View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16554_low_99 (Length: 267)

Name: NF16554_low_99
Description: NF16554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16554_low_99
NF16554_low_99
[»] chr2 (3 HSPs)
chr2 (1-251)||(13017035-13017277)
chr2 (1-161)||(11272274-11272434)
chr2 (23-167)||(1479650-1479794)
[»] chr6 (2 HSPs)
chr6 (1-164)||(1034039-1034202)
chr6 (10-167)||(2921127-2921283)
[»] chr8 (4 HSPs)
chr8 (7-168)||(9936132-9936293)
chr8 (1-167)||(37270024-37270190)
chr8 (1-167)||(42940977-42941143)
chr8 (1-167)||(8273575-8273739)
[»] chr5 (2 HSPs)
chr5 (7-161)||(36988772-36988926)
chr5 (93-149)||(40296232-40296288)
[»] chr1 (2 HSPs)
chr1 (52-167)||(32774336-32774451)
chr1 (55-161)||(4641000-4641106)
[»] chr7 (1 HSPs)
chr7 (7-164)||(42460289-42460445)
[»] chr4 (1 HSPs)
chr4 (8-161)||(2281985-2282139)


Alignment Details
Target: chr2 (Bit Score: 200; Significance: 1e-109; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 251
Target Start/End: Original strand, 13017035 - 13017277
Alignment:
Q  1 attgttgcatgccaaatcaaccaaaaacctttcttatgccttttagagagcacttcactattccaacattcaaattgtgcaaacaagttatgtggagtta 100  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13017035 attgtcgcatgccaaatcaaccaaaaacctttcttatgccttttagagagcacttcactattccaacattcaaattgtgcaaacaagttatgtggagtta 13017134  T
Q  101 tgaaattaatctcaaa-ccaattcaaaattccacgccaaattaaagaggaaacatcacaatgcaagaagttatgtaggatcaaggtgtctaaggttgtaa 199  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         ||||||||||    
T  13017135 tgaaattaatctcaaagccaattcaaaattccacgccaaattaaagaggaaacatcacaatgcaagaagttatgtaggatc---------aaggttgtaa 13017225  T
Q  200 tatgactctcatatgatatacatcaataactacacgtaaagtatgagcaatt 251  Q
    |||||||||||||||||||||||||| ||||||||||||||||||| |||||    
T  13017226 tatgactctcatatgatatacatcaacaactacacgtaaagtatgaccaatt 13017277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 1 - 161
Target Start/End: Complemental strand, 11272434 - 11272274
Alignment:
Q  1 attgttgcatgccaaatcaaccaaaaacctttcttatgccttttagagagcacttcactattccaacattcaaattgtgcaaacaagttatgtggagtta 100  Q
    |||||||||||||||||||||||||| || |||||| |  | |||||    |||||| |||||||||||||||||||  |||| |||||||||| | | |    
T  11272434 attgttgcatgccaaatcaaccaaaaccccttcttaagtatcttagatttaacttcattattccaacattcaaattgcacaaataagttatgtgtaatga 11272335  T
Q  101 tgaaattaatctcaaaccaattcaaaattccacgccaaattaaagaggaaacatcacaatg 161  Q
    | |||| |||||||| ||||||||| || | ||||||||||||||||||||||||||||||    
T  11272334 taaaatgaatctcaagccaattcaagatacaacgccaaattaaagaggaaacatcacaatg 11272274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 23 - 167
Target Start/End: Original strand, 1479650 - 1479794
Alignment:
Q  23 aaaaacctttcttatgccttttagagagcacttcactattccaacattcaaattgtgcaaacaagttatgtggagttatgaaattaatctcaaaccaatt 122  Q
    ||||||||||| | || |||||||||| | | ||| ||| |||||| ||||||||  ||  ||| ||||| ||||| || ||||||||| ||| ||||||    
T  1479650 aaaaacctttcctttgtcttttagagaccgcctcattataccaacactcaaattgcacatccaaattatgaggagtaataaaattaatcccaagccaatt 1479749  T
Q  123 caaaattccacgccaaattaaagaggaaacatcacaatgcaagaa 167  Q
     |||||     |||||||||||||||| ||||||||||| |||||    
T  1479750 taaaataaggtgccaaattaaagaggagacatcacaatgtaagaa 1479794  T

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Target: chr6 (Bit Score: 72; Significance: 8e-33; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 1 - 164
Target Start/End: Complemental strand, 1034202 - 1034039
Alignment:
Q  1 attgttgcatgccaaatcaaccaaaaacctttcttatgccttttagagagcacttcactattccaacattcaaattgtgcaaacaagttatgtggagtta 100  Q
    ||||| || ||||||||||||||||||||||||||||| || ||||| | ||| ||| || ||||||||||||||||| |   ||||||||||||||| |    
T  1034202 attgtcgcgtgccaaatcaaccaaaaacctttcttatgtctcttagaaaccacctcattactccaacattcaaattgtacggccaagttatgtggagtaa 1034103  T
Q  101 tgaaattaatctcaaaccaattcaaaattccacgccaaattaaagaggaaacatcacaatgcaa 164  Q
    | || |||| | ||| | |||| |||||||||||||||||||| ||||| ||||||||||||||    
T  1034102 taaagttaaccccaagctaatttaaaattccacgccaaattaaggaggagacatcacaatgcaa 1034039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 10 - 167
Target Start/End: Original strand, 2921127 - 2921283
Alignment:
Q  10 tgccaaatcaaccaaaaacctttcttatgccttttagagagcacttcactattccaacattcaaattgtgcaaacaagttatgtggagttatgaaattaa 109  Q
    |||||||||||||||||| | ||||||||||| || ||   || ||||| |||||||||  |||| || |||||||||||||| ||||| || || ||||    
T  2921127 tgccaaatcaaccaaaaatccttcttatgcctcttcgattcca-ttcaccattccaacaaacaaaatgagcaaacaagttatgaggagtaataaagttaa 2921225  T
Q  110 tctcaaaccaattcaaaattccacgccaaattaaagaggaaacatcacaatgcaagaa 167  Q
    || | | |||||||||||| | |||||| |||||  |||||||||||||||| |||||    
T  2921226 tccctagccaattcaaaatacgacgccagattaagaaggaaacatcacaatgtaagaa 2921283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 70; Significance: 1e-31; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 7 - 168
Target Start/End: Complemental strand, 9936293 - 9936132
Alignment:
Q  7 gcatgccaaatcaaccaaaaacctttcttatgccttttagagagcacttcactattccaacattcaaattgtgcaaacaagttatgtggagttatgaaat 106  Q
    ||||||||||||||| ||||||||||| || ||||| | |||| ||| ||| |||||||||| ||||| || |||||||| ||||| || || || ||||    
T  9936293 gcatgccaaatcaacaaaaaacctttcctaagccttctcgagaccacctcattattccaacactcaaaatgcgcaaacaaattatgaggggtaataaaat 9936194  T
Q  107 taatctcaaaccaattcaaaattccacgccaaattaaagaggaaacatcacaatgcaagaag 168  Q
    | ||| | | |||||| ||||| |||||||||||||||||||| ||||||||||||||||||    
T  9936193 tcatcccgagccaatttaaaataccacgccaaattaaagaggagacatcacaatgcaagaag 9936132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 167
Target Start/End: Original strand, 37270024 - 37270190
Alignment:
Q  1 attgttgcatgccaaatcaaccaaaaacctttcttatgccttttagagagcacttcactattccaacattcaaattgtgcaaacaagttatgtggagtta 100  Q
    ||||||||||||||||||| |||||  ||||| ||  | ||||| ||   ||| |||||||||||||| ||||||||  |||||| |||||| |||||||    
T  37270024 attgttgcatgccaaatcatccaaaccccttttttgagtcttttggaactcacctcactattccaacaatcaaattgcacaaacaggttatgcggagtta 37270123  T
Q  101 tgaaattaatctcaaaccaattcaaaattccacgccaaattaaagaggaaacatcacaatgcaagaa 167  Q
      |||||||| || | ||||||||||| |||||||||||| ||  | || |||||||||||||||||    
T  37270124 caaaattaatgtctagccaattcaaaactccacgccaaatcaactaagacacatcacaatgcaagaa 37270190  T

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Target: chr8; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 167
Target Start/End: Complemental strand, 42941143 - 42940977
Alignment:
Q  1 attgttgcatgccaaatcaaccaaaaacctttcttatgccttttagagagcacttcactattccaacattcaaattgtgcaaacaagttatgtggagtta 100  Q
    ||||||||||| ||||||| |||||  ||||| ||  | ||||| ||   ||| |||||||||||||| ||||||||  |||||| |||||| |||||||    
T  42941143 attgttgcatgtcaaatcatccaaaccccttttttgagtcttttggaactcacctcactattccaacaatcaaattgcacaaacaggttatgcggagtta 42941044  T
Q  101 tgaaattaatctcaaaccaattcaaaattccacgccaaattaaagaggaaacatcacaatgcaagaa 167  Q
      |||||||| || | ||||||||||| |||||||||||  || || || |||||||||||||||||    
T  42941043 caaaattaatgtctagccaattcaaaactccacgccaaagcaacgaagacacatcacaatgcaagaa 42940977  T

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Target: chr8; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 167
Target Start/End: Complemental strand, 8273739 - 8273575
Alignment:
Q  1 attgttgcatgccaaatcaaccaaaaacctttcttatgccttttagagagcacttcactattccaacattcaaattgtgcaaacaagttatgtggagtta 100  Q
    ||||| |||||||||||||||||||| || || ||| ||||||| ||| | || ||||||||||||||  | || ||  |||| |  |  |||||||| |    
T  8273739 attgtcgcatgccaaatcaaccaaaacccctttttaagccttttggagggaacctcactattccaacaacccaaatgcacaaaaa--tcgtgtggagtaa 8273642  T
Q  101 tgaaattaatctcaaaccaattcaaaattccacgccaaattaaagaggaaacatcacaatgcaagaa 167  Q
    | ||||| |||||||||||||||||||| ||||| |||||||| ||||  |||||| ||||||||||    
T  8273641 taaaattgatctcaaaccaattcaaaataccacgtcaaattaacgaggtcacatcaaaatgcaagaa 8273575  T

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Target: chr5 (Bit Score: 67; Significance: 8e-30; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 7 - 161
Target Start/End: Complemental strand, 36988926 - 36988772
Alignment:
Q  7 gcatgccaaatcaaccaaaaacctttcttatgccttttagagagcacttcactattccaacattcaaattgtgcaaacaagttatgtggagttatgaaat 106  Q
    |||||||||||||||||||| ||||| ||| |||| || |  | |||||||||||||||||| ||||| ||  |||| | |||||||||||| || ||||    
T  36988926 gcatgccaaatcaaccaaaaccctttattaagcctcttcggcatcacttcactattccaacaatcaaaatggacaaaaaggttatgtggagtgataaaat 36988827  T
Q  107 taatctcaaaccaattcaaaattccacgccaaattaaagaggaaacatcacaatg 161  Q
    ||||||| |||||||||||||| |  |||||||| |||||||||| |||||||||    
T  36988826 taatctccaaccaattcaaaatccggcgccaaatcaaagaggaaatatcacaatg 36988772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 93 - 149
Target Start/End: Original strand, 40296232 - 40296288
Alignment:
Q  93 tggagttatgaaattaatctcaaaccaattcaaaattccacgccaaattaaagagga 149  Q
    |||||| |||||||||||||||| ||||| ||| | | |||||||||||| ||||||    
T  40296232 tggagtaatgaaattaatctcaagccaatccaagacttcacgccaaattagagagga 40296288  T

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Target: chr1 (Bit Score: 56; Significance: 3e-23; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 52 - 167
Target Start/End: Original strand, 32774336 - 32774451
Alignment:
Q  52 acttcactattccaacattcaaattgtgcaaacaagttatgtggagttatgaaattaatctcaaaccaattcaaaattccacgccaaattaaagaggaaa 151  Q
    ||||| ||||||||||| || |||||   |||||||||||||||||| |  ||||||||||||| ||||||||| || |||||||||||||| ||||| |    
T  32774336 acttctctattccaacaatcgaattgcataaacaagttatgtggagtaacaaaattaatctcaagccaattcaatatgccacgccaaattaacgaggata 32774435  T
Q  152 catcacaatgcaagaa 167  Q
    |||||||||| |||||    
T  32774436 catcacaatgtaagaa 32774451  T

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Target: chr1; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 55 - 161
Target Start/End: Original strand, 4641000 - 4641106
Alignment:
Q  55 tcactattccaacattcaaattgtgcaaacaagttatgtggagttatgaaattaatctcaaaccaattcaaaattccacgccaaattaaagaggaaacat 154  Q
    |||| ||||||||||||||| ||  |||| || ||||| ||||| ||||| |||  ||||| ||||||||| ||| |||| |||||||||||||||||||    
T  4641000 tcaccattccaacattcaaaatgaacaaataaattatgaggagtaatgaagttagactcaagccaattcaagatttcacgtcaaattaaagaggaaacat 4641099  T
Q  155 cacaatg 161  Q
    |||||||    
T  4641100 cacaatg 4641106  T

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Target: chr7 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 7 - 164
Target Start/End: Original strand, 42460289 - 42460445
Alignment:
Q  7 gcatgccaaatcaaccaaaaacctttcttatgccttttagagagcacttcactattccaacattcaaattgtgcaaacaagttatgtggagttatgaaat 106  Q
    ||||||||||||||| ||||||||||| ||  |||| | |||| ||| ||| |||||||||| ||||| || |||||||| ||||| || || || ||||    
T  42460289 gcatgccaaatcaacaaaaaacctttcctaatccttctcgagaccacctcattattccaacactcaaaatgcgcaaacaaattatgaggggtaataaaat 42460388  T
Q  107 taatctcaaaccaattcaaaattccacgccaaattaaagaggaaacatcacaatgcaa 164  Q
    | ||  | | ||||||  |||| |||||||||||||||||||| | ||||||||||||    
T  42460389 tcattccgagccaatt-taaataccacgccaaattaaagaggagaaatcacaatgcaa 42460445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 161
Target Start/End: Complemental strand, 2282139 - 2281985
Alignment:
Q  8 catgccaaatcaaccaaaaa-cctttcttatgccttttagagagcacttcactattccaacattcaaattgtgcaaacaagttatgtggagttatgaaat 106  Q
    |||||||||||||| ||||| |||||| |||||||| || | |  || ||| ||||| |||| ||||||||  ||||||| ||||| ||||| || ||||    
T  2282139 catgccaaatcaacaaaaaaacctttcctatgccttctaaaaacaacctcattattctaacaatcaaattgcacaaacaaattatgaggagtgataaaat 2282040  T
Q  107 taatctcaaaccaattcaaaattccacgccaaattaaagaggaaacatcacaatg 161  Q
    | ||  | | |||||| ||||| | ||||||||||   ||||| |||||||||||    
T  2282039 tgattccgagccaatttaaaatccgacgccaaatttgtgaggagacatcacaatg 2281985  T

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