgatatttgtgtcactacctaaatttctttgta 29227186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 25 - 101
Target Start/End: Complemental strand, 12387672 - 12387596
Alignment:
Q  25 attatacttttactttccctctctattactttgatatttgtgtcaatacataattttctttgtaaaaatgtggttgt 101  Q
    |||||| |||||||||  |||| ||||  |||||| ||||||||||||| | |||||||||||||| || |||||||    
T  12387672 attatatttttactttgtctctttattgttttgatttttgtgtcaatacctcattttctttgtaaatatatggttgt 12387596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 15 - 91
Target Start/End: Original strand, 46634154 - 46634230
Alignment:
Q  15 tcatactcgtattatacttttactttccctctctattactttgatatttgtgtcaatacataattttctttgtaaaa 91  Q
    ||||||||  |||||  |||||||||| || |||||||||||||| ||||||||| ||| | |||| ||||||||||    
T  46634154 tcatactcacattatctttttactttctctttctattactttgatttttgtgtcactacctcatttcctttgtaaaa 46634230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 15 - 102
Target Start/End: Complemental strand, 10250532 - 10250445
Alignment:
Q  15 tcatactcgtattatacttttactttccctctctattactttgatatttgtgtcaatacataattttctttgtaaaaatgtggttgtc 102  Q
    ||||||||  |||||  |||||||||| ||||||||| ||||| | |||||| || ||| | ||||||||||||||| | ||||||||    
T  10250532 tcatactcacattatctttttactttctctctctattgctttggtttttgtgccactacttcattttctttgtaaaattttggttgtc 10250445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 43 - 90
Target Start/End: Original strand, 39654906 - 39654953
Alignment:
Q  43 ctctctattactttgatatttgtgtcaatacataattttctttgtaaa 90  Q
    ||||||||| ||||||| ||||||||||||| | ||||||||||||||    
T  39654906 ctctctattgctttgatttttgtgtcaatacctcattttctttgtaaa 39654953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 103
Target Start/End: Complemental strand, 12595641 - 12595559
Alignment:
Q  21 tcgtattatacttttactttccctctctattactttgatatttgtgtcaatacataattttctttgtaaaaatgtggttgtcc 103  Q
    ||||||||||||||||||||| |||||||||  |||| | || |||||||||| || ||| |||| ||||  | |||||||||    
T  12595641 tcgtattatacttttactttctctctctattgttttggttttcgtgtcaatacctactttcctttataaatttatggttgtcc 12595559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 144
Target Start/End: Original strand, 20118846 - 20118967
Alignment:
Q  25 attatacttttactttccctctctatt--actttgatatttgtgtcaatacataattttctttgtaaaaatgtggttgtccatttgattgtcaagtaaat 122  Q
    |||||| ||||||||||  ||||||||  |||||  | || || ||||||||||||||||||| |||||||   |||||||| ||| |||||||  ||||    
T  20118846 attatatttttactttctatctctattttactttagttttcgtatcaatacataattttctttataaaaataacgttgtccaattggttgtcaaacaaat 20118945  T
Q  123 tgatgttcaaataacattactc 144  Q
      || ||||||||||| |||||    
T  20118946 aaatattcaaataacagtactc 20118967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 92
Target Start/End: Complemental strand, 38792906 - 38792831
Alignment:
Q  15 tcatactcgtattatacttttactttccctctctattactttgatatttgtgtcaatacataattttctttgtaaaaa 92  Q
    ||||||||  |||||| ||||||||||  |||||||| ||||||| |||||  ||| ||||| |||||||||||||||    
T  38792906 tcatactcacattatatttttactttc--tctctattgctttgatttttgtaccaacacatacttttctttgtaaaaa 38792831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 91
Target Start/End: Original strand, 42853633 - 42853707
Alignment:
Q  17 atactcgtattatacttttactttccctctctattactttgatatttgtgtcaatacataattttctttgtaaaa 91  Q
    |||||| ||||||  ||| |||||| ||||||||| ||||| | ||||||||||||| | ||||||||| |||||    
T  42853633 atactcatattatgttttcactttctctctctattgctttggtttttgtgtcaatacctcattttctttataaaa 42853707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 91
Target Start/End: Complemental strand, 50721763 - 50721685
Alignment:
Q  13 tttcatactcgtattatacttttactttccctctctattactttgatatttgtgtcaatacataattttctttgtaaaa 91  Q
    ||||||||||  |||||| |||||||||| ||||||| | ||||| | |||||||||||   | |||||||||||||||    
T  50721763 tttcatactcacattatatttttactttctctctctactgctttggtttttgtgtcaatcactcattttctttgtaaaa 50721685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 15 - 88
Target Start/End: Original strand, 5386427 - 5386500
Alignment:
Q  15 tcatactcgtattatacttttactttccctctctattactttgatatttgtgtcaatacataattttctttgta 88  Q
    ||||||||  ||||| ||||||||||| ||||||||| ||||||| ||||||| | ||  ||| ||||||||||    
T  5386427 tcatactcacattattcttttactttctctctctattgctttgatttttgtgttactatctaaatttctttgta 5386500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 10 - 102
Target Start/End: Complemental strand, 53801779 - 53801689
Alignment:
Q  10 ttttttcatactcgtattatacttttactttccctctctattactttgatatttgtgtcaatacataattttctttgtaaaaatgtggttgtc 102  Q
    |||||||||||||  |||||  ||||||||||  |||||||| ||||  | ||||||||||||| | |||| |||||||||| | ||||||||    
T  53801779 ttttttcatactcacattatctttttactttc--tctctattgctttagtttttgtgtcaatacctcatttcctttgtaaaattttggttgtc 53801689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 91; Significance: 4e-44; HSPs: 27)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 15 - 145
Target Start/End: Original strand, 22098310 - 22098440
Alignment:
Q  15 tcatactcgtattatacttttactttccctctctattactttgatatttgtgtcaatacataattttctttgtaaaaatgtggttgtccatttgattgtc 114  Q
    ||||||||  |||||| |||||||||| |||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||| ||| ||    
T  22098310 tcatactcacattatatttttactttctctctctattactttgatatttgtgccaatacatacttttctttgtaaaaatgtggttgtccatttaattatc 22098409  T
Q  115 aagtaaattgatgttcaaataacattactca 145  Q
    ||| |||||||||||||||||||| ||||||    
T  22098410 aagcaaattgatgttcaaataacactactca 22098440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 15 - 140
Target Start/End: Original strand, 884496 - 884621
Alignment:
Q  15 tcatactcgtattatacttttactttccctctctattactttgatatttgtgtcaatacataattttctttgtaaaaatgtggttgtccatttgattgtc 114  Q
    ||||||||  |||||| |||||||||| || ||||||  |||||| |||||| ||| ||||| ||||| |||||||||| |||||||  || ||||||||    
T  884496 tcatactcacattatatttttactttctctttctattgttttgatttttgtgccaacacatacttttcattgtaaaaatatggttgttaatatgattgtc 884595  T
Q  115 aagtaaattgatgttcaaataacatt 140  Q
    || |||||||||||||||||||||||    
T  884596 aactaaattgatgttcaaataacatt 884621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 13 - 140
Target Start/End: Original strand, 16690552 - 16690679
Alignment:
Q  13 tttcatactcgtattatacttttactttccctctctattactttgatatttgtgtcaatacataattttctttgtaaaaatgtggttgtccatttgattg 112  Q
    ||||||||||  |||||| ||||||||||  |||||||| ||||| | |||||| ||| ||||| |||||||||||||||| |||||||| || || |||    
T  16690552 tttcatactcacattatatttttactttctttctctattgctttggtttttgtgccaacacatacttttctttgtaaaaatatggttgtcaatgtggttg 16690651  T
Q  113 tcaagtaaattgatgttcaaataacatt 140  Q
    ||||  |||||||| |||||||||||||    
T  16690652 tcaaccaaattgatattcaaataacatt 16690679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 33 - 136
Target Start/End: Complemental strand, 14321953 - 14321850
Alignment:
Q  33 tttactttccctctctattactttgatatttgtgtcaatacataattttctttgtaaaaatgtggttgtccatttgattgtcaagtaaattgatgttcaa 132  Q
    |||| |||| ||||||||| ||||| | ||  | ||||||||||||||||||||||||| | ||||||||||| || ||||||| |||||||||||||||    
T  14321953 tttattttctctctctattgctttggttttcatatcaatacataattttctttgtaaaagtatggttgtccatatggttgtcaattaaattgatgttcaa 14321854  T
Q  133 ataa 136  Q
    ||||    
T  14321853 ataa 14321850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 15 - 138
Target Start/End: Original strand, 40364623 - 40364746
Alignment:
Q  15 tcatactcgtattatacttttactttccctctctattactttgatatttgtgtcaatacataattttctttgtaaaaatgtggttgtccatttgattgtc 114  Q
    ||||||||  |||||| || ||||||| ||||||||||||||||| |||||| | ||  ||| |||||||| ||||||  ||||| || |||||||||||    
T  40364623 tcatactcacattatatttctactttctctctctattactttgatttttgtgccgatgtatacttttctttctaaaaacatggttatctatttgattgtc 40364722  T
Q  115 aagtaaattgatgttcaaataaca 138  Q
    ||| |||| |||||||||||||||    
T  40364723 aagcaaatagatgttcaaataaca 40364746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 15 - 145
Target Start/End: Complemental strand, 38293375 - 38293244
Alignment:
Q  15 tcatactcgtattatacttttactttccctctctattactttgatatttgtgtcaat--acataattttctttgtaaaaatgtggttgtccatttgattg 112  Q
    ||||||||  |||||| |||||| ||| ||||||||||||||||| |||||| ||||  | ||| |||||||||||||||  || ||||| ||||| |||    
T  38293375 tcatactcacattatatttttaccttctctctctattactttgat-tttgtgccaatgtatatacttttctttgtaaaaacatgattgtctatttggttg 38293277  T
Q  113 tcaagtaaattgatgttcaaataacattactca 145  Q
    ||||| |||| ||||||||||||||| ||||||    
T  38293276 tcaagcaaatagatgttcaaataacactactca 38293244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 15 - 140
Target Start/End: Original strand, 38493679 - 38493805
Alignment:
Q  15 tcatactcgtattatacttttactttccctctctattactttgatattt-gtgtcaatacataattttctttgtaaaaatgtggttgtccatttgattgt 113  Q
    ||||||||  |||||| |||||||||  ||||||||| ||||||| ||| ||| ||| ||||| |||||||||| ||||| ||| |||| || || ||||    
T  38493679 tcatactcacattataattttactttatctctctattgctttgattttttgtgccaacacatacttttctttgttaaaatatgggtgtcaatgtggttgt 38493778  T
Q  114 caagtaaattgatgttcaaataacatt 140  Q
    |||  ||||||||||||||||||||||    
T  38493779 caaccaaattgatgttcaaataacatt 38493805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 32 - 93
Target Start/End: Original strand, 41699525 - 41699586
Alignment:
Q  32 ttttactttccctctctattactttgatatttgtgtcaatacataattttctttgtaaaaat 93  Q
    |||||||||| |||||||||| |||||| || ||||||||||||||||||||||||||||||    
T  41699525 ttttactttctctctctattaatttgattttcgtgtcaatacataattttctttgtaaaaat 41699586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 43 - 143
Target Start/End: Original strand, 32639126 - 32639226
Alignment:
Q  43 ctctctattactttgatatttgtgtcaatacataattttctttgtaaaaatgtggttgtccatttgattgtcaagtaaattgatgttcaaataacattac 142  Q
    |||| |||||||||||| || |||  |||||||| ||||||||||||||||  | ||||| |||||||||||| | |||| ||||||||||||||| |||    
T  32639126 ctctatattactttgattttcgtgctaatacatacttttctttgtaaaaataagattgtctatttgattgtcatgcaaatagatgttcaaataacactac 32639225  T
Q  143 t 143  Q
    |    
T  32639226 t 32639226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 15 - 145
Target Start/End: Original strand, 40829469 - 40829599
Alignment:
Q  15 tcatactcgtattatacttttactttccctctctattactttgatatttgtgtcaatacataattttctttgtaaaaatgtggttgtccatttgattgtc 114  Q
    ||||||||  |||||| |||||||||  |||||||||||||| || || |||  |||||||| |||||||| | ||||| | |||||| ||||| |||||    
T  40829469 tcatactcacattatatttttactttatctctctattactttaattttcgtgctaatacatacttttctttatgaaaatttagttgtcaatttggttgtc 40829568  T
Q  115 aagtaaattgatgttcaaataacattactca 145  Q
    |   ||| | |||||||||||||||||||||    
T  40829569 acacaaagtaatgttcaaataacattactca 40829599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 25 - 145
Target Start/End: Complemental strand, 6758797 - 6758676
Alignment:
Q  25 attatacttttactttccctctctattactttgatatttgtgtcaatacataattttctttg-taaaaatgtggttgtccatttgattgtcaagtaaatt 123  Q
    |||||| ||||| |||  ||||||||| ||||| | || |||||||||||| ||||||||||  |||||  ||||||||||| || |||||||  | |||    
T  6758797 attatatttttattttatctctctattgctttggttttcgtgtcaatacatgattttctttgaaaaaaaaatggttgtccatgtggttgtcaatcatatt 6758698  T
Q  124 gatgttcaaataacattactca 145  Q
    ||||||||||||||||| ||||    
T  6758697 gatgttcaaataacattgctca 6758676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 13 - 145
Target Start/End: Complemental strand, 9168183 - 9168054
Alignment:
Q  13 tttcatactcgtattatacttttactttccctctctattactttgatatttgtgtcaatacataattttctttgtaaaaatgtggttgtccatttgattg 112  Q
    ||||||||||  |||||| ||||| ||||  |||||||| ||||| | |||||| ||| ||||| |||||||||||||| | || ||||| || || |||    
T  9168183 tttcatactcacattatatttttattttc--tctctattgctttggtttttgtgccaacacatacttttctttgtaaaa-tatgattgtcaatatggttg 9168087  T
Q  113 tcaagtaaattgatgttcaaataacattactca 145  Q
    ||||  |||||||||||||||||||||| ||||    
T  9168086 tcaaccaaattgatgttcaaataacattgctca 9168054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 13 - 102
Target Start/End: Complemental strand, 7287208 - 7287119
Alignment:
Q  13 tttcatactcgtattatacttttactttccctctctattactttgatatttgtgtcaatacataattttctttgtaaaaatgtggttgtc 102  Q
    ||||||||||  |||||| |||||||||| |||||||||  |||| | ||||||||| ||| | ||||||||||||||| | ||||||||    
T  7287208 tttcatactcacattatatttttactttctctctctattgttttggtttttgtgtcactacctcattttctttgtaaaattttggttgtc 7287119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 35 - 102
Target Start/End: Original strand, 41321329 - 41321396
Alignment:
Q  35 tactttccctctctattactttgatatttgtgtcaatacataattttctttgtaaaaatgtggttgtc 102  Q
    ||||||| ||||||||||||||| | ||||||||||||| | |||| |||||||||| | ||||||||    
T  41321329 tactttctctctctattactttggtttttgtgtcaatacctcatttcctttgtaaaattttggttgtc 41321396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 32 - 102
Target Start/End: Original strand, 13309954 - 13310024
Alignment:
Q  32 ttttactttccctctctattactttgatatttgtgtcaatacataattttctttgtaaaaatgtggttgtc 102  Q
    |||||||||| ||||||| ||||||| | ||||||| ||||| | ||||||||||||||||| || |||||    
T  13309954 ttttactttctctctctactactttggtttttgtgttaatacctcattttctttgtaaaaatttgattgtc 13310024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 13 - 90
Target Start/End: Complemental strand, 2678102 - 2678025
Alignment:
Q  13 tttcatactcgtattatacttttactttccctctctattactttgatatttgtgtcaatacataattttctttgtaaa 90  Q
    |||||||||| ||||||| || |||||||  ||| ||||| |||||| || || |||||||||| |||||||||||||    
T  2678102 tttcatactcatattatatttctactttctttctttattattttgattttcgtatcaatacatatttttctttgtaaa 2678025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 13 - 138
Target Start/End: Original strand, 4088496 - 4088621
Alignment:
Q  13 tttcatactcgtattatacttttactttccctctctattactttgatatttgtgtcaatacataattttctttgtaaaaatgtggttgtccatttgattg 112  Q
    ||||||||||  |||||| ||||||||||  |||||||| ||||| | || |||  ||||||||  ||||||||||||||| || |||||   | | |||    
T  4088496 tttcatactcacattatatttttactttctttctctattgctttggttttcgtgctaatacatacatttctttgtaaaaatatgattgtcacataggttg 4088595  T
Q  113 tcaagtaaattgatgttcaaataaca 138  Q
    ||||  |||| |||||||||||||||    
T  4088596 tcaaaaaaatagatgttcaaataaca 4088621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 35 - 88
Target Start/End: Complemental strand, 17097798 - 17097745
Alignment:
Q  35 tactttccctctctattactttgatatttgtgtcaatacataattttctttgta 88  Q
    ||||||| || |||||||||||||| ||||||||| ||| ||||||||||||||    
T  17097798 tactttctctttctattactttgatttttgtgtcactacctaattttctttgta 17097745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 15 - 91
Target Start/End: Original strand, 5168237 - 5168313
Alignment:
Q  15 tcatactcgtattatacttttactttccctctctattactttgatatttgtgtcaatacataattttctttgtaaaa 91  Q
    ||||||||  |||||  |||||||||| ||||||||| ||||||| |||||| || ||| | |||||||||||||||    
T  5168237 tcatactcacattatctttttactttctctctctattgctttgatttttgtgccactacctcattttctttgtaaaa 5168313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 24 - 88
Target Start/End: Original strand, 22529034 - 22529098
Alignment:
Q  24 tattatacttttactttccctctctattactttgatatttgtgtcaatacataattttctttgta 88  Q
    ||||||| |||||||||  |||| | |||||||||| |||||||||||| ||| |||||||||||    
T  22529034 tattatatttttactttatctctttgttactttgatttttgtgtcaatagatagttttctttgta 22529098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 64 - 115
Target Start/End: Original strand, 29687181 - 29687232
Alignment:
Q  64 gtgtcaatacataattttctttgtaaaaatgtggttgtccatttgattgtca 115  Q
    ||||||||||||| |||||||||||||||| | ||||||||| | |||||||    
T  29687181 gtgtcaatacatacttttctttgtaaaaatatagttgtccatataattgtca 29687232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 15 - 90
Target Start/End: Complemental strand, 33958276 - 33958201
Alignment:
Q  15 tcatactcgtattatacttttactttccctctctattactttgatatttgtgtcaatacataattttctttgtaaa 90  Q
    ||||||||  |||||| |||||||||| ||||||||| ||||| | ||||||||||||  |  |||||||||||||    
T  33958276 tcatactcacattatatttttactttctctctctattgctttggtttttgtgtcaatatctctttttctttgtaaa 33958201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 105
Target Start/End: Original strand, 19952054 - 19952144
Alignment:
Q  15 tcatactcgtattatacttttactttccctctctattactttgatatttgtgtcaatacataattttctttgtaaaaatgtggttgtccat 105  Q
    |||||||| ||||||  ||||||||||  ||||||||  |||||| |  | |||||||| ||||||||||||||||  | |||||||||||    
T  19952054 tcatactcatattatgtttttactttctatctctattgttttgatttccgcgtcaatacctaattttctttgtaaatttatggttgtccat 19952144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 91
Target Start/End: Original strand, 27487959 - 27488017
Alignment:
Q  33 tttactttccctctctattactttgatatttgtgtcaatacataattttctttgtaaaa 91  Q
    ||||||||| ||||||||| ||||| | |||||| |||||  |||||||||||||||||    
T  27487959 tttactttctctctctattgctttggtttttgtgccaatatttaattttctttgtaaaa 27488017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 32 - 73
Target Start/End: Original strand, 2972395 - 2972436
Alignment:
Q  32 ttttactttccctctctattactttgatatttgtgtcaatac 73  Q
    |||||||||| ||||||||| ||||||| |||||||||||||    
T  2972395 ttttactttctctctctattgctttgatttttgtgtcaatac 2972436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 43 - 103
Target Start/End: Original strand, 21353226 - 21353286
Alignment:
Q  43 ctctctattactttgatatttgtgtcaatacataattttctttgtaaaaatgtggttgtcc 103  Q
    ||||||||||||||  | ||||||| |||||||  |||||||||||||| | |||||||||    
T  21353226 ctctctattactttagtttttgtgttaatacatctttttctttgtaaaattatggttgtcc 21353286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 34 - 102
Target Start/End: Complemental strand, 28306130 - 28306062
Alignment:
Q  34 ttactttccctctctattactttgatatttgtgtcaatacataattttctttgtaaaaatgtggttgtc 102  Q
    |||||||| ||||||||| ||||| | |||||| || ||| | ||||||||||||||| | ||||||||    
T  28306130 ttactttctctctctattgctttggtctttgtgccactacctcattttctttgtaaaattttggttgtc 28306062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 88; Significance: 2e-42; HSPs: 43)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 13 - 144
Target Start/End: Original strand, 30973605 - 30973736
Alignment:
Q  13 tttcatactcgtattatacttttactttccctctctattactttgatatttgtgtcaatacataattttctttgtaaaaatgtggttgtccatttgattg 112  Q
    |||||||||| ||||||| ||||| |||  |||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||  |||    
T  30973605 tttcatactcatattatatttttattttttctctctattactttgatatttgtgtcaatacatacttttctttgtaaaaatgtgattgtccatttagttg 30973704  T
Q  113 tcaagtaaattgatgttcaaataacattactc 144  Q
    ||||| |||||||||||||||||||| |||||    
T  30973705 tcaagcaaattgatgttcaaataacactactc 30973736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 15 - 144
Target Start/End: Complemental strand, 12999839 - 12999710
Alignment:
Q  15 tcatactcgtattatacttttactttccctctctattactttgatatttgtgtcaatacataattttctttgtaaaaatgtggttgtccatttgattgtc 114  Q
    ||||||||  |||||| |||||||||| || ||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||  |||||    
T  12999839 tcatactcacattatatttttactttctctttctattactttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtccatttagttgtc 12999740  T
Q  115 aagtaaattgatgttcaaataacattactc 144  Q
    ||| |||||||||||||||||||| |||||    
T  12999739 aagcaaattgatgttcaaataacactactc 12999710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 15 - 138
Target Start/End: Original strand, 33076174 - 33076297
Alignment:
Q  15 tcatactcgtattatacttttactttccctctctattactttgatatttgtgtcaatacataattttctttgtaaaaatgtggttgtccatttgattgtc 114  Q
    ||||||||  |||||| ||||| |||| |||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||| ||| ||    
T  33076174 tcatactcacattatatttttattttctctctctattactttgatatttgtgccaatacataattttctttgtaaaattgtggttgtccatttaattatc 33076273  T
Q  115 aagtaaattgatgttcaaataaca 138  Q
    ||| ||||||||||||||||||||    
T  33076274 aagcaaattgatgttcaaataaca 33076297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 15 - 140
Target Start/End: Complemental strand, 34818061 - 34817936
Alignment:
Q  15 tcatactcgtattatacttttactttccctctctattactttgatatttgtgtcaatacataattttctttgtaaaaatgtggttgtccatttgattgtc 114  Q
    |||||||| ||||||| |||||||||| || |||||| ||||||| |||||| ||| ||||| |||||||||||||||| |||||||| || ||||||||    
T  34818061 tcatactcatattatatttttactttctctttctattgctttgatttttgtgccaacacatatttttctttgtaaaaatatggttgtcaatatgattgtc 34817962  T
Q  115 aagtaaattgatgttcaaataacatt 140  Q
    || |||||||||||||||||||||||    
T  34817961 aactaaattgatgttcaaataacatt 34817936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 25 - 141
Target Start/End: Complemental strand, 49446804 - 49446684
Alignment:
Q  25 attatacttttactttccctctctattactttgatatttgtgtcaatacataa----ttttctttgtaaaaatgtggttgtccatttgattgtcaagtaa 120  Q
    |||||| |||||||||| |||||||||||||||||||||||| |||||||||     ||||||||||||||||||| ||||||||||  |||||||| ||    
T  49446804 attatatttttactttctctctctattactttgatatttgtgccaatacatacatatttttctttgtaaaaatgtgattgtccatttagttgtcaagcaa 49446705  T
Q  121 attgatgttcaaataacatta 141  Q
    |||||||||||||||||||||    
T  49446704 attgatgttcaaataacatta 49446684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 25 - 143
Target Start/End: Original strand, 49931618 - 49931736
Alignment:
Q  25 attatacttttactttccctctctattactttgatatttgtgtcaatacataattttctttgtaaaaatgtggttgtccatttgattgtcaagtaaattg 124  Q
    |||||| |||||||||  ||||||| |||||||||||||||| ||||||||| ||||||||| ||||||||||||||||||||  || ||||| ||||||    
T  49931618 attatatttttactttatctctctaatactttgatatttgtgccaatacatacttttctttggaaaaatgtggttgtccatttagttatcaagcaaattg 49931717  T
Q  125 atgttcaaataacattact 143  Q
    |||||||||||||| ||||    
T  49931718 atgttcaaataacactact 49931736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 15 - 140
Target Start/End: Original strand, 29877352 - 29877477
Alignment:
Q  15 tcatactcgtattatacttttactttccctctctattactttgatatttgtgtcaatacataattttctttgtaaaaatgtggttgtccatttgattgtc 114  Q
    |||||||| |||| ||  ||||||||| |||||||||  |||| | || |||||||||||||||||||||||||||||| ||||||||||| ||||||||    
T  29877352 tcatactcatattgtatctttactttctctctctattgttttggttttcgtgtcaatacataattttctttgtaaaaatatggttgtccatatgattgtc 29877451  T
Q  115 aagtaaattgatgttcaaataacatt 140  Q
    ||  ||||||||||||||||||||||    
T  29877452 aataaaattgatgttcaaataacatt 29877477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 15 - 144
Target Start/End: Original strand, 30536046 - 30536171
Alignment:
Q  15 tcatactcgtattatacttttactttccctctctattactttgatatttgtgtcaatacataattttctttgtaaaaatgtggttgtccatttgattgtc 114  Q
    ||||||||  |||||| ||||||||||  ||||||||||||||||||||||| |||  |||| |||||||||||||||||||||||||| |||  ||||     
T  30536046 tcatactcacattatatttttactttc--tctctattactttgatatttgtgccaa--catacttttctttgtaaaaatgtggttgtccgtttagttgtt 30536141  T
Q  115 aagtaaattgatgttcaaataacattactc 144  Q
    ||| |||||||||||||||||||| |||||    
T  30536142 aagcaaattgatgttcaaataacactactc 30536171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 15 - 140
Target Start/End: Original strand, 30745041 - 30745166
Alignment:
Q  15 tcatactcgtattatacttttactttccctctctattactttgatatttgtgtcaatacataattttctttgtaaaaatgtggttgtccatttgattgtc 114  Q
    |||||||| ||||||| |||||||||  |||||||||  |||| | ||||||||||||||||||||||||||||| | | |||||||| || || |||||    
T  30745041 tcatactcatattataattttactttatctctctattgttttggtttttgtgtcaatacataattttctttgtaagagtatggttgtctatatggttgtc 30745140  T
Q  115 aagtaaattgatgttcaaataacatt 140  Q
    ||  ||||| ||||||||||||||||    
T  30745141 aatcaaattaatgttcaaataacatt 30745166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 15 - 140
Target Start/End: Original strand, 30766492 - 30766617
Alignment:
Q  15 tcatactcgtattatacttttactttccctctctattactttgatatttgtgtcaatacataattttctttgtaaaaatgtggttgtccatttgattgtc 114  Q
    |||||||| ||||||| |||||||||  |||||||||  |||| | ||||||||||||||||||||||||||||| | | |||||||| || || |||||    
T  30766492 tcatactcatattataattttactttatctctctattgttttggtttttgtgtcaatacataattttctttgtaagagtatggttgtctatatggttgtc 30766591  T
Q  115 aagtaaattgatgttcaaataacatt 140  Q
    ||  ||||| ||||||||||||||||    
T  30766592 aatcaaattaatgttcaaataacatt 30766617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 26 - 140
Target Start/End: Original strand, 29359809 - 29359923
Alignment:
Q  26 ttatacttttactttccctctctattactttgatatttgtgtcaatacataattttctttgtaaaaatgtggttgtccatttgattgtcaagtaaattga 125  Q
    ||||| |||||||||  ||||||||| ||||  | |||||||||| ||||| |||||||| ||||||| |||||||| || || |||||||  |||||||    
T  29359809 ttatatttttactttttctctctattgcttttgtttttgtgtcaacacatacttttctttataaaaatatggttgtcaatgtggttgtcaatcaaattga 29359908  T
Q  126 tgttcaaataacatt 140  Q
    |||||||||||||||    
T  29359909 tgttcaaataacatt 29359923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 15 - 140
Target Start/End: Original strand, 52437549 - 52437674
Alignment:
Q  15 tcatactcgtattatacttttactttccctctctattactttgatatttgtgtcaatacataattttctttgtaaaaatgtggttgtccatttgattgtc 114  Q
    ||||||||  |||||| |||||||||  || |||||| ||||||| || || ||||||||||||||| ||||||||||  ||||||||||| ||||||||    
T  52437549 tcatactcacattatatttttactttatctttctattgctttgattttcgtatcaatacataattttatttgtaaaaagatggttgtccatgtgattgtc 52437648  T
Q  115 aagtaaattgatgttcaaataacatt 140  Q
    ||  | |||||| || ||||||||||    
T  52437649 aatcacattgatatttaaataacatt 52437674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 25 - 140
Target Start/End: Complemental strand, 30519631 - 30519516
Alignment:
Q  25 attatacttttactttccctctctattactttgatatttgtgtcaatacataattttctttgtaaaaatgtggttgtccatttgattgtcaagtaaattg 124  Q
    |||||| |||||||||  |||| |||| ||||| | || |||| ||||||| ||||||||||||||||  ||||||||||| || |||||||  | ||||    
T  30519631 attatatttttactttatctctttattgctttggttttcgtgttaatacatgattttctttgtaaaaagatggttgtccatgtggttgtcaatcacattg 30519532  T
Q  125 atgttcaaataacatt 140  Q
    ||||||||||||||||    
T  30519531 atgttcaaataacatt 30519516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 24 - 138
Target Start/End: Complemental strand, 26501294 - 26501180
Alignment:
Q  24 tattatacttttactttccctctctattactttgatatttgtgtcaatacataattttctttgtaaaaatgtggttgtccatttgattgtcaagtaaatt 123  Q
    ||||||| ||||||||||  || ||||||||||| | | |||| ||||||| |  ||||||| |||||||||||||||| ||||| |||| | ||| |||    
T  26501294 tattataattttactttctttccctattactttggtttctgtgccaatacacacatttctttctaaaaatgtggttgtcaatttggttgtaacgtacatt 26501195  T
Q  124 gatgttcaaataaca 138  Q
    |||||||||||||||    
T  26501194 gatgttcaaataaca 26501180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 15 - 136
Target Start/End: Complemental strand, 49020420 - 49020301
Alignment:
Q  15 tcatactcgtattatacttttactttccctctctattactttgatatttgtgtcaatacataattttctttgtaaaaatgtggttgtccatttgattgtc 114  Q
    ||||||||  |||||| |||| |||||  ||||||||  |||| | |||||| ||||| ||| |||||||||||||||| |||||||| ||||| |||||    
T  49020420 tcatactcacattatattttttctttc--tctctattgttttggtttttgtgccaatatatatttttctttgtaaaaatatggttgtcaatttggttgtc 49020323  T
Q  115 aagtaaattgatgttcaaataa 136  Q
    ||  ||||||||||||||||||    
T  49020322 aaccaaattgatgttcaaataa 49020301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 48 - 141
Target Start/End: Complemental strand, 32831151 - 32831058
Alignment:
Q  48 tattactttgatatttgtgtcaatacataattttctttgtaaaaatgtggttgtccatttgattgtcaagtaaattgatgttcaaataacatta 141  Q
    |||||||||||| ||  ||||||| |||| |||||||||||||||  |||||||| ||||| |||||| | |||| |||||||||| |||||||    
T  32831151 tattactttgattttcatgtcaatccatacttttctttgtaaaaacatggttgtctatttggttgtcaggcaaatagatgttcaaacaacatta 32831058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 25 - 102
Target Start/End: Original strand, 50242375 - 50242452
Alignment:
Q  25 attatacttttactttccctctctattactttgatatttgtgtcaatacataattttctttgtaaaaatgtggttgtc 102  Q
    |||||| |||||||||| ||||||||||||||| | || ||| ||||||||| ||||||||||||| || ||||||||    
T  50242375 attataattttactttctctctctattactttggttttcgtgccaatacatacttttctttgtaaatatatggttgtc 50242452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 26 - 102
Target Start/End: Complemental strand, 23665731 - 23665655
Alignment:
Q  26 ttatacttttactttccctctctattactttgatatttgtgtcaatacataattttctttgtaaaaatgtggttgtc 102  Q
    ||||| |||||||||| ||||| ||| ||||| | |||||||||| ||||| |||||||||||||||| ||||||||    
T  23665731 ttatatttttactttctctctcaattgctttggtttttgtgtcaacacatacttttctttgtaaaaatatggttgtc 23665655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 15 - 102
Target Start/End: Complemental strand, 740972 - 740883
Alignment:
Q  15 tcatactcgtattatacttttactttccctctct--attactttgatatttgtgtcaatacataattttctttgtaaaaatgtggttgtc 102  Q
    ||||||||  |||||| |||||||||| ||||||  |||| |||| | ||||||| ||||||||||||||||||||||| | ||||||||    
T  740972 tcatactcacattatatttttactttctctctctctattattttggtttttgtgttaatacataattttctttgtaaaattatggttgtc 740883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 46 - 149
Target Start/End: Original strand, 1689475 - 1689578
Alignment:
Q  46 tctattactttgatatttgtgtcaatacataattttctttgtaaaaatgtggttgtccatttgattgtcaagtaaattgatgttcaaataacattactca 145  Q
    |||||||||||||| |||||||||| ||||| |||| ||| ||||||| |||||||| || |  ||||||   ||||  ||||||| |||| ||||||||    
T  1689475 tctattactttgatttttgtgtcaacacatacttttatttataaaaatatggttgtctatatagttgtcacacaaataaatgttcatataatattactca 1689574  T
Q  146 ttcg 149  Q
    ||||    
T  1689575 ttcg 1689578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 33 - 144
Target Start/End: Original strand, 11947868 - 11947979
Alignment:
Q  33 tttactttccctctctattactttgatatttgtgtcaatacataattttctttgtaaaaatgtggttgtccatttgattgtcaagtaaattgatgttcaa 132  Q
    ||||||||| || ||||||||||| || ||||||  || ||||  |||| ||||||||||| |||||||| ||||  ||||||   |||| ||||||||     
T  11947868 tttactttctctttctattactttaatttttgtgcaaacacatgcttttatttgtaaaaatatggttgtctatttagttgtcacacaaatagatgttcat 11947967  T
Q  133 ataacattactc 144  Q
    ||||||||||||    
T  11947968 ataacattactc 11947979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 15 - 102
Target Start/End: Complemental strand, 27533501 - 27533414
Alignment:
Q  15 tcatactcgtattatacttttactttccctctctattactttgatatttgtgtcaatacataattttctttgtaaaaatgtggttgtc 102  Q
    |||||||| ||||||  |||||||||| |||| ||||  |||||| ||| ||||||||| | ||||||||||||||| | ||||||||    
T  27533501 tcatactcatattatgtttttactttctctctttattgttttgatttttatgtcaatacctcattttctttgtaaaattttggttgtc 27533414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 61 - 103
Target Start/End: Original strand, 46100965 - 46101007
Alignment:
Q  61 tttgtgtcaatacataattttctttgtaaaaatgtggttgtcc 103  Q
    |||||||||||||||||||||||||||||| || |||||||||    
T  46100965 tttgtgtcaatacataattttctttgtaaatatatggttgtcc 46101007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 13 - 91
Target Start/End: Complemental strand, 49065383 - 49065305
Alignment:
Q  13 tttcatactcgtattatacttttactttccctctctattactttgatatttgtgtcaatacataattttctttgtaaaa 91  Q
    ||||||||||  |||||  |||||||||| ||||||||| ||||| | |||||| |||||| | |||||||||||||||    
T  49065383 tttcatactcacattatgtttttactttctctctctattgctttggtttttgtgccaatacttcattttctttgtaaaa 49065305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 35 - 104
Target Start/End: Original strand, 4857985 - 4858053
Alignment:
Q  35 tactttccctctctattactttgatatttgtgtcaatacataattttctttgtaaaaatgtggttgtcca 104  Q
    ||||||| ||||||||| |||||||||||||| || ||| ||| ||||||||| | ||||||||||||||    
T  4857985 tactttctctctctattgctttgatatttgtgccactacttaaatttctttgt-ataatgtggttgtcca 4858053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 13 - 102
Target Start/End: Complemental strand, 5771263 - 5771174
Alignment:
Q  13 tttcatactcgtattatacttttactttccctctctattactttgatatttgtgtcaatacataattttctttgtaaaaatgtggttgtc 102  Q
    ||||||| || ||||||| |||||||||  || | |||||||||| | || || | |||||||||||||||||||||| || ||||||||    
T  5771263 tttcatattcatattatatttttactttatctatatattactttggttttcgttttaatacataattttctttgtaaagatatggttgtc 5771174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 15 - 92
Target Start/End: Original strand, 17652683 - 17652760
Alignment:
Q  15 tcatactcgtattatacttttactttccctctctattactttgatatttgtgtcaatacataattttctttgtaaaaa 92  Q
    ||||||||  |||||| || |||||||  |||||||||||||||| ||||||||||  |||| ||||||| |||||||    
T  17652683 tcatactcacattatatttatactttctttctctattactttgatttttgtgtcaacgcatacttttcttcgtaaaaa 17652760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 35 - 104
Target Start/End: Complemental strand, 40439836 - 40439768
Alignment:
Q  35 tactttccctctctattactttgatatttgtgtcaatacataattttctttgtaaaaatgtggttgtcca 104  Q
    ||||||| ||||||||| |||||||||||||| || ||| ||| ||||||||| | ||||||||||||||    
T  40439836 tactttctctctctattgctttgatatttgtgacactacctaaatttctttgt-ataatgtggttgtcca 40439768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 32 - 104
Target Start/End: Original strand, 23332341 - 23332412
Alignment:
Q  32 ttttactttccctctctattactttgatatttgtgtcaatacataattttctttgtaaaaatgtggttgtcca 104  Q
    |||||||||  ||||||||| ||||||||||||||| | ||| ||| ||||||||| | ||||||||||||||    
T  23332341 ttttacttttactctctattgctttgatatttgtgttactacctaaatttctttgt-ataatgtggttgtcca 23332412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 15 - 102
Target Start/End: Complemental strand, 36750499 - 36750414
Alignment:
Q  15 tcatactcgtattatacttttactttccctctctattactttgatatttgtgtcaatacataattttctttgtaaaaatgtggttgtc 102  Q
    ||||||||| |||||| |||||| |||  | |||||| ||||| | |||||| ||| ||||| |||||||||||||||| ||||||||    
T  36750499 tcatactcgcattatatttttaccttc--tatctattgctttgttttttgtgccaacacatacttttctttgtaaaaatatggttgtc 36750414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 32 - 91
Target Start/End: Complemental strand, 15083050 - 15082991
Alignment:
Q  32 ttttactttccctctctattactttgatatttgtgtcaatacataattttctttgtaaaa 91  Q
    |||||||||| ||||||||| ||||| | ||||||||||||| | |||| ||||||||||    
T  15083050 ttttactttctctctctattgctttggtttttgtgtcaatacttcatttcctttgtaaaa 15082991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 25 - 88
Target Start/End: Complemental strand, 17082749 - 17082686
Alignment:
Q  25 attatacttttactttccctctctattactttgatatttgtgtcaatacataattttctttgta 88  Q
    ||||| ||| || |||| |||||||||||||||||||||||| || ||| ||| ||||||||||    
T  17082749 attattcttctattttctctctctattactttgatatttgtgccactacctaaatttctttgta 17082686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 11 - 102
Target Start/End: Original strand, 48261190 - 48261281
Alignment:
Q  11 tttttcatactcgtattatacttttactttccctctctattactttgatatttgtgtcaatacataattttctttgtaaaaatgtggttgtc 102  Q
    ||||||||||||  |||||  |||||||||| ||||||||| ||||| | |||||| |||||| |  ||| |||||||||||| || |||||    
T  48261190 tttttcatactcacattatgtttttactttctctctctattgctttggtttttgtgccaatacctcttttcctttgtaaaaatatgattgtc 48261281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 15 - 102
Target Start/End: Complemental strand, 50775173 - 50775086
Alignment:
Q  15 tcatactcgtattatacttttactttccctctctattactttgatatttgtgtcaatacataattttctttgtaaaaatgtggttgtc 102  Q
    ||||||||  |||||  |||||||||  ||||||||| ||||| | |||||||||| ||||  |||||||||||||| | ||||||||    
T  50775173 tcatactcacattatgtttttactttatctctctattgctttggtttttgtgtcaacacatctttttctttgtaaaattatggttgtc 50775086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 32 - 103
Target Start/End: Complemental strand, 51571346 - 51571275
Alignment:
Q  32 ttttactttccctctctattactttgatatttgtgtcaatacataattttctttgtaaaaatgtggttgtcc 103  Q
    |||||||||| || |||||| ||||| | ||||||||||||| |  |||||||||||||| | |||||||||    
T  51571346 ttttactttctctttctattgctttggtttttgtgtcaatacctctttttctttgtaaaattatggttgtcc 51571275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 91
Target Start/End: Original strand, 25672394 - 25672472
Alignment:
Q  13 tttcatactcgtattatacttttactttccctctctattactttgatatttgtgtcaatacataattttctttgtaaaa 91  Q
    |||||||||  ||||||  ||||| |||| || |||||||||||  | ||||||||||||| | |||||||||||||||    
T  25672394 tttcatacttatattatgtttttattttctctttctattactttagtttttgtgtcaatactttattttctttgtaaaa 25672472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 90
Target Start/End: Complemental strand, 44517945 - 44517903
Alignment:
Q  48 tattactttgatatttgtgtcaatacataattttctttgtaaa 90  Q
    ||||| |||||| |||||||||||||||| |||||||||||||    
T  44517945 tattattttgatttttgtgtcaatacatatttttctttgtaaa 44517903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 15 - 88
Target Start/End: Complemental strand, 7919078 - 7919005
Alignment:
Q  15 tcatactcgtattatacttttactttccctctctattactttgatatttgtgtcaatacataattttctttgta 88  Q
    |||||||| |||| | ||| ||||||  ||||||||||||||||| |||||| || ||| ||| ||||||||||    
T  7919078 tcatactcatattgtccttctactttatctctctattactttgatttttgtgccactacctaaatttctttgta 7919005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 26 - 91
Target Start/End: Original strand, 50149011 - 50149076
Alignment:
Q  26 ttatacttttactttccctctctattactttgatatttgtgtcaatacataattttctttgtaaaa 91  Q
    ||||| ||||||||||  |||||||| ||||| | |||||||||||  || |||||||||||||||    
T  50149011 ttatatttttactttctttctctattgctttggtttttgtgtcaatcaatcattttctttgtaaaa 50149076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 32 - 92
Target Start/End: Original strand, 8846045 - 8846105
Alignment:
Q  32 ttttactttccctctctattactttgatatttgtgtcaatacataattttctttgtaaaaa 92  Q
    |||||||||  || |||||| ||||| | |||||||||||||||  |||||||||||||||    
T  8846045 ttttactttttctttctattgctttggtttttgtgtcaatacatctttttctttgtaaaaa 8846105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 58 - 90
Target Start/End: Original strand, 28769163 - 28769195
Alignment:
Q  58 atatttgtgtcaatacataattttctttgtaaa 90  Q
    |||||||||||||||||| ||||||||||||||    
T  28769163 atatttgtgtcaatacatcattttctttgtaaa 28769195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 102
Target Start/End: Original strand, 29359693 - 29359778
Alignment:
Q  15 tcatactcgtattatacttttactttccctctctattactttgatatttgtgtcaatacataattttctttgtaaaaatgtggttgtc 102  Q
    ||||||||  |||||  ||||||||||  |||||||| ||||| | |||||| || ||||| ||||||||||||||| | ||||||||    
T  29359693 tcatactcacattatctttttactttc--tctctattgctttggtttttgtgccattacatcattttctttgtaaaattttggttgtc 29359778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #43
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 83
Target Start/End: Complemental strand, 31847200 - 31847132
Alignment:
Q  15 tcatactcgtattatacttttactttccctctctattactttgatatttgtgtcaatacataattttct 83  Q
    ||||||||| |||||| ||| ||||||||||| ||||  |||| | || ||||||||||||| ||||||    
T  31847200 tcatactcgcattatattttaactttccctctttattgttttggttttcgtgtcaatacatatttttct 31847132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053 (Bit Score: 87; Significance: 9e-42; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 17 - 147
Target Start/End: Original strand, 12554 - 12684
Alignment:
Q  17 atactcgtattatacttttactttccctctctattactttgatatttgtgtcaatacataattttctttgtaaaaatgtggttgtccatttgattgtcaa 116  Q
    |||||| ||||||| |||||||||| |||||||||||||||||||||||| ||||||||| ||||||| ||||||||||||||||||||||  |||||||    
T  12554 atactcatattatatttttactttctctctctattactttgatatttgtgccaatacatacttttcttggtaaaaatgtggttgtccatttagttgtcaa 12653  T
Q  117 gtaaattgatgttcaaataacattactcatt 147  Q
    | |||||||||||||||||||  ||||||||    
T  12654 gcaaattgatgttcaaataactctactcatt 12684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 85; Significance: 1e-40; HSPs: 49)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 32 - 144
Target Start/End: Complemental strand, 37894241 - 37894129
Alignment:
Q  32 ttttactttccctctctattactttgatatttgtgtcaatacataattttctttgtaaaaatgtggttgtccatttgattgtcaagtaaattgatgttca 131  Q
    |||||||||| |||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||  |||||||| |||||||||||||    
T  37894241 ttttactttctctctctattactttgatatttgtgtcaatacatacttttcttggtaaaaatgtggttgtccatttagttgtcaagcaaattgatgttca 37894142  T
Q  132 aataacattactc 144  Q
    ||||||| |||||    
T  37894141 aataacactactc 37894129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 25 - 144
Target Start/End: Complemental strand, 49761193 - 49761074
Alignment:
Q  25 attatacttttactttccctctctattactttgatatttgtgtcaatacataattttctttgtaaaaatgtggttgtccatttgattgtcaagtaaattg 124  Q
    |||||| |||||||||| || ||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||  |||||||| ||||||    
T  49761193 attatatttttactttctctttctattactttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtccatttagttgtcaagcaaattg 49761094  T
Q  125 atgttcaaataacattactc 144  Q
    ||||| |||||||| |||||    
T  49761093 atgttgaaataacactactc 49761074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 15 - 143
Target Start/End: Complemental strand, 48944727 - 48944599
Alignment:
Q  15 tcatactcgtattatacttttactttccctctctattactttgatatttgtgtcaatacataattttctttgtaaaaatgtggttgtccatttgattgtc 114  Q
    |||||||| ||||| | |||||||||| |||||||||||||||||||||||| ||||||||| |||||||||||||||| || |||| |||||  |||||    
T  48944727 tcatactcatattacatttttactttctctctctattactttgatatttgtgccaatacatatttttctttgtaaaaatatgattgttcatttagttgtc 48944628  T
Q  115 aagtaaattgatgttcaaataacattact 143  Q
    ||| |||||||||||||||||||| ||||    
T  48944627 aagcaaattgatgttcaaataacactact 48944599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 25 - 144
Target Start/End: Original strand, 52100325 - 52100444
Alignment:
Q  25 attatacttttactttccctctctattactttgatatttgtgtcaatacataattttctttgtaaaaatgtggttgtccatttgattgtcaagtaaattg 124  Q
    |||||| |||||||||| || |||||||||||||||||| ||  |||||||| |||||||||||||||| || |||||||||| ||||||||| ||||||    
T  52100325 attatatttttactttctctttctattactttgatatttatgctaatacatatttttctttgtaaaaatatgattgtccatttaattgtcaagcaaattg 52100424  T
Q  125 atgttcaaataacattactc 144  Q
    |||||||||||||| |||||    
T  52100425 atgttcaaataacactactc 52100444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 15 - 144
Target Start/End: Original strand, 33796321 - 33796450
Alignment:
Q  15 tcatactcgtattatacttttactttccctctctattactttgatatttgtgtcaatacataattttctttgtaaaaatgtggttgtccatttgattgtc 114  Q
    |||||||| ||||||| |||||||||  ||| ||||||||||||| |||||| ||| ||||| |||||||| ||||||| |||||||| || ||||||||    
T  33796321 tcatactcatattatatttttactttttctccctattactttgatttttgtgccaacacatacttttctttataaaaatatggttgtcaatgtgattgtc 33796420  T
Q  115 aagtaaattgatgttcaaataacattactc 144  Q
    ||  |||||||| |||||||||||||||||    
T  33796421 aaccaaattgattttcaaataacattactc 33796450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 25 - 144
Target Start/End: Complemental strand, 45186558 - 45186439
Alignment:
Q  25 attatacttttactttccctctctattactttgatatttgtgtcaatacataattttctttgtaaaaatgtggttgtccatttgattgtcaagtaaattg 124  Q
    |||||| |||||||||| ||||||||||||||||| ||  |||||||||||| ||||| |||||||| | |||||||||||||| |||||||  ||||||    
T  45186558 attatatttttactttctctctctattactttgattttcttgtcaatacatacttttcgttgtaaaagtatggttgtccatttggttgtcaaacaaattg 45186459  T
Q  125 atgttcaaataacattactc 144  Q
    |||||| ||||||| |||||    
T  45186458 atgttcgaataacactactc 45186439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 15 - 140
Target Start/End: Complemental strand, 36756067 - 36755942
Alignment:
Q  15 tcatactcgtattatacttttactttccctctctattactttgatatttgtgtcaatacataattttctttgtaaaaatgtggttgtccatttgattgtc 114  Q
    ||||||||| |||||| ||||| |||| ||||||||| ||||||| |||||| ||| | ||| |||||||||||||||| |||||||| || ||||||||    
T  36756067 tcatactcgcattatatttttattttctctctctattgctttgatttttgtgccaacatatacttttctttgtaaaaatatggttgtcaatgtgattgtc 36755968  T
Q  115 aagtaaattgatgttcaaataacatt 140  Q
    ||  |||||||| |||||||||||||    
T  36755967 aatcaaattgatattcaaataacatt 36755942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 32 - 147
Target Start/End: Original strand, 16479704 - 16479819
Alignment:
Q  32 ttttactttccctctctattactttgatatttgtgtcaatacataattttctttgtaaaaatgtggttgtccatttgattgtcaagtaaattgatgttca 131  Q
    ||||| |||| ||||||||||||||||| || ||| ||||||||| |||||||||||||||   ||||||| ||||| |||||||| |||| ||||||||    
T  16479704 ttttattttctctctctattactttgattttcgtgccaatacatatttttctttgtaaaaacaaggttgtctatttggttgtcaagcaaatagatgttca 16479803  T
Q  132 aataacattactcatt 147  Q
    ||||||| ||||||||    
T  16479804 aataacactactcatt 16479819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 24 - 144
Target Start/End: Complemental strand, 54099364 - 54099244
Alignment:
Q  24 tattatacttttactttccctctctattactttgatatttgtgtcaatacataattttctttgtaaaaatgtggttgtccatttgattgtcaagtaaatt 123  Q
    ||||||| |||||||||| ||||||||| ||||||| ||| || ||| | ||| |||||||||||||||| || ||||| || | ||||||||  |||||    
T  54099364 tattatatttttactttctctctctattgctttgatttttatgccaacatatacttttctttgtaaaaatatgattgtcaatgtaattgtcaaccaaatt 54099265  T
Q  124 gatgttcaaataacattactc 144  Q
    |||||||||||||||||||||    
T  54099264 gatgttcaaataacattactc 54099244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 15 - 138
Target Start/End: Original strand, 52485527 - 52485650
Alignment:
Q  15 tcatactcgtattatacttttactttccctctctattactttgatatttgtgtcaatacataattttctttgtaaaaatgtggttgtccatttgattgtc 114  Q
    ||||||||  |||||| |||||||||  ||||||||| ||||| | || ||| ||||||||| |||||||||||||||| |||||||||||| | |||||    
T  52485527 tcatactcacattatatttttactttatctctctattgctttggttttcgtgccaatacatacttttctttgtaaaaatatggttgtccattaggttgtc 52485626  T
Q  115 aagtaaattgatgttcaaataaca 138  Q
    ||  |||| |||||||||||||||    
T  52485627 aaacaaatagatgttcaaataaca 52485650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 15 - 140
Target Start/End: Complemental strand, 26452739 - 26452614
Alignment:
Q  15 tcatactcgtattatacttttactttccctctctattactttgatatttgtgtcaatacataattttctttgtaaaaatgtggttgtccatttgattgtc 114  Q
    ||||||||  |||||| |||||||||| ||||||||| ||||||| |   ||||||||||| ||||||||||||||||  || |||||||| | ||||||    
T  26452739 tcatactcacattatatttttactttctctctctattgctttgatttccctgtcaatacatgattttctttgtaaaaagatgattgtccatataattgtc 26452640  T
Q  115 aagtaaattgatgttcaaataacatt 140  Q
    ||  | |||||| |||||||||||||    
T  26452639 aatcacattgatattcaaataacatt 26452614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 18 - 107
Target Start/End: Complemental strand, 45657783 - 45657694
Alignment:
Q  18 tactcgtattatacttttactttccctctctattactttgatatttgtgtcaatacataattttctttgtaaaaatgtggttgtccattt 107  Q
    ||||| ||||||| |||||||||  |||||||||||||||||||||||| ||||||||| |||||||| || ||||||| ||||| ||||    
T  45657783 tactcatattatatttttactttttctctctattactttgatatttgtgccaatacatacttttctttatataaatgtgattgtcaattt 45657694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 25 - 129
Target Start/End: Original strand, 26550302 - 26550406
Alignment:
Q  25 attatacttttactttccctctctattactttgatatttgtgtcaatacataattttctttgtaaaaatgtggttgtccatttgattgtcaagtaaattg 124  Q
    |||||| |||||||||| |||||||||||||| || ||||||  | |||| | ||||||||||||||||||| ||||||||||| ||||||   ||||||    
T  26550302 attataattttactttctctctctattactttaatttttgtgctagtacacacttttctttgtaaaaatgtgattgtccatttggttgtcacacaaattg 26550401  T
Q  125 atgtt 129  Q
    |||||    
T  26550402 atgtt 26550406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 32 - 144
Target Start/End: Original strand, 34592136 - 34592248
Alignment:
Q  32 ttttactttccctctctattactttgatatttgtgtcaatacataattttctttgtaaaaatgtggttgtccatttgattgtcaagtaaattgatgttca 131  Q
    ||||| |||| |||| |||||||||||| || ||||||||||||| |||||||||||||||    |||||| |||||| ||||||  |||| ||||||||    
T  34592136 ttttattttctctctttattactttgattttcgtgtcaatacatacttttctttgtaaaaacaatgttgtctatttgactgtcaaacaaatagatgttca 34592235  T
Q  132 aataacattactc 144  Q
    ||||||| |||||    
T  34592236 aataacactactc 34592248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 25 - 140
Target Start/End: Original strand, 1436881 - 1436996
Alignment:
Q  25 attatacttttactttccctctctattactttgatatttgtgtcaatacataattttctttgtaaaaatgtggttgtccatttgattgtcaagtaaattg 124  Q
    |||||| |||||||||| |||||||||  |||  | |||||| ||| ||||| |||||||||||||||| |||||||| || || |||| ||  ||||||    
T  1436881 attatatttttactttctctctctattgttttattttttgtgccaacacatacttttctttgtaaaaatatggttgtcaatgtggttgtaaaccaaattg 1436980  T
Q  125 atgttcaaataacatt 140  Q
    ||||||||||||||||    
T  1436981 atgttcaaataacatt 1436996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 25 - 144
Target Start/End: Original strand, 29780962 - 29781081
Alignment:
Q  25 attatacttttactttccctctctattactttgatatttgtgtcaatacataattttctttgtaaaaatgtggttgtccatttgattgtcaagtaaattg 124  Q
    |||||| |||||||||   ||||||||  |||||| || ||| ||||||| | |||||||| ||||||| || |||||||| ||||||||||  ||||||    
T  29780962 attatatttttactttttttctctattgttttgattttcgtgccaatacaaacttttctttataaaaatatgattgtccatatgattgtcaatcaaattg 29781061  T
Q  125 atgttcaaataacattactc 144  Q
    |||| |||||||||||||||    
T  29781062 atgtccaaataacattactc 29781081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 26 - 140
Target Start/End: Original strand, 51698924 - 51699038
Alignment:
Q  26 ttatacttttactttccctctctattactttgatatttgtgtcaatacataattttctttgtaaaaatgtggttgtccatttgattgtcaagtaaattga 125  Q
    ||||| ||||| |||| |||||||||  |||| | |||||| ||| ||||| |||||||||||| ||| |||||||| || || |||||||  |||||||    
T  51698924 ttatatttttattttctctctctattgatttggtttttgtgccaacacatacttttctttgtaagaatatggttgtcaatgtggttgtcaaccaaattga 51699023  T
Q  126 tgttcaaataacatt 140  Q
    |||||||||||||||    
T  51699024 tgttcaaataacatt 51699038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 13 - 138
Target Start/End: Complemental strand, 23868997 - 23868872
Alignment:
Q  13 tttcatactcgtattatacttttactttccctctctattactttgatatttgtgtcaatacataattttctttgtaaaaatgtggttgtccatttgattg 112  Q
    ||||||||||  |||||  |||||| |||  | ||||||| |||||| |||||| ||||||||  ||||| |||||||||| || ||||| ||||| |||    
T  23868997 tttcatactcacattatttttttacgttctttttctattattttgatttttgtgccaatacatttttttccttgtaaaaatatgattgtctatttggttg 23868898  T
Q  113 tcaagtaaattgatgttcaaataaca 138  Q
    ||||| |||| |||||||||||||||    
T  23868897 tcaagcaaatagatgttcaaataaca 23868872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 32 - 144
Target Start/End: Original strand, 26772440 - 26772553
Alignment:
Q  32 ttttactttccctctctattactttgatatttgtgtcaatacataattttc-tttgtaaaaatgtggttgtccatttgattgtcaagtaaattgatgttc 130  Q
    ||||| |||| |||||||||| |||||| || ||||||||||||| ||||| |||||||||||  ||||||| |||||  ||||||  |||| |||||||    
T  26772440 ttttattttctctctctattattttgattttcgtgtcaatacatagttttcttttgtaaaaataaggttgtctatttggatgtcaaacaaatagatgttc 26772539  T
Q  131 aaataacattactc 144  Q
    |||||||| |||||    
T  26772540 aaataacactactc 26772553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 25 - 102
Target Start/End: Original strand, 52714798 - 52714875
Alignment:
Q  25 attatacttttactttccctctctattactttgatatttgtgtcaatacataattttctttgtaaaaatgtggttgtc 102  Q
    |||||| |||||||||| ||||||||| ||||||| |||||| ||| ||||| |||||||||||||||| ||||||||    
T  52714798 attatatttttactttctctctctattgctttgatttttgtgccaacacatacttttctttgtaaaaatatggttgtc 52714875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 32 - 102
Target Start/End: Complemental strand, 35377081 - 35377011
Alignment:
Q  32 ttttactttccctctctattactttgatatttgtgtcaatacataattttctttgtaaaaatgtggttgtc 102  Q
    ||||||||||  |||||||| ||||||| |||||| |||||||| ||||||||||||||| | ||||||||    
T  35377081 ttttactttctttctctattgctttgatttttgtgccaatacatcattttctttgtaaaattttggttgtc 35377011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 15 - 93
Target Start/End: Complemental strand, 52963332 - 52963254
Alignment:
Q  15 tcatactcgtattatacttttactttccctctctattactttgatatttgtgtcaatacataattttctttgtaaaaat 93  Q
    ||||| || ||||||| ||||||||||  | |||||||||||  | |||||||||||||||| ||||||||||||||||    
T  52963332 tcatattcatattatatttttactttctttttctattactttagtttttgtgtcaatacatatttttctttgtaaaaat 52963254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 13 - 93
Target Start/End: Complemental strand, 658824 - 658744
Alignment:
Q  13 tttcatactcgtattatacttttactttccctctctattactttgatatttgtgtcaatacataattttctttgtaaaaat 93  Q
    ||||||| || ||||||| |||||||||   ||| || ||||||| | || ||||||||||||||||||||||||||||||    
T  658824 tttcatattcatattataattttactttatttctttaatactttggttttcgtgtcaatacataattttctttgtaaaaat 658744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 32 - 91
Target Start/End: Original strand, 5114149 - 5114208
Alignment:
Q  32 ttttactttccctctctattactttgatatttgtgtcaatacataattttctttgtaaaa 91  Q
    |||||||||| ||||||||| ||||||| ||||||||| ||| | |||||||||||||||    
T  5114149 ttttactttctctctctattgctttgatttttgtgtcactacctcattttctttgtaaaa 5114208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 13 - 91
Target Start/End: Complemental strand, 11630767 - 11630691
Alignment:
Q  13 tttcatactcgtattatacttttactttccctctctattactttgatatttgtgtcaatacataattttctttgtaaaa 91  Q
    |||||||||| ||||||| ||||||||||  |||||||||||||| | ||| | ||||||| | |||||||||||||||    
T  11630767 tttcatactcttattatatttttactttc--tctctattactttggtttttatatcaatacttcattttctttgtaaaa 11630691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 27 - 138
Target Start/End: Complemental strand, 12762694 - 12762583
Alignment:
Q  27 tatacttttactttccctctctattactttgatatttgtgtcaatacataattttctttgtaaaaatgtggttgtccatttgattgtcaagtaaattgat 126  Q
    |||| ||||| |||| |||| |||||||||||| ||||||||||||  || |||||||||||||  | |||||||||  |  ||||||| ||||||   |    
T  12762694 tatatttttattttctctctttattactttgatttttgtgtcaataactatttttctttgtaaatttatggttgtcccataaattgtcatgtaaatgatt 12762595  T
Q  127 gttcaaataaca 138  Q
    ||||||||||||    
T  12762594 gttcaaataaca 12762583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 15 - 102
Target Start/End: Complemental strand, 33791787 - 33791700
Alignment:
Q  15 tcatactcgtattatacttttactttccctctctattactttgatatttgtgtcaatacataattttctttgtaaaaatgtggttgtc 102  Q
    ||||||||  |||||  ||||||||||||||||||||  |||||  ||||||||||||| | ||||||||||| ||| | ||||||||    
T  33791787 tcatactcacattatgtttttactttccctctctattgttttgacttttgtgtcaatacctcattttctttgtgaaattttggttgtc 33791700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 32 - 91
Target Start/End: Original strand, 41309188 - 41309247
Alignment:
Q  32 ttttactttccctctctattactttgatatttgtgtcaatacataattttctttgtaaaa 91  Q
    |||||||||| ||||||||| ||||||| ||||||||| ||| | |||||||||||||||    
T  41309188 ttttactttctctctctattgctttgatttttgtgtcactacctcattttctttgtaaaa 41309247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 15 - 102
Target Start/End: Original strand, 49021766 - 49021853
Alignment:
Q  15 tcatactcgtattatacttttactttccctctctattactttgatatttgtgtcaatacataattttctttgtaaaaatgtggttgtc 102  Q
    ||||||||  |||||| ||||| |||  ||||| ||| ||||||| |||||| ||| ||||| |||||||||||||||| ||||||||    
T  49021766 tcatactcacattatatttttattttgtctctcaattgctttgatttttgtgccaacacatacttttctttgtaaaaatatggttgtc 49021853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 15 - 73
Target Start/End: Original strand, 50314679 - 50314737
Alignment:
Q  15 tcatactcgtattatacttttactttccctctctattactttgatatttgtgtcaatac 73  Q
    ||||||||  |||||  |||||||||| ||||||||||||||||| |||||||||||||    
T  50314679 tcatactcacattatgtttttactttctctctctattactttgatttttgtgtcaatac 50314737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 32 - 90
Target Start/End: Complemental strand, 55361233 - 55361175
Alignment:
Q  32 ttttactttccctctctattactttgatatttgtgtcaatacataattttctttgtaaa 90  Q
    |||||||||| ||||||||| ||||| | ||||||||||||| | ||||||||||||||    
T  55361233 ttttactttctctctctattgctttggtttttgtgtcaatacttcattttctttgtaaa 55361175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 43 - 136
Target Start/End: Original strand, 36907123 - 36907216
Alignment:
Q  43 ctctctattactttgatatttgtgtcaatacataattttctttgtaaaaatgtggttgtccatttgattgtcaagtaaattgatgttcaaataa 136  Q
    ||||||||||||||| | || |||  ||||||||  ||||||||||||||| |||||||||||| | |||  ||  |||| |||||||||||||    
T  36907123 ctctctattactttgtttttcgtgcaaatacatatatttctttgtaaaaatatggttgtccattaggttgctaaacaaatagatgttcaaataa 36907216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 25 - 138
Target Start/End: Original strand, 48287736 - 48287849
Alignment:
Q  25 attatacttttactttccctctctattactttgatatttgtgtcaatacataattttctttgtaaaaatgtggttgtccatttgattgtcaagtaaattg 124  Q
    |||||| ||| | |||| ||||||||||||||||| || |||  |||||||| |||||||||||||||| | ||| ||   | | ||||||| ||||| |    
T  48287736 attatattttaattttctctctctattactttgattttcgtgctaatacatatttttctttgtaaaaatatcgttatcgcatagcttgtcaaataaatag 48287835  T
Q  125 atgttcaaataaca 138  Q
    | ||||||||||||    
T  48287836 acgttcaaataaca 48287849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 32 - 144
Target Start/End: Complemental strand, 13348134 - 13348022
Alignment:
Q  32 ttttactttccctctctattactttgatatttgtgtcaatacataattttctttgtaaaaatgtggttgtccatttgattgtcaagtaaattgatgttca 131  Q
    |||||| ||| ||||||||| ||||| | ||||| ||||||| | ||||||||||||||| | |||||||||      ||||||  ||||| ||||||||    
T  13348134 ttttaccttctctctctattgctttggtttttgtatcaatacctcattttctttgtaaaattttggttgtcccaaaagttgtcatataaatggatgttca 13348035  T
Q  132 aataacattactc 144  Q
    |||||||| ||||    
T  13348034 aataacataactc 13348022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 15 - 91
Target Start/End: Complemental strand, 44813464 - 44813388
Alignment:
Q  15 tcatactcgtattatacttttactttccctctctattactttgatatttgtgtcaatacataattttctttgtaaaa 91  Q
    ||||||||  |||||| |||||||||  ||||||||| ||||| | || ||||||||||||  ||||||||||||||    
T  44813464 tcatactcacattatatttttactttatctctctattgctttggttttcgtgtcaatacatggttttctttgtaaaa 44813388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 102
Target Start/End: Complemental strand, 44962204 - 44962115
Alignment:
Q  11 tttttcatactcgtattatacttttactttccctctctattactttgatatttgtgtcaatacataattttctttgtaaaaatgtggttgtc 102  Q
    |||||||||||  ||||||| ||||| ||||  | |||||||||||||| || || |||||||||| |||| ||||||||||  ||||||||    
T  44962204 tttttcatacttatattatatttttattttc--tatctattactttgattttcgtatcaatacatatttttttttgtaaaaacatggttgtc 44962115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 73
Target Start/End: Complemental strand, 6178442 - 6178384
Alignment:
Q  15 tcatactcgtattatacttttactttccctctctattactttgatatttgtgtcaatac 73  Q
    ||||||||  |||||  |||||||||| ||||||||| ||||||| |||||||||||||    
T  6178442 tcatactcacattatgtttttactttctctctctattgctttgatttttgtgtcaatac 6178384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 88
Target Start/End: Complemental strand, 8502888 - 8502834
Alignment:
Q  34 ttactttccctctctattactttgatatttgtgtcaatacataattttctttgta 88  Q
    |||||||| ||||||||| ||||||| ||| | ||||||||||| ||||||||||    
T  8502888 ttactttctctctctattgctttgatttttatctcaatacataaatttctttgta 8502834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 102
Target Start/End: Complemental strand, 29917011 - 29916957
Alignment:
Q  48 tattactttgatatttgtgtcaatacataattttctttgtaaaaatgtggttgtc 102  Q
    |||| ||||||| |||||||||| ||||| ||| |||||||||||| ||||||||    
T  29917011 tattgctttgatttttgtgtcaacacatactttcctttgtaaaaatatggttgtc 29916957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 102
Target Start/End: Complemental strand, 29966164 - 29966110
Alignment:
Q  48 tattactttgatatttgtgtcaatacataattttctttgtaaaaatgtggttgtc 102  Q
    |||| ||||||| |||||||||| ||||| ||| |||||||||||| ||||||||    
T  29966164 tattgctttgatttttgtgtcaacacatactttcctttgtaaaaatatggttgtc 29966110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 101
Target Start/End: Complemental strand, 45711456 - 45711370
Alignment:
Q  15 tcatactcgtattatacttttactttccctctctattactttgatatttgtgtcaatacataattttctttgtaaaaatgtggttgt 101  Q
    ||||||||  |||||  |||||||||| |||||||||  |||| |  |||||||||||| | ||||||||||||||| | |||||||    
T  45711456 tcatactcacattatctttttactttctctctctattgttttggttattgtgtcaatacttcattttctttgtaaaattttggttgt 45711370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 91
Target Start/End: Original strand, 51982151 - 51982229
Alignment:
Q  13 tttcatactcgtattatacttttactttccctctctattactttgatatttgtgtcaatacataattttctttgtaaaa 91  Q
    |||||||||  ||||||  |||||||||| ||||||||| ||||  | ||||||||||||| | ||||||||| |||||    
T  51982151 tttcatacttatattatgtttttactttctctctctattgctttagtttttgtgtcaataccttattttctttataaaa 51982229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 65 - 138
Target Start/End: Original strand, 9653371 - 9653444
Alignment:
Q  65 tgtcaatacataattttctttgtaaaaatgtggttgtccatttgattgtcaagtaaattgatgttcaaataaca 138  Q
    ||||||||||||  ||||||||||||||| | ||||||   ||| | ||||| ||||| |||||||||||||||    
T  9653371 tgtcaatacatatctttctttgtaaaaatatagttgtcatattgttcgtcaaataaatagatgttcaaataaca 9653444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #44
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 15 - 88
Target Start/End: Complemental strand, 41443207 - 41443134
Alignment:
Q  15 tcatactcgtattatacttttactttccctctctattactttgatatttgtgtcaatacataattttctttgta 88  Q
    ||||||||  ||||| ||||||||||| |||||||||  |||||| ||||||  ||||| ||| ||||||||||    
T  41443207 tcatactcacattattcttttactttctctctctattgttttgatttttgtgcaaatacctaaatttctttgta 41443134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #45
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 61 - 101
Target Start/End: Original strand, 5527444 - 5527484
Alignment:
Q  61 tttgtgtcaatacataattttctttgtaaaaatgtggttgt 101  Q
    ||||||||||||||||  ||||||||||||||| |||||||    
T  5527444 tttgtgtcaatacatatatttctttgtaaaaatatggttgt 5527484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #46
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 35 - 91
Target Start/End: Complemental strand, 32145982 - 32145926
Alignment:
Q  35 tactttccctctctattactttgatatttgtgtcaatacataattttctttgtaaaa 91  Q
    ||||||| |||||||||  |||||| ||||||||| ||| ||| |||||||||||||    
T  32145982 tactttctctctctattgttttgatttttgtgtcactacctaaatttctttgtaaaa 32145926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #47
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 91
Target Start/End: Complemental strand, 42358655 - 42358579
Alignment:
Q  15 tcatactcgtattatacttttactttccctctctattactttgatatttgtgtcaatacataattttctttgtaaaa 91  Q
    ||||||||  |||||  |||||||||  ||||||||| ||||||| ||||||||||||| | |||| ||||| ||||    
T  42358655 tcatactcacattatctttttactttatctctctattgctttgatttttgtgtcaatacctcatttcctttgcaaaa 42358579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #48
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 91
Target Start/End: Complemental strand, 50876379 - 50876303
Alignment:
Q  15 tcatactcgtattatacttttactttccctctctattactttgatatttgtgtcaatacataattttctttgtaaaa 91  Q
    |||||||| ||||||  ||||| |||| || |||||| ||||||| ||||| ||||||| |  ||||||||||||||    
T  50876379 tcatactcatattatgtttttattttctctttctattgctttgatttttgtatcaatacctctttttctttgtaaaa 50876303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #49
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 31 - 91
Target Start/End: Complemental strand, 55151718 - 55151658
Alignment:
Q  31 cttttactttccctctctattactttgatatttgtgtcaatacataattttctttgtaaaa 91  Q
    ||||||||||| ||||||| | ||||| | ||||||||||||| | |||| ||||||||||    
T  55151718 cttttactttctctctctagtgctttggtttttgtgtcaatacttcatttcctttgtaaaa 55151658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 84; Significance: 6e-40; HSPs: 37)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 15 - 146
Target Start/End: Complemental strand, 25830262 - 25830131
Alignment:
Q  15 tcatactcgtattatacttttactttccctctctattactttgatatttgtgtcaatacataattttctttgtaaaaatgtggttgtccatttgattgtc 114  Q
    ||||||||  |||||| |||||||||| |||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||  ||||     
T  25830262 tcatactcacattatatttttactttctctctctattactttgatatttgtgccaatacatacttttctttgtaaaaatgtggttgtccatttagttgtt 25830163  T
Q  115 aagtaaattgatgttcaaataacattactcat 146  Q
    ||  |||||||||||||||||||| |||||||    
T  25830162 aaacaaattgatgttcaaataacactactcat 25830131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 15 - 144
Target Start/End: Original strand, 33539460 - 33539589
Alignment:
Q  15 tcatactcgtattatacttttactttccctctctattactttgatatttgtgtcaatacataattttctttgtaaaaatgtggttgtccatttgattgtc 114  Q
    ||||||||  |||||| |||||||| | |||||||||||||||||||||||| ||||||||| ||||||||| ||||||||||||||||||||  |||||    
T  33539460 tcatactcacattatatttttacttactctctctattactttgatatttgtgccaatacatacttttctttgaaaaaatgtggttgtccatttagttgtc 33539559  T
Q  115 aagtaaattgatgttcaaataacattactc 144  Q
    ||| |||||||||||||||||||| |||||    
T  33539560 aagcaaattgatgttcaaataacactactc 33539589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 15 - 144
Target Start/End: Original strand, 43715929 - 43716058
Alignment:
Q  15 tcatactcgtattatacttttactttccctctctattactttgatatttgtgtcaatacataattttctttgtaaaaatgtggttgtccatttgattgtc 114  Q
    ||||||||  |||||| |||||||||| |||||||||||||||||||||||  ||||||||| ||||||| ||||||||||||||||||||||  |||||    
T  43715929 tcatactcacattatatttttactttctctctctattactttgatatttgtaccaatacatacttttcttggtaaaaatgtggttgtccatttagttgtc 43716028  T
Q  115 aagtaaattgatgttcaaataacattactc 144  Q
    ||| |||||||||||||||||||| |||||    
T  43716029 aagcaaattgatgttcaaataacactactc 43716058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 25 - 144
Target Start/End: Complemental strand, 67167 - 67048
Alignment:
Q  25 attatacttttactttccctctctattactttgatatttgtgtcaatacataattttctttgtaaaaatgtggttgtccatttgattgtcaagtaaattg 124  Q
    |||||| ||||||||   |||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| ||||| |||||||| |||||     
T  67167 attatatttttacttcttctctctattactttgatatttgtgccaatacatgattttctttgtaaaaatgtggttgtctatttggttgtcaagcaaatta 67068  T
Q  125 atgttcaaataacattactc 144  Q
    |||||||||||||| |||||    
T  67067 atgttcaaataacactactc 67048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 15 - 140
Target Start/End: Original strand, 6440136 - 6440261
Alignment:
Q  15 tcatactcgtattatacttttactttccctctctattactttgatatttgtgtcaatacataattttctttgtaaaaatgtggttgtccatttgattgtc 114  Q
    ||||||||  |||||| |||||||||| |||| | || ||||||| |||||||||||||||| |||||||||||||||| |||||||| ||||| |||||    
T  6440136 tcatactcacattatatttttactttctctctttcttgctttgatttttgtgtcaatacatacttttctttgtaaaaatatggttgtcaatttggttgtc 6440235  T
Q  115 aagtaaattgatgttcaaataacatt 140  Q
    ||  || |||||||||||||||||||    
T  6440236 aaccaagttgatgttcaaataacatt 6440261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 15 - 144
Target Start/End: Original strand, 12655977 - 12656106
Alignment:
Q  15 tcatactcgtattatacttttactttccctctctattactttgatatttgtgtcaatacataattttctttgtaaaaatgtggttgtccatttgattgtc 114  Q
    ||||| || ||||||| |||||||||| |||||||||||||| || |||||| |||| |||| |||||||||||||||  |||||||| ||||| |||||    
T  12655977 tcatattcatattatatttttactttctctctctattactttcatttttgtgccaatgcatacttttctttgtaaaaacatggttgtctatttggttgtc 12656076  T
Q  115 aagtaaattgatgttcaaataacattactc 144  Q
    ||| |||| ||||||||||||||| |||||    
T  12656077 aagcaaatagatgttcaaataacactactc 12656106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 15 - 143
Target Start/End: Complemental strand, 8671572 - 8671444
Alignment:
Q  15 tcatactcgtattatacttttactttccctctctattactttgatatttgtgtcaatacataattttctttgtaaaaatgtggttgtccatttgattgtc 114  Q
    ||||||||| |||||| |||||||||  ||||||||||||||||| ||||| |||||| ||  |||| ||||||||||| ||| |||||||||||||||     
T  8671572 tcatactcgcattatatttttactttatctctctattactttgatttttgtatcaatatatttttttttttgtaaaaatatggctgtccatttgattgtt 8671473  T
Q  115 aagtaaattgatgttcaaataacattact 143  Q
    ||  |||| ||||||||||||||||||||    
T  8671472 aaacaaatggatgttcaaataacattact 8671444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 15 - 146
Target Start/End: Original strand, 35067215 - 35067346
Alignment:
Q  15 tcatactcgtattatacttttactttccctctctattactttgatatttgtgtcaatacataattttctttgtaaaaatgtggttgtccatttgattgtc 114  Q
    ||||||||  |||||| |||||||||| ||||||||| ||||| | |||||| ||| ||||| |||||||||||||||| |||||||| || || |||||    
T  35067215 tcatactcacattatatttttactttctctctctattgctttggtttttgtgccaacacatacttttctttgtaaaaatatggttgtcaatgtggttgtc 35067314  T
Q  115 aagtaaattgatgttcaaataacattactcat 146  Q
    ||  |||||||||||||||||||||| |||||    
T  35067315 aaccaaattgatgttcaaataacattgctcat 35067346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 36 - 138
Target Start/End: Original strand, 35792114 - 35792216
Alignment:
Q  36 actttccctctctattactttgatatttgtgtcaatacataattttctttgtaaaaatgtggttgtccatttgattgtcaagtaaattgatgttcaaata 135  Q
    |||||| |||||||||||||||||||||||| ||||||||| |||| ||  |||||||||||||||||||||  |||||||| |||||| ||||||||||    
T  35792114 actttctctctctattactttgatatttgtgccaatacatactttttttgataaaaatgtggttgtccatttagttgtcaagcaaattggtgttcaaata 35792213  T
Q  136 aca 138  Q
    |||    
T  35792214 aca 35792216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 25 - 145
Target Start/End: Original strand, 45405596 - 45405716
Alignment:
Q  25 attatacttttactttccctctctattactttgatatttgtgtcaatacataattttctttgtaaaaatgtggttgtccatttgattgtcaagtaaattg 124  Q
    |||||| |||||||||| ||||||||| ||||||| || ||||||||| || ||||||||||||||||| | ||||||||| || |||||||  | ||||    
T  45405596 attatatttttactttctctctctattgctttgattttcgtgtcaatatatgattttctttgtaaaaatatagttgtccatgtggttgtcaatcacattg 45405695  T
Q  125 atgttcaaataacattactca 145  Q
    |||||||||||||||| ||||    
T  45405696 atgttcaaataacatttctca 45405716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 24 - 140
Target Start/End: Original strand, 5574319 - 5574435
Alignment:
Q  24 tattatacttttactttccctctctattactttgatatttgtgtcaatacataattttctttgtaaaaatgtggttgtccatttgattgtcaagtaaatt 123  Q
    ||||||| ||||||||||  ||||||||| |||||| ||||||| |||||||| |||||||||||||||| ||| |||| || |  |||||||  |||||    
T  5574319 tattatatttttactttctttctctattattttgatttttgtgttaatacatacttttctttgtaaaaatatgggtgtcaatatagttgtcaaccaaatt 5574418  T
Q  124 gatgttcaaataacatt 140  Q
    |||||||||||||||||    
T  5574419 gatgttcaaataacatt 5574435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 43 - 135
Target Start/End: Complemental strand, 33100459 - 33100367
Alignment:
Q  43 ctctctattactttgatatttgtgtcaatacataattttctttgtaaaaatgtggttgtccatttgattgtcaagtaaattgatgttcaaata 135  Q
    ||||||||||||||||| |||||||||||||||| ||||||||||||||||  ||||||| ||||| |||||||  |||| ||||||||||||    
T  33100459 ctctctattactttgatttttgtgtcaatacatacttttctttgtaaaaataaggttgtctatttggttgtcaaacaaatggatgttcaaata 33100367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 15 - 140
Target Start/End: Complemental strand, 41639816 - 41639689
Alignment:
Q  15 tcatactcgtattatacttttactttccctctct--attactttgatatttgtgtcaatacataattttctttgtaaaaatgtggttgtccatttgattg 112  Q
    ||||||||  |||||| |||||||||| ||||||  ||| ||||||| |||||||||| ||||| |||||||||||||||| |||||||| |  || |||    
T  41639816 tcatactcacattatatttttactttctctctctctattgctttgatttttgtgtcaacacatacttttctttgtaaaaatatggttgtcaacgtggttg 41639717  T
Q  113 tcaagtaaattgatgttcaaataacatt 140  Q
    ||||  ||||||||||||||||||||||    
T  41639716 tcaaccaaattgatgttcaaataacatt 41639689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 25 - 138
Target Start/End: Original strand, 38675668 - 38675781
Alignment:
Q  25 attatacttttactttccctctctattactttgatatttgtgtcaatacataattttctttgtaaaaatgtggttgtccatttgattgtcaagtaaattg 124  Q
    |||||| |||||||||| ||||||||| ||||| | |||||| ||||||||| |||||||| ||||  | |||||||| |||||||| |||| ||||| |    
T  38675668 attatatttttactttctctctctatttctttggtttttgtgccaatacatacttttctttttaaagttatggttgtctatttgattatcaaataaatag 38675767  T
Q  125 atgttcaaataaca 138  Q
    ||||||||||||||    
T  38675768 atgttcaaataaca 38675781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 17 - 143
Target Start/End: Complemental strand, 7814607 - 7814476
Alignment:
Q  17 atactcgtattatacttttactttccctctctattactttgatatttgtgtcaatacataattttctttgtaaaaatgtggttgtccattt-------ga 109  Q
    |||||| ||||||| |||||||||| ||||||||||||||||||||| ||||||| |||| ||||||||||  ||||||||||||| ||||             
T  7814607 atactcatattatatttttactttctctctctattactttgatatttatgtcaatgcatacttttctttgt--aaatgtggttgtcaatttagttgtcat 7814510  T
Q  110 ttgtcaagtaaattgatgttcaaataacattact 143  Q
    |||||||| |||||||||||||||||||| ||||    
T  7814509 ttgtcaagcaaattgatgttcaaataacactact 7814476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 54 - 140
Target Start/End: Complemental strand, 39453294 - 39453208
Alignment:
Q  54 tttgatatttgtgtcaatacataattttctttgtaaaaatgtggttgtccatttgattgtcaagtaaattgatgttcaaataacatt 140  Q
    |||||| ||| ||||||||||||||||||||||||||||| || ||||| || || |||||||  ||||||||||||||||||||||    
T  39453294 tttgatttttctgtcaatacataattttctttgtaaaaatatgattgtcaatgtggttgtcaatcaaattgatgttcaaataacatt 39453208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 25 - 107
Target Start/End: Complemental strand, 7777186 - 7777106
Alignment:
Q  25 attatacttttactttccctctctattactttgatatttgtgtcaatacataattttctttgtaaaaatgtggttgtccattt 107  Q
    |||||| |||||||||| ||||||||||||||||||||||||| ||| |||| ||||||||||  ||||||||||||| ||||    
T  7777186 attatatttttactttctctctctattactttgatatttgtgttaatgcatacttttctttgt--aaatgtggttgtcaattt 7777106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 15 - 140
Target Start/End: Complemental strand, 3413209 - 3413084
Alignment:
Q  15 tcatactcgtattatacttttactttccctctctattactttgatatttgtgtcaatacataattttctttgtaaaaatgtggttgtccatttgattgtc 114  Q
    ||||||||  |||||| ||||||||||  | |||||| ||||| | |||||| |||||||| ||||||||||||||||| ||  |||| || |  |||||    
T  3413209 tcatactcacattatatttttactttctttttctattgctttggtttttgtgccaatacatgattttctttgtaaaaatatgactgtcaatgttgttgtc 3413110  T
Q  115 aagtaaattgatgttcaaataacatt 140  Q
    ||  ||||||||||||||||||||||    
T  3413109 aaccaaattgatgttcaaataacatt 3413084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 25 - 90
Target Start/End: Complemental strand, 7795311 - 7795246
Alignment:
Q  25 attatacttttactttccctctctattactttgatatttgtgtcaatacataattttctttgtaaa 90  Q
    |||||| |||||||||| || |||||||||||||||||||||||||| |||| |||||||||||||    
T  7795311 attatatttttactttctctttctattactttgatatttgtgtcaatgcatacttttctttgtaaa 7795246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 38 - 140
Target Start/End: Complemental strand, 42786651 - 42786549
Alignment:
Q  38 tttccctctctattactttgatatttgtgtcaatacataattttctttgtaaaaatgtggttgtccatttgattgtcaagtaaattgatgttcaaataac 137  Q
    |||| |||||| || ||||||| |||||| ||||||||| ||||||||||||||   || ||||| ||||| |||||||  || ||||||||||||||||    
T  42786651 tttctctctctctttctttgatttttgtgccaatacatatttttctttgtaaaatcatgattgtcaatttggttgtcaaccaagttgatgttcaaataac 42786552  T
Q  138 att 140  Q
    |||    
T  42786551 att 42786549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 32 - 91
Target Start/End: Original strand, 10902776 - 10902835
Alignment:
Q  32 ttttactttccctctctattactttgatatttgtgtcaatacataattttctttgtaaaa 91  Q
    |||||||||| ||||||||| ||||||| |||||| |||||||| |||||||||||||||    
T  10902776 ttttactttctctctctattgctttgatttttgtgccaatacatcattttctttgtaaaa 10902835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 19 - 102
Target Start/End: Complemental strand, 37133875 - 37133792
Alignment:
Q  19 actcgtattatacttttactttccctctctattactttgatatttgtgtcaatacataattttctttgtaaaaatgtggttgtc 102  Q
    |||| ||||||  |||||||||| || |||||| ||||||| |||||||||||| || ||||||||||||||| | ||||||||    
T  37133875 actcatattatgtttttactttctctttctattgctttgatttttgtgtcaatatatcattttctttgtaaaattttggttgtc 37133792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 17 - 91
Target Start/End: Original strand, 10731602 - 10731676
Alignment:
Q  17 atactcgtattatacttttactttccctctctattactttgatatttgtgtcaatacataattttctttgtaaaa 91  Q
    |||||| ||||||  |||||||||| ||||||||| ||||||| ||||||||||||| | |||| ||||||||||    
T  10731602 atactcatattatctttttactttctctctctattgctttgatttttgtgtcaatacttcatttcctttgtaaaa 10731676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 43 - 144
Target Start/End: Complemental strand, 3270869 - 3270768
Alignment:
Q  43 ctctctattactttgatatttgtgtcaatacataattttctttgtaaaaatgtggttgtccatttgattgtcaagtaaattgatgttcaaataacattac 142  Q
    |||||| || ||||||| |||||| |||| |||| |||| ||| ||||| | |||||||| ||||  |||||||  || |||||||||||||||||||||    
T  3270869 ctctctcttgctttgatttttgtgccaatccatacttttgtttataaaattatggttgtcaatttagttgtcaaccaagttgatgttcaaataacattac 3270770  T
Q  143 tc 144  Q
    ||    
T  3270769 tc 3270768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 32 - 103
Target Start/End: Original strand, 29025331 - 29025402
Alignment:
Q  32 ttttactttccctctctattactttgatatttgtgtcaatacataattttctttgtaaaaatgtggttgtcc 103  Q
    |||||| ||| ||||||||| ||||| | ||||||||||||| | ||||||||||||||| | |||||||||    
T  29025331 ttttaccttctctctctattgctttggtttttgtgtcaatacctcattttctttgtaaaattttggttgtcc 29025402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 15 - 102
Target Start/End: Complemental strand, 32501213 - 32501126
Alignment:
Q  15 tcatactcgtattatacttttactttccctctctattactttgatatttgtgtcaatacataattttctttgtaaaaatgtggttgtc 102  Q
    ||||||||  |||||  |||||| ||| ||||||||||||||||| ||||||||| ||| | |||| |||||||||| | ||||||||    
T  32501213 tcatactcacattatttttttacgttctctctctattactttgatttttgtgtcactacctcatttcctttgtaaaattttggttgtc 32501126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 43 - 102
Target Start/End: Complemental strand, 42619969 - 42619910
Alignment:
Q  43 ctctctattactttgatatttgtgtcaatacataattttctttgtaaaaatgtggttgtc 102  Q
    ||||||||| ||||||| |||||| ||| ||||| |||||||||||||||| ||||||||    
T  42619969 ctctctattgctttgatttttgtgccaacacatacttttctttgtaaaaatatggttgtc 42619910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 32 - 102
Target Start/End: Original strand, 6972226 - 6972296
Alignment:
Q  32 ttttactttccctctctattactttgatatttgtgtcaatacataattttctttgtaaaaatgtggttgtc 102  Q
    ||||| |||| ||||||||| ||||| | |||||| ||| ||||| |||||||||||||||| ||||||||    
T  6972226 ttttattttctctctctattgctttggtttttgtgccaacacatacttttctttgtaaaaatatggttgtc 6972296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 25 - 146
Target Start/End: Complemental strand, 12339164 - 12339044
Alignment:
Q  25 attatacttttactttccctctctattactttgatatttgtgtcaatacataattttctttgtaaaaatgtggttgtccatttgattgtcaagtaaattg 124  Q
    |||||| |||||||||| || |||||||||||| | | | ||| | | || | |||||||||||||||| ||||||| |||||  ||||||   ||||||    
T  12339164 attataattttactttctctttctattactttggtttatttgttagtgcacatttttctttgtaaaaatatggttgttcatttagttgtcacacaaattg 12339065  T
Q  125 atgttcaaataacattactcat 146  Q
    ||| |||||||||| |||||||    
T  12339064 atg-tcaaataacactactcat 12339044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 35 - 104
Target Start/End: Complemental strand, 15716972 - 15716904
Alignment:
Q  35 tactttccctctctattactttgatatttgtgtcaatacataattttctttgtaaaaatgtggttgtcca 104  Q
    ||||||| ||||||||| ||||||||||||| ||| ||| ||| ||||||||| | ||||||||||||||    
T  15716972 tactttctctctctattgctttgatatttgtatcactacctaaatttctttgt-ataatgtggttgtcca 15716904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 32 - 91
Target Start/End: Complemental strand, 11253542 - 11253483
Alignment:
Q  32 ttttactttccctctctattactttgatatttgtgtcaatacataattttctttgtaaaa 91  Q
    ||||| |||| ||||||||| ||||| | ||||||||||||| | |||||||||||||||    
T  11253542 ttttattttctctctctattgctttggtttttgtgtcaatacctcattttctttgtaaaa 11253483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 15 - 90
Target Start/End: Complemental strand, 12735028 - 12734953
Alignment:
Q  15 tcatactcgtattatacttttactttccctctctattactttgatatttgtgtcaatacataattttctttgtaaa 90  Q
    |||||||| ||||||  |||||| ||  |||| |||||||||||| ||||||||||||| || ||||| |||||||    
T  12735028 tcatactcatattatgtttttaccttatctctatattactttgatttttgtgtcaatacctacttttcattgtaaa 12734953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 101
Target Start/End: Complemental strand, 34435733 - 34435668
Alignment:
Q  35 tactttccctctctattactttgatatttgtgtcaatacataattttctttgtaaaaatgtggttgt 101  Q
    ||||||| ||||||||| |||||||||||||| || ||| ||| ||||||||| | |||||||||||    
T  34435733 tactttcgctctctattgctttgatatttgtgccactacctaaatttctttgt-ataatgtggttgt 34435668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 35 - 104
Target Start/End: Original strand, 1068681 - 1068749
Alignment:
Q  35 tactttccctctctattactttgatatttgtgtcaatacataattttctttgtaaaaatgtggttgtcca 104  Q
    ||||||| ||||||||| |||||||||||||  || ||| ||| ||||||||| | ||||||||||||||    
T  1068681 tactttctctctctattgctttgatatttgtaacactacctaaatttctttgt-ataatgtggttgtcca 1068749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 103
Target Start/End: Complemental strand, 5740802 - 5740714
Alignment:
Q  15 tcatactcgtattatacttttactttccctctctattactttgatatttgtgtcaatacataattttctttgtaaaaatgtggttgtcc 103  Q
    ||||||||  |||||  |||||||||| |||||||||  |||| | |||||||| |||| |  |||||||||||||| | |||||||||    
T  5740802 tcatactcacattatgtttttactttctctctctattgttttggtttttgtgtcgatacctctttttctttgtaaaattatggttgtcc 5740714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #36
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 26 - 90
Target Start/End: Original strand, 13106545 - 13106609
Alignment:
Q  26 ttatacttttactttccctctctattactttgatatttgtgtcaatacataattttctttgtaaa 90  Q
    ||||| |||| ||||| ||||||||| ||||| | ||||||||||||| |  |||||||||||||    
T  13106545 ttatatttttgctttctctctctattgctttgctttttgtgtcaatacctctttttctttgtaaa 13106609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #37
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 101
Target Start/End: Complemental strand, 23754725 - 23754637
Alignment:
Q  13 tttcatactcgtattatacttttactttccctctctattactttgatatttgtgtcaatacataattttctttgtaaaaatgtggttgt 101  Q
    |||||||||| ||||||| |||||||||  ||| |||||  |||| | |||||||||||   | ||||||||||||||| | |||||||    
T  23754725 tttcatactcatattatatttttactttatctcactattgttttggtttttgtgtcaatcactcattttctttgtaaaattttggttgt 23754637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 80; Significance: 1e-37; HSPs: 38)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 25 - 136
Target Start/End: Original strand, 4657366 - 4657477
Alignment:
Q  25 attatacttttactttccctctctattactttgatatttgtgtcaatacataattttctttgtaaaaatgtggttgtccatttgattgtcaagtaaattg 124  Q
    |||||| |||||||||| ||||||||||||||||||||| || ||||||| ||||||||||||||||||||| ||||||||||| |||||||| ||||||    
T  4657366 attatatttttactttctctctctattactttgatatttatgccaatacacaattttctttgtaaaaatgtgattgtccatttggttgtcaagcaaattg 4657465  T
Q  125 atgttcaaataa 136  Q
    ||||||||||||    
T  4657466 atgttcaaataa 4657477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 27 - 144
Target Start/End: Original strand, 45420202 - 45420319
Alignment:
Q  27 tatacttttactttccctctctattactttgatatttgtgtcaatacataattttctttgtaaaaatgtggttgtccatttgattgtcaagtaaattgat 126  Q
    |||| ||||||||||  ||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||| ||||  ||||||| |||||||||    
T  45420202 tatatttttactttctttctctattactttgatatttgtgccaatacatatttttctttgtaaaaatgtggttgtctatttagttgtcaaataaattgat 45420301  T
Q  127 gttcaaataacattactc 144  Q
    |||||||||||| |||||    
T  45420302 gttcaaataacactactc 45420319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 36 - 144
Target Start/End: Original strand, 3771447 - 3771555
Alignment:
Q  36 actttccctctctattactttgatatttgtgtcaatacataattttctttgtaaaaatgtggttgtccatttgattgtcaagtaaattgatgttcaaata 135  Q
    |||||| ||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||  |||||||| ||||||| |||||||||    
T  3771447 actttctctctctattactttgatatttgtgtcaatacgtacttttctttgtaaaaatgtggttgtccatttagttgtcaagcaaattgacgttcaaata 3771546  T
Q  136 acattactc 144  Q
    ||| |||||    
T  3771547 acactactc 3771555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 15 - 147
Target Start/End: Original strand, 1040568 - 1040700
Alignment:
Q  15 tcatactcgtattatacttttactttccctctctattactttgatatttgtgtcaatacataattttctttgtaaaaatgtggttgtccatttgattgtc 114  Q
    ||||||||  |||||| ||||| |||| || |||||||||||||| |||||| ||||||||| ||||||||||||||| ||| ||||| |||||||||||    
T  1040568 tcatactcacattatatttttattttctctttctattactttgatttttgtgccaatacatacttttctttgtaaaaacgtgattgtctatttgattgtc 1040667  T
Q  115 aagtaaattgatgttcaaataacattactcatt 147  Q
    ||| |||| ||||||||||||||| ||||||||    
T  1040668 aagcaaatagatgttcaaataacactactcatt 1040700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 25 - 140
Target Start/End: Original strand, 12070912 - 12071027
Alignment:
Q  25 attatacttttactttccctctctattactttgatatttgtgtcaatacataattttctttgtaaaaatgtggttgtccatttgattgtcaagtaaattg 124  Q
    |||||| |||||||||| || |||||| ||||||| || |||||||||||| ||||||||||||||||  ||||||||||| || |||||||  | ||||    
T  12070912 attatatttttactttctctttctattgctttgattttcgtgtcaatacatgattttctttgtaaaaagatggttgtccatgtggttgtcaatcacattg 12071011  T
Q  125 atgttcaaataacatt 140  Q
    ||||||||||||||||    
T  12071012 atgttcaaataacatt 12071027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 15 - 145
Target Start/End: Original strand, 19843539 - 19843669
Alignment:
Q  15 tcatactcgtattatacttttactttccctctctattactttgatatttgtgtcaatacataattttctttgtaaaaatgtggttgtccatttgattgtc 114  Q
    ||||||||  |||||| |||| ||||| ||||||||| ||||||| |||||| ||| ||||| |||||||||||||||| |  ||||| || ||||||||    
T  19843539 tcatactcagattatatttttcctttctctctctattgctttgatttttgtgccaacacatacttttctttgtaaaaatataattgtcaatatgattgtc 19843638  T
Q  115 aagtaaattgatgttcaaataacattactca 145  Q
    ||  |||||||||||||||||||||| ||||    
T  19843639 aaccaaattgatgttcaaataacattgctca 19843669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 15 - 140
Target Start/End: Complemental strand, 7084731 - 7084606
Alignment:
Q  15 tcatactcgtattatacttttactttccctctctattactttgatatttgtgtcaatacataattttctttgtaaaaatgtggttgtccatttgattgtc 114  Q
    |||||||| ||||||| |||||||||| || |||||| ||||||| |||||  ||| ||||| |||||||||||||||| || ||||| || || |||||    
T  7084731 tcatactcatattatatttttactttctctttctattgctttgatttttgtaccaacacatacttttctttgtaaaaatatgattgtcaatgtggttgtc 7084632  T
Q  115 aagtaaattgatgttcaaataacatt 140  Q
    ||  ||||||||||||||||||||||    
T  7084631 aaccaaattgatgttcaaataacatt 7084606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 15 - 144
Target Start/End: Original strand, 29449266 - 29449394
Alignment:
Q  15 tcatactcgtattatacttttactttccctctctattactttgatatttgtgtcaatacataattttctttgtaaaaatgtggttgtccatttgattgtc 114  Q
    ||||||||  |||||| |||||||||| ||||||||||||||||| ||||||  ||| |||| |||||||||||||||  | |||||| ||||| |||||    
T  29449266 tcatactcacattatatttttactttctctctctattactttgatttttgtgcaaatgcatacttttctttgtaaaaacat-gttgtctatttggttgtc 29449364  T
Q  115 aagtaaattgatgttcaaataacattactc 144  Q
    ||| |||| ||||||||||||||| |||||    
T  29449365 aagcaaatagatgttcaaataacactactc 29449394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 15 - 141
Target Start/End: Complemental strand, 42532755 - 42532629
Alignment:
Q  15 tcatactcgtattatacttttactttccctctctattactttgatatttgtgtcaatacataattttctttgtaaaaatgtggttgtccatttgattgtc 114  Q
    ||||||||  |||||| |||||||||  ||||||||||||||||| || ||| ||||||||| |||||||| ||||||  | || ||| ||||| |||||    
T  42532755 tcatactcacattatatttttactttatctctctattactttgattttcgtgccaatacatatttttctttataaaaacatagtagtctatttggttgtc 42532656  T
Q  115 aagtaaattgatgttcaaataacatta 141  Q
    ||| |||| ||||||||||||||||||    
T  42532655 aagcaaatagatgttcaaataacatta 42532629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 15 - 144
Target Start/End: Original strand, 40700250 - 40700379
Alignment:
Q  15 tcatactcgtattatacttttactttccctctctattactttgatatttgtgtcaatacataattttctttgtaaaaatgtggttgtccatttgattgtc 114  Q
    ||||||||  |||||| |||||||||  ||||||||||||||||| || ||||||||| ||| |||| ||| ||||||  || ||||| ||||| |||||    
T  40700250 tcatactcacattatatttttactttatctctctattactttgattttcgtgtcaatatatatttttttttataaaaacatgattgtctatttggttgtc 40700349  T
Q  115 aagtaaattgatgttcaaataacattactc 144  Q
    ||| |||| ||||||||||||||| |||||    
T  40700350 aagcaaatagatgttcaaataacactactc 40700379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 43 - 144
Target Start/End: Complemental strand, 12784385 - 12784284
Alignment:
Q  43 ctctctattactttgatatttgtgtcaatacataattttctttgtaaaaatgtggttgtccatttgattgtcaagtaaattgatgttcaaataacattac 142  Q
    ||||||||||||||||| ||| || |||| |||| |||||||||||||||  |||||||| ||||  |||||||| |||| ||||||||||||||| |||    
T  12784385 ctctctattactttgatttttatgccaatgcatatttttctttgtaaaaacatggttgtctatttagttgtcaagcaaatagatgttcaaataacactac 12784286  T
Q  143 tc 144  Q
    ||    
T  12784285 tc 12784284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 15 - 138
Target Start/End: Original strand, 14328436 - 14328559
Alignment:
Q  15 tcatactcgtattatacttttactttccctctctattactttgatatttgtgtcaatacataattttctttgtaaaaatgtggttgtccatttgattgtc 114  Q
    ||||||||  |||||| |||||||||| |||||| || ||||||| || |||||||||||| |||||||| |||||||| |  |||||||| || |||||    
T  14328436 tcatactcacattatatttttactttctctctctgttgctttgattttcgtgtcaatacatgattttcttagtaaaaatataattgtccatgtggttgtc 14328535  T
Q  115 aagtaaattgatgttcaaataaca 138  Q
    ||  | | ||||||||||||||||    
T  14328536 aatcacaatgatgttcaaataaca 14328559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 63 - 144
Target Start/End: Original strand, 4319809 - 4319890
Alignment:
Q  63 tgtgtcaatacataattttctttgtaaaaatgtggttgtccatttgattgtcaagtaaattgatgttcaaataacattactc 144  Q
    ||||||||||||||||||||||| ||||||  ||  |||| |||| |||||||||||||| ||||||||||||||| |||||    
T  4319809 tgtgtcaatacataattttctttataaaaacatgactgtctatttaattgtcaagtaaatagatgttcaaataacactactc 4319890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 43 - 144
Target Start/End: Complemental strand, 17999666 - 17999565
Alignment:
Q  43 ctctctattactttgatatttgtgtcaatacataattttctttgtaaaaatgtggttgtccatttgattgtcaagtaaattgatgttcaaataacattac 142  Q
    ||||||||||||||||| || ||| ||||||||| |||||||||||||||   ||||||| ||||  |||||||  |||| ||||||||||||||| |||    
T  17999666 ctctctattactttgattttcgtgccaatacatatttttctttgtaaaaacaaggttgtctatttagttgtcaaacaaatagatgttcaaataacactac 17999567  T
Q  143 tc 144  Q
    ||    
T  17999566 tc 17999565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 69 - 128
Target Start/End: Complemental strand, 40358049 - 40357990
Alignment:
Q  69 aatacataattttctttgtaaaaatgtggttgtccatttgattgtcaagtaaattgatgt 128  Q
    ||||||||||||||||||||||||| || ||||| ||||||||||||| |||||||||||    
T  40358049 aatacataattttctttgtaaaaatatgattgtctatttgattgtcaaataaattgatgt 40357990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 32 - 102
Target Start/End: Original strand, 2076640 - 2076710
Alignment:
Q  32 ttttactttccctctctattactttgatatttgtgtcaatacataattttctttgtaaaaatgtggttgtc 102  Q
    |||||||||| || |||||| ||||||| ||||||||||||| | ||||||||||||||| | ||||||||    
T  2076640 ttttactttctctttctattgctttgatttttgtgtcaatacctcattttctttgtaaaattttggttgtc 2076710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 15 - 140
Target Start/End: Complemental strand, 21738632 - 21738509
Alignment:
Q  15 tcatactcgtattatacttttactttccctctctattactttgatatttgtgtcaatacataattttctttgtaaaaatgtggttgtccatttgattgtc 114  Q
    ||||||||  |||||| ||||||||||  | || ||| ||||| | |||||| ||| ||||| |||||||||||||||| || ||||| || |  |||||    
T  21738632 tcatactcacattatatttttactttc--tttcaattgctttggtttttgtgccaacacatatttttctttgtaaaaatatgattgtcaatgtcgttgtc 21738535  T
Q  115 aagtaaattgatgttcaaataacatt 140  Q
    ||  ||||||||||||||||||||||    
T  21738534 aaccaaattgatgttcaaataacatt 21738509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 15 - 140
Target Start/End: Complemental strand, 43658726 - 43658603
Alignment:
Q  15 tcatactcgtattatacttttactttccctctctattactttgatatttgtgtcaatacataattttctttgtaaaaatgtggttgtccatttgattgtc 114  Q
    |||||||  ||||||| ||||||||||  ||||| || | ||||| ||||||  |||||||| |||||||||||||||  | |||||| || || |||||    
T  43658726 tcatacttatattatatttttactttc--tctctgttgcattgatttttgtgctaatacatacttttctttgtaaaaaaatagttgtcaatatggttgtc 43658629  T
Q  115 aagtaaattgatgttcaaataacatt 140  Q
    ||  ||||| ||||||||||||||||    
T  43658628 aaccaaattaatgttcaaataacatt 43658603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 35 - 104
Target Start/End: Complemental strand, 37316811 - 37316743
Alignment:
Q  35 tactttccctctctattactttgatatttgtgtcaatacataattttctttgtaaaaatgtggttgtcca 104  Q
    ||||||| ||||||||| ||||||||||||||||| ||| ||| ||||||||| | ||||||||||||||    
T  37316811 tactttctctctctattgctttgatatttgtgtcactacctaaatttctttgt-ataatgtggttgtcca 37316743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 61 - 146
Target Start/End: Original strand, 39309510 - 39309595
Alignment:
Q  61 tttgtgtcaatacataattttctttgtaaaaatgtggttgtccatttgattgtcaagtaaattgatgttcaaataacattactcat 146  Q
    ||||||| |||| ||| |||||||||||||||| || || || || ||||||||||  |||||||| |||||||||| ||||||||    
T  39309510 tttgtgttaatatatacttttctttgtaaaaatatgattatcaatatgattgtcaaccaaattgattttcaaataactttactcat 39309595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 19 - 91
Target Start/End: Complemental strand, 27490743 - 27490671
Alignment:
Q  19 actcgtattatacttttactttccctctctattactttgatatttgtgtcaatacataattttctttgtaaaa 91  Q
    |||| ||||||  ||||| |||| ||||||||| ||||||| ||||||| ||||||| |||||||||||||||    
T  27490743 actcatattatgtttttaatttctctctctattgctttgatttttgtgttaatacatcattttctttgtaaaa 27490671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 15 - 118
Target Start/End: Complemental strand, 4138202 - 4138100
Alignment:
Q  15 tcatactcgtattatacttttactttccctctctattactttgatatttgtgtcaatacataattttctttgtaaaaatgtggttgtccatttgattgtc 114  Q
    ||||||||  |||||| ||||||||||  |||||||||||||  | || ||| ||||| ||| ||||||||||||| || | |||||||||||| |||||    
T  4138202 tcatactcacattataattttactttctgtctctattactttagttttggtgccaata-atacttttctttgtaaatatattgttgtccatttggttgtc 4138104  T
Q  115 aagt 118  Q
    ||||    
T  4138103 aagt 4138100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 36 - 102
Target Start/End: Original strand, 19642673 - 19642739
Alignment:
Q  36 actttccctctctattactttgatatttgtgtcaatacataattttctttgtaaaaatgtggttgtc 102  Q
    |||||| ||||||||| ||||||| ||||||||||| | | |||||||||| |||| ||||||||||    
T  19642673 actttctctctctattgctttgatttttgtgtcaatgcttcattttctttgcaaaattgtggttgtc 19642739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 15 - 102
Target Start/End: Original strand, 33616520 - 33616609
Alignment:
Q  15 tcatactcgtattatacttttactttccctctct--attactttgatatttgtgtcaatacataattttctttgtaaaaatgtggttgtc 102  Q
    ||||| || ||||||| |||||||||| ||||||  ||| ||||||| |||||  ||| ||||| |||||||||||||||| ||||||||    
T  33616520 tcatattcatattatatttttactttctctctctctattgctttgatttttgtaccaacacatacttttctttgtaaaaatatggttgtc 33616609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 71 - 116
Target Start/End: Original strand, 18982951 - 18982996
Alignment:
Q  71 tacataattttctttgtaaaaatgtggttgtccatttgattgtcaa 116  Q
    |||||| |||||||||||||||| |||||||||||||| |||||||    
T  18982951 tacatacttttctttgtaaaaatatggttgtccatttggttgtcaa 18982996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 15 - 102
Target Start/End: Original strand, 6336307 - 6336392
Alignment:
Q  15 tcatactcgtattatacttttactttccctctctattactttgatatttgtgtcaatacataattttctttgtaaaaatgtggttgtc 102  Q
    |||||||| ||||||| ||||| ||||  |||||||  ||||| | |||||| ||| ||||| |||||||||||||||| ||||||||    
T  6336307 tcatactcatattatatttttattttc--tctctatcgctttggtttttgtgccaacacatacttttctttgtaaaaatatggttgtc 6336392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 26 - 90
Target Start/End: Complemental strand, 7664072 - 7664008
Alignment:
Q  26 ttatacttttactttccctctctattactttgatatttgtgtcaatacataattttctttgtaaa 90  Q
    ||||| |||||||||| ||||||||| ||||| | ||||||||||||| |  |||||||||||||    
T  7664072 ttatatttttactttctctctctattgctttggtttttgtgtcaatacctctttttctttgtaaa 7664008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 32 - 144
Target Start/End: Original strand, 18846682 - 18846794
Alignment:
Q  32 ttttactttccctctctattactttgatatttgtgtcaatacataattttctttgtaaaaatgtggttgtccatttgattgtcaagtaaattgatgttca 131  Q
    |||||||||| ||||||||||||||||| |||||  |||||||| ||||| |||| |||| | || |||||      |||||||  ||||| ||||||||    
T  18846682 ttttactttctctctctattactttgatttttgtaccaatacatcattttttttgcaaaattttgattgtcataaaaattgtcatctaaatggatgttca 18846781  T
Q  132 aataacattactc 144  Q
    |||||||| ||||    
T  18846782 aataacataactc 18846794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 25 - 144
Target Start/End: Complemental strand, 36191028 - 36190908
Alignment:
Q  25 attatacttttactttccctctctattactttgatatttgtgtcaatacataattttctttgtaaaaatgtgg-ttgtccatttgattgtcaagtaaatt 123  Q
    |||||| |||||||||  |||||||||||||| || ||  | |||||| ||  |||||||||||||||  ||| ||||  |||||||| ||||  ||||     
T  36191028 attatatttttactttatctctctattactttaattttcatatcaatagatgcttttctttgtaaaaacatggtttgtttatttgattatcaaacaaata 36190929  T
Q  124 gatgttcaaataacattactc 144  Q
    ||||||||||||||| |||||    
T  36190928 gatgttcaaataacactactc 36190908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 25 - 140
Target Start/End: Complemental strand, 26290857 - 26290742
Alignment:
Q  25 attatacttttactttccctctctattactttgatatttgtgtcaatacataattttctttgtaaaaatgtggttgtccatttgattgtcaagtaaattg 124  Q
    |||||| ||| || ||| || ||| |||||||| | |||||  ||| ||||| |||||||||||||||| || ||||| || |  || ||||  ||||||    
T  26290857 attatattttcaccttctctttctgttactttggtttttgtaacaacacatatttttctttgtaaaaatatgattgtcaatgtagttatcaaccaaattg 26290758  T
Q  125 atgttcaaataacatt 140  Q
    ||||||||||||||||    
T  26290757 atgttcaaataacatt 26290742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 101
Target Start/End: Complemental strand, 37731196 - 37731131
Alignment:
Q  35 tactttccctctctattactttgatatttgtgtcaatacataattttctttgtaaaaatgtggttgt 101  Q
    ||||||| ||||||||| |||||||||||||| || ||| ||| ||||||||| | |||||||||||    
T  37731196 tactttcgctctctattgctttgatatttgtgccactacctaaatttctttgt-ataatgtggttgt 37731131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 102
Target Start/End: Original strand, 41195655 - 41195725
Alignment:
Q  32 ttttactttccctctctattactttgatatttgtgtcaatacataattttctttgtaaaaatgtggttgtc 102  Q
    |||||||||| ||||||||| ||||| | ||||||||||||  | |||| |||||||||| | ||||||||    
T  41195655 ttttactttctctctctattgctttggtttttgtgtcaatatctcatttcctttgtaaaattttggttgtc 41195725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 90
Target Start/End: Complemental strand, 44977499 - 44977441
Alignment:
Q  32 ttttactttccctctctattactttgatatttgtgtcaatacataattttctttgtaaa 90  Q
    |||||||||| ||||||||| ||||| | |||||||||||||   ||||||||||||||    
T  44977499 ttttactttctctctctattgctttggtttttgtgtcaataccccattttctttgtaaa 44977441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 25 - 90
Target Start/End: Original strand, 8427617 - 8427682
Alignment:
Q  25 attatacttttactttccctctctattactttgatatttgtgtcaatacataattttctttgtaaa 90  Q
    ||||||||||||||||| |||||||||| |||| | || |||||||||  |||||| |||| ||||    
T  8427617 attatacttttactttctctctctattattttggttttcgtgtcaataactaatttcctttataaa 8427682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 35 - 88
Target Start/End: Original strand, 19916730 - 19916783
Alignment:
Q  35 tactttccctctctattactttgatatttgtgtcaatacataattttctttgta 88  Q
    ||||||| |||||||||| |||||||||||||||| | | ||| ||||||||||    
T  19916730 tactttctctctctattattttgatatttgtgtcactgcctaaatttctttgta 19916783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 33 - 90
Target Start/End: Original strand, 42821444 - 42821500
Alignment:
Q  33 tttactttccctctctattactttgatatttgtgtcaatacataattttctttgtaaa 90  Q
    ||||||||| |||| |||| ||| ||| ||||||||||||||| ||||||||||||||    
T  42821444 tttactttctctctttattgctt-gatttttgtgtcaatacatcattttctttgtaaa 42821500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 43 - 91
Target Start/End: Original strand, 29349588 - 29349636
Alignment:
Q  43 ctctctattactttgatatttgtgtcaatacataattttctttgtaaaa 91  Q
    |||||| |||||||||| |||||| | |||||| |||||||||||||||    
T  29349588 ctctctgttactttgatttttgtgccgatacattattttctttgtaaaa 29349636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 73
Target Start/End: Original strand, 40635767 - 40635827
Alignment:
Q  13 tttcatactcgtattatacttttactttccctctctattactttgatatttgtgtcaatac 73  Q
    |||||||||| ||||||| || |||||||  |||||||||||||  | |||||||||||||    
T  40635767 tttcatactcatattatatttctactttctttctctattactttagtttttgtgtcaatac 40635827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 79; Significance: 5e-37; HSPs: 25)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 25 - 144
Target Start/End: Original strand, 1376429 - 1376550
Alignment:
Q  25 attatacttttacttt--ccctctctattactttgatatttgtgtcaatacataattttctttgtaaaaatgtggttgtccatttgattgtcaagtaaat 122  Q
    |||||| |||||||||  | |||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||  |||||||| ||||    
T  1376429 attatatttttactttatctctctctattacttttatatttgtgtcaatacatatttttctttgtaaaaatgtggttgtccatttagttgtcaagcaaat 1376528  T
Q  123 tgatgttcaaataacattactc 144  Q
    |||||||||||||||| |||||    
T  1376529 tgatgttcaaataacactactc 1376550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 25 - 144
Target Start/End: Original strand, 1384177 - 1384298
Alignment:
Q  25 attatacttttacttt--ccctctctattactttgatatttgtgtcaatacataattttctttgtaaaaatgtggttgtccatttgattgtcaagtaaat 122  Q
    |||||| |||||||||  | |||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||  |||||||| ||||    
T  1384177 attatatttttactttatctctctctattacttttatatttgtgtcaatacatatttttctttgtaaaaatgtggttgtccatttagttgtcaagcaaat 1384276  T
Q  123 tgatgttcaaataacattactc 144  Q
    |||||||||||||||| |||||    
T  1384277 tgatgttcaaataacactactc 1384298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 15 - 143
Target Start/End: Original strand, 13423023 - 13423151
Alignment:
Q  15 tcatactcgtattatacttttactttccctctctattactttgatatttgtgtcaatacataattttctttgtaaaaatgtggttgtccatttgattgtc 114  Q
    ||||||||  |||||| |||||||||| |||||||||| |||  | |||||| ||||||||| |||||||||||||||| | |||||||| ||| |||||    
T  13423023 tcatactcacattatatttttactttctctctctattattttagtttttgtgccaatacatatttttctttgtaaaaatatagttgtccacttggttgtc 13423122  T
Q  115 aagtaaattgatgttcaaataacattact 143  Q
    || ||||| ||||||||||||||| ||||    
T  13423123 aaataaatggatgttcaaataacactact 13423151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 46 - 138
Target Start/End: Original strand, 27612960 - 27613052
Alignment:
Q  46 tctattactttgatatttgtgtcaatacataattttctttgtaaaaatgtggttgtccatttgattgtcaagtaaattgatgttcaaataaca 138  Q
    |||||||||||||| || ||||||||||||| ||||||||||||| || ||||||||||||||||||||||  |||| |||||||||||||||    
T  27612960 tctattactttgattttcgtgtcaatacatatttttctttgtaaacatatggttgtccatttgattgtcaaacaaatagatgttcaaataaca 27613052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 68 - 138
Target Start/End: Original strand, 33651128 - 33651198
Alignment:
Q  68 caatacataattttctttgtaaaaatgtggttgtccatttgattgtcaagtaaattgatgttcaaataaca 138  Q
    |||||||||||||||||||||||||| |||||||| |||||||||||||  |||| |||||||||||||||    
T  33651128 caatacataattttctttgtaaaaatatggttgtctatttgattgtcaaacaaatggatgttcaaataaca 33651198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 32 - 144
Target Start/End: Original strand, 31869139 - 31869251
Alignment:
Q  32 ttttactttccctctctattactttgatatttgtgtcaatacataattttctttgtaaaaatgtggttgtccatttgattgtcaagtaaattgatgttca 131  Q
    ||||| |||| ||||||||||||||||| || ||| ||||||||| ||| |||||||||||   |  |||| |||||||||||||| |||| ||||||||    
T  31869139 ttttattttctctctctattactttgattttcgtgccaatacatattttcctttgtaaaaacaagagtgtctatttgattgtcaagcaaatagatgttca 31869238  T
Q  132 aataacattactc 144  Q
    ||||||| |||||    
T  31869239 aataacactactc 31869251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 15 - 144
Target Start/End: Original strand, 28630153 - 28630282
Alignment:
Q  15 tcatactcgtattatacttttactttccctctctattactttgatatttgtgtcaatacataattttctttgtaaaaatgtggttgtccatttgattgtc 114  Q
    ||||||||  ||||||  ||||||||| || |||||||||||||| |||||| ||| ||||  |||| ||||||||||| |||||||| ||||  |||||    
T  28630153 tcatactcacattatatatttactttctctttctattactttgatttttgtgccaacacatgcttttatttgtaaaaatatggttgtctatttagttgtc 28630252  T
Q  115 aagtaaattgatgttcaaataacattactc 144  Q
    |   |||| |||||||| ||||||||||||    
T  28630253 acacaaatagatgttcatataacattactc 28630282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 15 - 144
Target Start/End: Complemental strand, 9083078 - 9082951
Alignment:
Q  15 tcatactcgtattatacttttactttccctctctattactttgatatttgtgtcaatacataattttctttgtaaaaatgtggttgtccatttgattgtc 114  Q
    ||||||||  |||||| ||||||||||  ||||| |||||||| | ||| ||||||  || | ||  || |||||||||||||||||||||||| || ||    
T  9083078 tcatactcacattataattttactttctttctctgttactttggtttttatgtcaaagcacactt--ctgtgtaaaaatgtggttgtccatttggttatc 9082981  T
Q  115 aagtaaattgatgttcaaataacattactc 144  Q
    |  ||||||||||||||||||||| |||||    
T  9082980 acataaattgatgttcaaataacactactc 9082951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 32 - 102
Target Start/End: Complemental strand, 22079563 - 22079493
Alignment:
Q  32 ttttactttccctctctattactttgatatttgtgtcaatacataattttctttgtaaaaatgtggttgtc 102  Q
    |||||||||| ||||||||| ||||||| ||||||||||||||| |||||||||| |||| | ||||||||    
T  22079563 ttttactttctctctctattgctttgatttttgtgtcaatacatcattttctttgcaaaattttggttgtc 22079493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 15 - 101
Target Start/End: Original strand, 26595403 - 26595489
Alignment:
Q  15 tcatactcgtattatacttttactttccctctctattactttgatatttgtgtcaatacataattttctttgtaaaaatgtggttgt 101  Q
    ||||||||  |||||  |||||||||| ||||||||| ||||| | ||||||||||||| | ||||||||||||||| | |||||||    
T  26595403 tcatactcacattatgtttttactttctctctctattgctttggtttttgtgtcaatacctcattttctttgtaaaattttggttgt 26595489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 84 - 145
Target Start/End: Original strand, 16337142 - 16337203
Alignment:
Q  84 ttgtaaaaatgtggttgtccatttgattgtcaagtaaattgatgttcaaataacattactca 145  Q
    |||||||||| |||||||| ||||| ||||||| ||||| ||||||||||||||| ||||||    
T  16337142 ttgtaaaaatatggttgtctatttggttgtcaattaaatggatgttcaaataacactactca 16337203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 43 - 102
Target Start/End: Original strand, 277073 - 277132
Alignment:
Q  43 ctctctattactttgatatttgtgtcaatacataattttctttgtaaaaatgtggttgtc 102  Q
    ||||||||| ||||||| |||||||||||| || ||||||||||||||| | ||||||||    
T  277073 ctctctattgctttgatttttgtgtcaatatatcattttctttgtaaaattttggttgtc 277132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 15 - 102
Target Start/End: Complemental strand, 16337939 - 16337852
Alignment:
Q  15 tcatactcgtattatacttttactttccctctctattactttgatatttgtgtcaatacataattttctttgtaaaaatgtggttgtc 102  Q
    ||||||||  |||||| |||||||||| ||| |||||   ||| | || |||||||||||||  ||||||||||||||||||||||||    
T  16337939 tcatactcacattatatttttactttctctcactattgtcttggttttcgtgtcaatacatacatttctttgtaaaaatgtggttgtc 16337852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 33 - 103
Target Start/End: Complemental strand, 31883302 - 31883232
Alignment:
Q  33 tttactttccctctctattactttgatatttgtgtcaatacataattttctttgtaaaaatgtggttgtcc 103  Q
    ||||||||| ||||||||| ||||||| |||||||||| || |  |||||||||||||| | |||||||||    
T  31883302 tttactttctctctctattgctttgatttttgtgtcaagacctctttttctttgtaaaattatggttgtcc 31883232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 35 - 104
Target Start/End: Complemental strand, 18065086 - 18065018
Alignment:
Q  35 tactttccctctctattactttgatatttgtgtcaatacataattttctttgtaaaaatgtggttgtcca 104  Q
    ||||||| ||||||||| |||||||||||||| || ||| ||| ||||||||| | ||||||||||||||    
T  18065086 tactttctctctctattgctttgatatttgtgccactacctaaatttctttgt-ataatgtggttgtcca 18065018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 13 - 102
Target Start/End: Complemental strand, 32316947 - 32316858
Alignment:
Q  13 tttcatactcgtattatacttttactttccctctctattactttgatatttgtgtcaatacataattttctttgtaaaaatgtggttgtc 102  Q
    ||||||||||  |||||  |||||||||  ||||||||| ||||| | ||||||||| ||| | ||||||||||||||| | ||||||||    
T  32316947 tttcatactcacattatctttttactttatctctctattgctttggtttttgtgtcagtacctcattttctttgtaaaattttggttgtc 32316858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 36 - 91
Target Start/End: Complemental strand, 3853303 - 3853248
Alignment:
Q  36 actttccctctctattactttgatatttgtgtcaatacataattttctttgtaaaa 91  Q
    |||||| ||||||||| ||||||| ||||||||||||  | |||||||||||||||    
T  3853303 actttctctctctattgctttgatttttgtgtcaatatctcattttctttgtaaaa 3853248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 25 - 116
Target Start/End: Complemental strand, 10944752 - 10944661
Alignment:
Q  25 attatacttttactttccctctctattactttgatatttgtgtcaatacataattttctttgtaaaaatgtggttgtccatttgattgtcaa 116  Q
    |||||| ||||||||||  | | ||||| |||| | ||||||  |||||||| || ||||||| ||||| |||||| |||||||||||||||    
T  10944752 attatatttttactttctttttttattattttggtttttgtgctaatacatacttatctttgttaaaatatggttgcccatttgattgtcaa 10944661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 15 - 102
Target Start/End: Complemental strand, 16368063 - 16367976
Alignment:
Q  15 tcatactcgtattatacttttactttccctctctattactttgatatttgtgtcaatacataattttctttgtaaaaatgtggttgtc 102  Q
    ||||||||  |||||| |||||||||| ||| |||||   ||| | ||||||||||||||||  ||||||| |||||||||| |||||    
T  16368063 tcatactcacattatatttttactttctctcactattgtcttggtttttgtgtcaatacatacatttctttataaaaatgtgattgtc 16367976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 48 - 143
Target Start/End: Complemental strand, 31760271 - 31760176
Alignment:
Q  48 tattactttgatatttgtgtcaatacataattttctttgtaaaaatgtggttgtccatttgattgtcaagtaaattgatgttcaaataacattact 143  Q
    |||||||||| | ||| |||||||| |||  ||| |||||| ||| ||||||||  ||||| |||||||  |||| ||||||||||||||| ||||    
T  31760271 tattactttggtttttatgtcaatatatacatttttttgtataaacgtggttgtttatttggttgtcaaacaaatggatgttcaaataacactact 31760176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 90
Target Start/End: Complemental strand, 20998145 - 20998087
Alignment:
Q  32 ttttactttccctctctattactttgatatttgtgtcaatacataattttctttgtaaa 90  Q
    |||||||||| ||||||||| ||||| | ||||| ||||||| | ||||||||||||||    
T  20998145 ttttactttctctctctattgctttggtttttgtatcaatacctcattttctttgtaaa 20998087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 15 - 88
Target Start/End: Original strand, 8645363 - 8645436
Alignment:
Q  15 tcatactcgtattatacttttactttccctctctattactttgatatttgtgtcaatacataattttctttgta 88  Q
    ||||||||  ||||| ||||||||||| ||||||||| ||||||| | || |||| ||| ||| ||||||||||    
T  8645363 tcatactcacattatccttttactttctctctctattgctttgatttatgcgtcactacctaaatttctttgta 8645436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 43 - 92
Target Start/End: Original strand, 16336909 - 16336958
Alignment:
Q  43 ctctctattactttgatatttgtgtcaatacataattttctttgtaaaaa 92  Q
    ||||||||||||||| | || ||||||| ||||| |||||||||||||||    
T  16336909 ctctctattactttgcttttcgtgtcaacacatacttttctttgtaaaaa 16336958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 90
Target Start/End: Complemental strand, 3552174 - 3552097
Alignment:
Q  11 tttttcatactcgtattatacttttactttccctctctattactttgatatttgtgtcaatacataattttctttgtaaa 90  Q
    ||||| ||||||  |||||| ||||||||||  ||||| |||||||| |  |||||||||||| | ||||||||||||||    
T  3552174 ttttttatactcacattatatttttactttc--tctctgttactttgcttattgtgtcaataccttattttctttgtaaa 3552097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 43 - 91
Target Start/End: Original strand, 4820449 - 4820497
Alignment:
Q  43 ctctctattactttgatatttgtgtcaatacataattttctttgtaaaa 91  Q
    ||||||||| ||||||| ||||||||||| | | |||||||||||||||    
T  4820449 ctctctattgctttgatttttgtgtcaatgcctcattttctttgtaaaa 4820497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 66; Significance: 3e-29; HSPs: 31)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 19 - 140
Target Start/End: Complemental strand, 35822987 - 35822866
Alignment:
Q  19 actcgtattatacttttactttccctctctattactttgatatttgtgtcaatacataattttctttgtaaaaatgtggttgtccatttgattgtcaagt 118  Q
    ||||| |||||| |||||||||| ||||||||| ||||||| |||||| ||||||||| |||||||||||||||| |||||||| |  || |||||||      
T  35822987 actcgcattatatttttactttctctctctattgctttgatttttgtgccaatacatatttttctttgtaaaaatatggttgtcaacgtggttgtcaacc 35822888  T
Q  119 aaattgatgttcaaataacatt 140  Q
    ||||||||||||||||||||||    
T  35822887 aaattgatgttcaaataacatt 35822866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 47 - 135
Target Start/End: Complemental strand, 44496787 - 44496699
Alignment:
Q  47 ctattactttgatatttgtgtcaatacataattttctttgtaaaaatgtggttgtccatttgattgtcaagtaaattgatgttcaaata 135  Q
    |||||| ||||||||||||| |||||||||||||||||||||||||| ||||||||||||| ||||||||  |||||||||||||||||    
T  44496787 ctattattttgatatttgtgccaatacataattttctttgtaaaaatatggttgtccatttaattgtcaaacaaattgatgttcaaata 44496699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 15 - 102
Target Start/End: Original strand, 48145579 - 48145666
Alignment:
Q  15 tcatactcgtattatacttttactttccctctctattactttgatatttgtgtcaatacataattttctttgtaaaaatgtggttgtc 102  Q
    ||||||||  |||||| |||||||||| |||||||||||||||||||||||| ||||||||| |||||||||||||||| ||||||||    
T  48145579 tcatactcacattatatttttactttctctctctattactttgatatttgtgccaatacatacttttctttgtaaaaatatggttgtc 48145666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 15 - 136
Target Start/End: Complemental strand, 41590536 - 41590415
Alignment:
Q  15 tcatactcgtattatacttttactttccctctctattactttgatatttgtgtcaatacataattttctttgtaaaaatgtggttgtccatttgattgtc 114  Q
    |||||||| | ||||| ||||||||||  | |||||||||||||| |||||| ||||||||| ||||| |||||||||  |||||||| ||||| |||||    
T  41590536 tcatactcatcttatatttttactttctttttctattactttgatttttgtgccaatacatatttttccttgtaaaaacatggttgtctatttggttgtc 41590437  T
Q  115 aagtaaattgatgttcaaataa 136  Q
    ||| |||| |||||||||||||    
T  41590436 aagcaaatagatgttcaaataa 41590415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 16 - 147
Target Start/End: Complemental strand, 34507221 - 34507090
Alignment:
Q  16 catactcgtattatacttttactttccctctctattactttgatatttgtgtcaatacataattttctttgtaaaaatgtggttgtccatttgattgtca 115  Q
    |||||||  |||||| |||||||||| ||||||||| ||||||| || |||||||||||| ||||| ||| ||||||  | ||||||||| || ||||||    
T  34507221 catactcacattatatttttactttctctctctattgctttgattttcgtgtcaatacatgattttttttataaaaagatagttgtccatgtggttgtca 34507122  T
Q  116 agtaaattgatgttcaaataacattactcatt 147  Q
    |  | |||||||||||||||||||| ||||||    
T  34507121 atcacattgatgttcaaataacatttctcatt 34507090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 15 - 102
Target Start/End: Complemental strand, 42598224 - 42598137
Alignment:
Q  15 tcatactcgtattatacttttactttccctctctattactttgatatttgtgtcaatacataattttctttgtaaaaatgtggttgtc 102  Q
    |||||||| ||||||| || ||||||  ||||||||||||| |||||||||| |||||||||||||||||| ||||||||||||||||    
T  42598224 tcatactcatattatatttatactttttctctctattacttagatatttgtgccaatacataattttctttataaaaatgtggttgtc 42598137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 15 - 140
Target Start/End: Original strand, 42584857 - 42584982
Alignment:
Q  15 tcatactcgtattatacttttactttccctctctattactttgatatttgtgtcaatacataattttctttgtaaaaatgtggttgtccatttgattgtc 114  Q
    ||||||||  |||||| |||||||||  ||||||||| |||||||  | ||||||||| || ||||||||||||||||  ||||||||||| || |||||    
T  42584857 tcatactcacattatatttttactttatctctctattgctttgattctcgtgtcaatagatgattttctttgtaaaaagatggttgtccatgtggttgtc 42584956  T
Q  115 aagtaaattgatgttcaaataacatt 140  Q
    ||  | ||||||||||||||||||||    
T  42584957 aatcacattgatgttcaaataacatt 42584982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 32 - 147
Target Start/End: Original strand, 31398196 - 31398311
Alignment:
Q  32 ttttactttccctctctattactttgatatttgtgtcaatacataattttctttgtaaaaatgtggttgtccatttgattgtcaagtaaattgatgttca 131  Q
    ||||| |||| ||||||||||||||||| || ||| ||||||||| |||||||||||||||   ||||||| ||||| |||||||  ||||  |||||||    
T  31398196 ttttattttctctctctattactttgattttcgtgccaatacatatttttctttgtaaaaacaaggttgtctatttggttgtcaaacaaataaatgttca 31398295  T
Q  132 aataacattactcatt 147  Q
    ||||||| ||||||||    
T  31398296 aataacactactcatt 31398311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 25 - 140
Target Start/End: Complemental strand, 41430158 - 41430043
Alignment:
Q  25 attatacttttactttccctctctattactttgatatttgtgtcaatacataattttctttgtaaaaatgtggttgtccatttgattgtcaagtaaattg 124  Q
    |||||| |||||||||  ||||||||| ||||| | || ||||||||| || ||||||||||||||||  ||||||||||| || |||||||  | ||||    
T  41430158 attatatttttactttatctctctattgctttggttttcgtgtcaatatatgattttctttgtaaaaagatggttgtccatgtggttgtcaatcacattg 41430059  T
Q  125 atgttcaaataacatt 140  Q
    ||||||||||||||||    
T  41430058 atgttcaaataacatt 41430043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 25 - 140
Target Start/End: Complemental strand, 36352591 - 36352475
Alignment:
Q  25 attatacttttactttccctctctattactttgatatttgtgtcaatacataattttctttgtaaaaatgtggttgtccat-ttgattgtcaagtaaatt 123  Q
    |||||| |||||||||  ||||||||| ||||||| || ||||||||| || ||||||||||||||||  ||||||||||| | | |||||||  | |||    
T  36352591 attatatttttactttatctctctattgctttgattttcgtgtcaatatatgattttctttgtaaaaagatggttgtccatgtagtttgtcaatcacatt 36352492  T
Q  124 gatgttcaaataacatt 140  Q
    |||||||||||||||||    
T  36352491 gatgttcaaataacatt 36352475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 15 - 102
Target Start/End: Complemental strand, 40854671 - 40854584
Alignment:
Q  15 tcatactcgtattatacttttactttccctctctattactttgatatttgtgtcaatacataattttctttgtaaaaatgtggttgtc 102  Q
    ||||||||  |||||| |||||||||| ||||||||| ||||||| |||||| ||| ||||| |||||||||||||||| ||||||||    
T  40854671 tcatactcacattatatttttactttctctctctattgctttgatttttgtgccaacacatacttttctttgtaaaaatatggttgtc 40854584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 25 - 136
Target Start/End: Original strand, 26018105 - 26018216
Alignment:
Q  25 attatacttttactttccctctctattactttgatatttgtgtcaatacataattttctttgtaaaaatgtggttgtccatttgattgtcaagtaaattg 124  Q
    |||||| |||||||||| |||||||||||||| || ||| |   |||||||| |||||||| ||||||| || ||||| |||| ||||||||| |||| |    
T  26018105 attatatttttactttctctctctattactttaatttttatacaaatacatacttttctttataaaaatatgattgtctatttaattgtcaagcaaatag 26018204  T
Q  125 atgttcaaataa 136  Q
    | ||||||||||    
T  26018205 acgttcaaataa 26018216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 11 - 91
Target Start/End: Original strand, 31445368 - 31445448
Alignment:
Q  11 tttttcatactcgtattatacttttactttccctctctattactttgatatttgtgtcaatacataattttctttgtaaaa 91  Q
    ||||||||||||  |||||| |||||||||| ||||||||| ||||||| |||||||||||   | |||||||||||||||    
T  31445368 tttttcatactcacattatatttttactttctctctctattgctttgatttttgtgtcaatcactcattttctttgtaaaa 31445448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 15 - 138
Target Start/End: Complemental strand, 41590099 - 41589979
Alignment:
Q  15 tcatactcgtattatacttttactttccctctctattactttgatatttgtgtcaatacataattttctttgtaaaaatgtggttgtccatttgattgtc 114  Q
    |||||||| | ||||| ||||||||||  | |||||||||||||| |||||| ||||||||| ||||| || ||||||| || ||||| ||||| |||||    
T  41590099 tcatactcatcttatatttttactttctttttctattactttgatttttgtgccaatacatatttttccttataaaaatatgattgtctatttg-ttgtc 41590001  T
Q  115 aagtaaattgatgttcaaataaca 138  Q
    ||  ||||  ||||||||||||||    
T  41590000 aaacaaat--atgttcaaataaca 41589979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 24 - 117
Target Start/End: Complemental strand, 46260099 - 46260006
Alignment:
Q  24 tattatacttttactttccctctctattactttgatatttgtgtcaatacataattttctttgtaaaaatgtggttgtccatttgattgtcaag 117  Q
    ||||||| |||||||||| || |||||||||||| | || ||  ||||||||| |||||||||||||||  ||||| || |||||||| |||||    
T  46260099 tattatatttttactttctctttctattactttggttttcgtaccaatacatatttttctttgtaaaaacatggttatctatttgattctcaag 46260006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 79 - 147
Target Start/End: Complemental strand, 5174503 - 5174435
Alignment:
Q  79 tttctttgtaaaaatgtggttgtccatttgattgtcaagtaaattgatgttcaaataacattactcatt 147  Q
    ||||||||||||||| |||||||| | | |||| |||| ||||| |||||||||||||||| |||||||    
T  5174503 tttctttgtaaaaatatggttgtcaaatagattatcaaataaatagatgttcaaataacataactcatt 5174435  T

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Target: chr7; HSP #17
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 25 - 144
Target Start/End: Original strand, 9363452 - 9363569
Alignment:
Q  25 attatacttttactttccctctctattactttgatatttgtgtcaatacataattttctttgtaaaaatgtggttgtccatttgattgtcaagtaaattg 124  Q
    |||||| ||| |||||| ||||| ||||||||||| || || |||||||||| |||||||||||||||    ||||| || ||| |||||||  ||||      
T  9363452 attatattttgactttctctctccattactttgattttcgtatcaatacatacttttctttgtaaaaa--cagttgttcagttggttgtcaaacaaatga 9363549  T
Q  125 atgttcaaataacattactc 144  Q
    |||||||||||||| |||||    
T  9363550 atgttcaaataacactactc 9363569  T

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Target: chr7; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 43 - 140
Target Start/End: Complemental strand, 34108847 - 34108748
Alignment:
Q  43 ctctctattactttgatatttgtgtcaatacataattttc-tttgtaaaaatgtgg-ttgtccatttgattgtcaagtaaattgatgttcaaataacatt 140  Q
    ||||||| | ||||||| ||||||||||||||| |||||| ||| ||||||  ||| |||||||| || |||||||  | ||||||||||||||||||||    
T  34108847 ctctctactgctttgatttttgtgtcaatacatgattttcttttttaaaaagatggtttgtccatgtggttgtcaatcacattgatgttcaaataacatt 34108748  T

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Target: chr7; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 43 - 102
Target Start/End: Original strand, 35207583 - 35207642
Alignment:
Q  43 ctctctattactttgatatttgtgtcaatacataattttctttgtaaaaatgtggttgtc 102  Q
    ||||||||| ||||||||||||||||||||| | ||||| ||||||||| | ||||||||    
T  35207583 ctctctattgctttgatatttgtgtcaatacttcattttatttgtaaaattttggttgtc 35207642  T

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Target: chr7; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 15 - 90
Target Start/End: Original strand, 41018718 - 41018793
Alignment:
Q  15 tcatactcgtattatacttttactttccctctctattactttgatatttgtgtcaatacataattttctttgtaaa 90  Q
    ||||||||  |||||| |||||||||| ||||||||||||||| | ||||||| ||||| |  |||||||||||||    
T  41018718 tcatactcacattatatttttactttctctctctattactttggtttttgtgttaatacctctttttctttgtaaa 41018793  T

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Target: chr7; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 15 - 90
Target Start/End: Complemental strand, 43159591 - 43159517
Alignment:
Q  15 tcatactcgtattatacttttactttccctctctattactttgatatttgtgtcaatacataattttctttgtaaa 90  Q
    |||||||||||||||| |||||||||| ||||||||| ||||| | ||||| ||||||| |  |||||||||||||    
T  43159591 tcatactcgtattatatttttactttctctctctattgctttggt-tttgtatcaatacctctttttctttgtaaa 43159517  T

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Target: chr7; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 15 - 93
Target Start/End: Original strand, 4292482 - 4292560
Alignment:
Q  15 tcatactcgtattatacttttactttccctctctattactttgatatttgtgtcaatacataattttctttgtaaaaat 93  Q
    ||||||||  |||||  |||||||||| ||||||||| ||||||| |||||  |||||  |||||||||||||||||||    
T  4292482 tcatactcacattatgtttttactttctctctctattgctttgatttttgtaccaatatttaattttctttgtaaaaat 4292560  T

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Target: chr7; HSP #23
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 35 - 102
Target Start/End: Complemental strand, 43081886 - 43081820
Alignment:
Q  35 tactttccctctctattactttgatatttgtgtcaatacataattttctttgtaaaaatgtggttgtc 102  Q
    ||||||| ||||||||| |||| |||||||||||| ||| ||| ||||||||| | ||||||||||||    
T  43081886 tactttctctctctattgctttaatatttgtgtcactacctaaatttctttgt-ataatgtggttgtc 43081820  T

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Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 69
Target Start/End: Original strand, 3148801 - 3148835
Alignment:
Q  35 tactttccctctctattactttgatatttgtgtca 69  Q
    ||||||| |||||||||||||||||||||||||||    
T  3148801 tactttctctctctattactttgatatttgtgtca 3148835  T

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Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 99
Target Start/End: Complemental strand, 19562348 - 19562279
Alignment:
Q  32 ttttactttccctct--ctattactttgatatttgtgtcaatacataattttctttgtaaaaatgtggtt 99  Q
    |||||||||| ||||  ||||||||||||  || |||| |||||||| |||||||||||||||| |||||    
T  19562348 ttttactttctctctatctattactttgactttcgtgtaaatacatacttttctttgtaaaaatatggtt 19562279  T

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Target: chr7; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 91
Target Start/End: Original strand, 48062113 - 48062187
Alignment:
Q  17 atactcgtattatacttttactttccctctctattactttgatatttgtgtcaatacataattttctttgtaaaa 91  Q
    |||||| ||||||  |||||||||| |||||||||  |||| | ||||||||||||| | ||||||||| |||||    
T  48062113 atactcatattatgtttttactttctctctctattgttttggtttttgtgtcaatacctcattttctttataaaa 48062187  T

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Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 43 - 104
Target Start/End: Complemental strand, 2008820 - 2008760
Alignment:
Q  43 ctctctattactttgatatttgtgtcaatacataattttctttgtaaaaatgtggttgtcca 104  Q
    ||||||||| |||||||||||||| || ||| ||| ||||||||| | ||||||||||||||    
T  2008820 ctctctattgctttgatatttgtgccactacctaaatttctttgt-ataatgtggttgtcca 2008760  T

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Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 15 - 88
Target Start/End: Original strand, 34978351 - 34978424
Alignment:
Q  15 tcatactcgtattatacttttactttccctctctattactttgatatttgtgtcaatacataattttctttgta 88  Q
    ||||||||  ||||| ||||||||||| ||||||||| ||||| | |||||| || ||| ||| ||||||||||    
T  34978351 tcatactcacattatccttttactttctctctctattgctttgttttttgtgccactacctaaatttctttgta 34978424  T

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Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 75
Target Start/End: Original strand, 27568072 - 27568132
Alignment:
Q  15 tcatactcgtattatacttttactttccctctctattactttgatatttgtgtcaatacat 75  Q
    |||||||| ||||||  |||||||||| |||||||||  |||| | |||||||||||||||    
T  27568072 tcatactcatattatgtttttactttctctctctattgttttggtttttgtgtcaatacat 27568132  T

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Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 43 - 91
Target Start/End: Original strand, 30064521 - 30064569
Alignment:
Q  43 ctctctattactttgatatttgtgtcaatacataattttctttgtaaaa 91  Q
    ||||||||| ||||||| ||  ||||||||||| |||||||||||||||    
T  30064521 ctctctattgctttgattttcatgtcaatacatcattttctttgtaaaa 30064569  T

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Target: chr7; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 91
Target Start/End: Complemental strand, 41189560 - 41189484
Alignment:
Q  15 tcatactcgtattatacttttactttccctctctattactttgatatttgtgtcaatacataattttctttgtaaaa 91  Q
    ||||||||  |||||  |||||||||| ||||||||| ||||  | ||||||||||||| | |||| ||||||||||    
T  41189560 tcatactcacattatctttttactttctctctctattgctttagtttttgtgtcaatacctcatttcctttgtaaaa 41189484  T

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Target: scaffold0687 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0687
Description:

Target: scaffold0687; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 17 - 143
Target Start/End: Original strand, 7116 - 7247
Alignment:
Q  17 atactcgtattatacttttactttccctctctattactttgatatttgtgtcaatacataattttctttgtaaaaatgtggttgtccattt-------ga 109  Q
    |||||| ||||||| |||||||||| ||||||||||||||||||||| ||||||| |||| ||||||||||  ||||||||||||| ||||             
T  7116 atactcatattatatttttactttctctctctattactttgatatttatgtcaatgcatacttttctttgt--aaatgtggttgtcaatttagttgtcat 7213  T
Q  110 ttgtcaagtaaattgatgttcaaataacattact 143  Q
    |||||||| |||||||||||||||||||| ||||    
T  7214 ttgtcaagcaaattgatgttcaaataacactact 7247  T

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Target: scaffold0013 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 25 - 104
Target Start/End: Complemental strand, 94888 - 94809
Alignment:
Q  25 attatacttttactttccctctctattactttgatatttgtgtcaatacataattttctttgtaaaaatgtggttgtcca 104  Q
    |||||| |||||||||| ||||||||||||||||| ||||||  |||||||| |||||||||||||||| | ||||||||    
T  94888 attataattttactttctctctctattactttgatttttgtgctaatacatatttttctttgtaaaaatatagttgtcca 94809  T

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Target: scaffold0662 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0662
Description:

Target: scaffold0662; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 43 - 146
Target Start/End: Original strand, 1227 - 1330
Alignment:
Q  43 ctctctattactttgatatttgtgtcaatacataattttctttgtaaaaatgtggttgtccatttgattgtcaagtaaattgatgttcaaataacattac 142  Q
    ||||||||| ||||| | |||||| ||||| ||| |||||||||||||||| || ||||| || || |||||||  ||| |||||||||||||||||| |    
T  1227 ctctctattgctttggtttttgtgccaatagatacttttctttgtaaaaatatgattgtcaatgtggttgtcaaccaaactgatgttcaaataacattgc 1326  T
Q  143 tcat 146  Q
    ||||    
T  1327 tcat 1330  T

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Target: scaffold0519 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0519
Description:

Target: scaffold0519; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 32 - 91
Target Start/End: Original strand, 11853 - 11912
Alignment:
Q  32 ttttactttccctctctattactttgatatttgtgtcaatacataattttctttgtaaaa 91  Q
    ||||| |||| ||||||||| ||||| | ||||||||||||| | |||||||||||||||    
T  11853 ttttattttctctctctattgctttggtttttgtgtcaatacctcattttctttgtaaaa 11912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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