View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16554_low_98 (Length: 268)
Name: NF16554_low_98
Description: NF16554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16554_low_98 |
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Alignment Details
Target: chr5 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 260
Target Start/End: Complemental strand, 2251804 - 2251545
Alignment:
| Q |
1 |
ttttaattgttgatgttttctttttaaatcgaaccaaaccgagacgaagagtannnnnnnnnnnnnnngtttggtttaagcattttgagggttgtttggt |
100 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
2251804 |
ttttaattgttgatgttttctttttaaatcaaaccaaaccgagacgaagagtatttttaattttttttgtttggtttaagcattttgagggttgtttggt |
2251705 |
T |
|
| Q |
101 |
ttatatatgaaaagtattttattcctaattttgaagcttgtgaaacacaatagaaatagaaaagaccaagtcacataaaacattggtttttggctccaat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2251704 |
ttatatatgaaaagtattttattcctaattttgaagcttgtgaaacacaatagaaatagaaaagaccaagtcacataaaacattggtttttggctccaat |
2251605 |
T |
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| Q |
201 |
cacgtggtcggttaccccttgtttgattctatttctccatccatctttccgttctgtgct |
260 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
2251604 |
cacgtggtcagttaccccttgtttgattctatttctccatccatctttccgttctttgct |
2251545 |
T |
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