View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16555_high_15 (Length: 318)

Name: NF16555_high_15
Description: NF16555
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16555_high_15
NF16555_high_15
[»] chr8 (16 HSPs)
chr8 (164-315)||(7413436-7413587)
chr8 (24-135)||(7412959-7413070)
chr8 (18-86)||(28875558-28875626)
chr8 (18-86)||(32425420-32425488)
chr8 (18-82)||(2871500-2871564)
chr8 (18-86)||(6029117-6029185)
chr8 (18-86)||(22200813-22200881)
chr8 (18-86)||(34900364-34900432)
chr8 (18-86)||(37372763-37372831)
chr8 (18-86)||(13422676-13422744)
chr8 (18-82)||(16385093-16385157)
chr8 (18-86)||(32878113-32878181)
chr8 (18-86)||(36484481-36484549)
chr8 (26-86)||(45216215-45216275)
chr8 (19-86)||(4246983-4247050)
chr8 (24-82)||(3892481-3892539)
[»] chr4 (19 HSPs)
chr4 (18-103)||(38491754-38491839)
chr4 (18-86)||(31945760-31945828)
chr4 (18-86)||(1177496-1177564)
chr4 (18-86)||(8063090-8063158)
chr4 (18-86)||(42629988-42630056)
chr4 (18-86)||(52122210-52122278)
chr4 (18-86)||(5325010-5325078)
chr4 (18-86)||(19739166-19739234)
chr4 (18-86)||(40694587-40694655)
chr4 (18-86)||(43509430-43509498)
chr4 (19-86)||(3402567-3402634)
chr4 (63-106)||(36944250-36944293)
chr4 (18-76)||(258627-258685)
chr4 (18-76)||(46431483-46431541)
chr4 (18-76)||(53324732-53324790)
chr4 (18-86)||(31227548-31227615)
chr4 (18-86)||(39958319-39958387)
chr4 (18-86)||(42472159-42472227)
chr4 (18-54)||(49470805-49470841)
[»] scaffold0177 (1 HSPs)
scaffold0177 (18-86)||(24890-24958)
[»] chr6 (5 HSPs)
chr6 (18-94)||(31186939-31187015)
chr6 (18-103)||(32018712-32018797)
chr6 (18-86)||(1035809-1035877)
chr6 (18-86)||(234832-234900)
chr6 (18-76)||(13607299-13607357)
[»] chr5 (16 HSPs)
chr5 (18-86)||(34032882-34032950)
chr5 (18-86)||(39689721-39689789)
chr5 (13-86)||(30919197-30919270)
chr5 (18-86)||(1638786-1638854)
chr5 (18-86)||(10657503-10657571)
chr5 (18-86)||(25750122-25750190)
chr5 (18-86)||(30776828-30776896)
chr5 (18-86)||(32707172-32707240)
chr5 (24-83)||(9793357-9793416)
chr5 (24-86)||(14836845-14836907)
chr5 (18-86)||(26793985-26794053)
chr5 (18-106)||(27938675-27938763)
chr5 (18-86)||(41392240-41392308)
chr5 (31-86)||(11907836-11907891)
chr5 (24-113)||(17137690-17137779)
chr5 (18-86)||(7977706-7977774)
[»] chr3 (21 HSPs)
chr3 (18-86)||(1529078-1529146)
chr3 (18-86)||(7328271-7328339)
chr3 (18-86)||(40499441-40499509)
chr3 (18-86)||(52684960-52685028)
chr3 (18-109)||(1678653-1678744)
chr3 (19-86)||(37996294-37996361)
chr3 (18-108)||(28705794-28705884)
chr3 (18-94)||(213033-213109)
chr3 (18-86)||(21005780-21005848)
chr3 (18-86)||(10224143-10224211)
chr3 (18-106)||(22289209-22289297)
chr3 (18-86)||(25936071-25936139)
chr3 (18-86)||(35390402-35390470)
chr3 (19-86)||(19877752-19877819)
chr3 (24-82)||(19421957-19422015)
chr3 (18-103)||(39664934-39665019)
chr3 (18-86)||(22610270-22610338)
chr3 (18-86)||(28882073-28882141)
chr3 (18-82)||(42230413-42230477)
chr3 (18-54)||(48123884-48123920)
chr3 (16-76)||(48333456-48333516)
[»] chr1 (17 HSPs)
chr1 (18-86)||(28948199-28948267)
chr1 (18-82)||(30324762-30324826)
chr1 (18-86)||(36363058-36363126)
chr1 (18-111)||(6915832-6915925)
chr1 (18-86)||(3427902-3427970)
chr1 (18-86)||(20409104-20409172)
chr1 (18-82)||(25257658-25257722)
chr1 (18-86)||(37104695-37104763)
chr1 (18-86)||(38331494-38331562)
chr1 (18-86)||(52894696-52894764)
chr1 (18-103)||(8133224-8133309)
chr1 (25-78)||(24589355-24589408)
chr1 (18-86)||(32380592-32380660)
chr1 (18-86)||(37346349-37346417)
chr1 (18-103)||(2472237-2472321)
chr1 (18-106)||(29862317-29862405)
chr1 (18-82)||(34431955-34432019)
[»] chr7 (20 HSPs)
chr7 (18-85)||(38065231-38065298)
chr7 (18-86)||(9249729-9249797)
chr7 (18-86)||(9283279-9283347)
chr7 (18-86)||(25970136-25970204)
chr7 (18-86)||(40096714-40096782)
chr7 (31-86)||(39521633-39521688)
chr7 (18-86)||(1042573-1042641)
chr7 (18-86)||(4292213-4292281)
chr7 (18-86)||(12103488-12103556)
chr7 (18-86)||(19511211-19511279)
chr7 (18-86)||(26973574-26973642)
chr7 (18-86)||(27554850-27554918)
chr7 (18-86)||(34122138-34122206)
chr7 (18-86)||(42897447-42897515)
chr7 (18-86)||(47237739-47237807)
chr7 (18-86)||(48154566-48154634)
chr7 (18-86)||(554425-554493)
chr7 (16-52)||(11058948-11058984)
chr7 (18-82)||(21180354-21180418)
chr7 (18-54)||(33454642-33454678)
[»] chr2 (14 HSPs)
chr2 (24-82)||(12206689-12206747)
chr2 (18-86)||(3545094-3545162)
chr2 (18-82)||(4562306-4562370)
chr2 (18-94)||(5371618-5371694)
chr2 (18-86)||(6496665-6496733)
chr2 (18-104)||(5588559-5588645)
chr2 (18-86)||(7877180-7877248)
chr2 (18-76)||(2319812-2319870)
chr2 (18-76)||(4169523-4169581)
chr2 (18-76)||(18301603-18301661)
chr2 (18-86)||(8482446-8482514)
chr2 (18-86)||(10574018-10574086)
chr2 (18-54)||(21105009-21105045)
chr2 (18-86)||(28746192-28746260)
[»] scaffold0250 (1 HSPs)
scaffold0250 (18-86)||(6185-6253)


Alignment Details
Target: chr8 (Bit Score: 148; Significance: 4e-78; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 164 - 315
Target Start/End: Original strand, 7413436 - 7413587
Alignment:
Q  164 aaggaccgcatcgattggggttccactttccactttggtgacctgcagcaataattgtctactagaaataagtataataccaaaaatgcattatttactt 263  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7413436 aaggaccgcatcgtttggggttccactttccactttggtgacctgcagcaataattgtctactagaaataagtataataccaaaaatgcattatttactt 7413535  T
Q  264 ttgtagaccagcagcactatttgtctttatgatcgtctattcgtcttgtctt 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7413536 ttgtagaccagcagcactatttgtctttatgatcgtctattcgtcttgtctt 7413587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 24 - 135
Target Start/End: Original strand, 7412959 - 7413070
Alignment:
Q  24 tatcttaatttttgaaatttttccatatcgaaatattgatgcagtatcgtatccgtatcgtatgtcatatcgggatttcataggttaaatttgttcacta 123  Q
    |||||||||||||||| ||||||| ||||||| |||||||||||||||||||||  ||||||||||||||| ||| |||||||||||||||||||||| |    
T  7412959 tatcttaatttttgaattttttccgtatcgaagtattgatgcagtatcgtatccacatcgtatgtcatatccggacttcataggttaaatttgttcacaa 7413058  T
Q  124 catgtctacatg 135  Q
    ||| ||||||||    
T  7413059 catatctacatg 7413070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 18 - 86
Target Start/End: Complemental strand, 28875626 - 28875558
Alignment:
Q  18 gtatcatatcttaatttttgaaatttttccatatcgaaatattgatgcagtatcgtatccgtatcgtat 86  Q
    ||||| |||||| ||||||||||||||||| |||||   ||| ||||||||||||||||||||||||||    
T  28875626 gtatcgtatcttgatttttgaaatttttccgtatcggcgtatcgatgcagtatcgtatccgtatcgtat 28875558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 18 - 86
Target Start/End: Original strand, 32425420 - 32425488
Alignment:
Q  18 gtatcatatcttaatttttgaaatttttccatatcgaaatattgatgcagtatcgtatccgtatcgtat 86  Q
    ||||| |||||| ||||||||||||||||| |||||  |||||| ||||||||| ||||||||||||||    
T  32425420 gtatcgtatcttgatttttgaaatttttccgtatcggtatattggtgcagtatcatatccgtatcgtat 32425488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 18 - 82
Target Start/End: Complemental strand, 2871564 - 2871500
Alignment:
Q  18 gtatcatatcttaatttttgaaatttttccatatcgaaatattgatgcagtatcgtatccgtatc 82  Q
    ||||| |||||| ||||||||||||||||| ||||||  ||| | ||||||||||||||||||||    
T  2871564 gtatcgtatcttgatttttgaaatttttccgtatcgacgtatcggtgcagtatcgtatccgtatc 2871500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 18 - 86
Target Start/End: Original strand, 6029117 - 6029185
Alignment:
Q  18 gtatcatatcttaatttttgaaatttttccatatcgaaatattgatgcagtatcgtatccgtatcgtat 86  Q
    ||||| |||||| ||||||||||||||||  ||||||  ||| | ||||||||||||||||||||||||    
T  6029117 gtatcgtatcttgatttttgaaatttttctgtatcgacgtatcggtgcagtatcgtatccgtatcgtat 6029185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 18 - 86
Target Start/End: Complemental strand, 22200881 - 22200813
Alignment:
Q  18 gtatcatatcttaatttttgaaatttttccatatcgaaatattgatgcagtatcgtatccgtatcgtat 86  Q
    ||||| |||||| ||||||||||||||||| |||||   ||| | ||||||||||||||||||||||||    
T  22200881 gtatcgtatcttgatttttgaaatttttccgtatcggcgtatcggtgcagtatcgtatccgtatcgtat 22200813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 18 - 86
Target Start/End: Complemental strand, 34900432 - 34900364
Alignment:
Q  18 gtatcatatcttaatttttgaaatttttccatatcgaaatattgatgcagtatcgtatccgtatcgtat 86  Q
    ||||| |||||| |||||||||||||| || ||||||  ||| | ||||||||||||||||||||||||    
T  34900432 gtatcgtatcttgatttttgaaattttgccgtatcgacgtatcggtgcagtatcgtatccgtatcgtat 34900364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 18 - 86
Target Start/End: Original strand, 37372763 - 37372831
Alignment:
Q  18 gtatcatatcttaatttttgaaatttttccatatcgaaatattgatgcagtatcgtatccgtatcgtat 86  Q
    ||||| |||||| |||||||||||||| |  |||| | |||||||||||||||||||||||||| ||||    
T  37372763 gtatcgtatcttgatttttgaaattttcctgtatcaacatattgatgcagtatcgtatccgtattgtat 37372831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 86
Target Start/End: Original strand, 13422676 - 13422744
Alignment:
Q  18 gtatcatatcttaatttttgaaatttttccatatcgaaatattgatgcagtatcgtatccgtatcgtat 86  Q
    ||||| |||||| |||||| ||| ||||||||||||   ||| | ||||||||||||||||||||||||    
T  13422676 gtatcgtatcttgatttttaaaaattttccatatcggcgtatcggtgcagtatcgtatccgtatcgtat 13422744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 82
Target Start/End: Original strand, 16385093 - 16385157
Alignment:
Q  18 gtatcatatcttaatttttgaaatttttccatatcgaaatattgatgcagtatcgtatccgtatc 82  Q
    ||||| |||||| ||||||||||||||||| |||||   ||| | ||||||||||||||||||||    
T  16385093 gtatcgtatcttgatttttgaaatttttccgtatcggcgtatcggtgcagtatcgtatccgtatc 16385157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 86
Target Start/End: Original strand, 32878113 - 32878181
Alignment:
Q  18 gtatcatatcttaatttttgaaatttttccatatcgaaatattgatgcagtatcgtatccgtatcgtat 86  Q
    ||||| |||||| |||||||||||||| || |||||   ||| | ||||||||||||||||||||||||    
T  32878113 gtatcgtatcttgatttttgaaattttcccgtatcggcgtatcggtgcagtatcgtatccgtatcgtat 32878181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 86
Target Start/End: Original strand, 36484481 - 36484549
Alignment:
Q  18 gtatcatatcttaatttttgaaatttttccatatcgaaatattgatgcagtatcgtatccgtatcgtat 86  Q
    ||||| |||||| |||||||||| |||||| ||||||  |||   ||||||||||||||||||||||||    
T  36484481 gtatcgtatcttgatttttgaaaattttccgtatcgacgtatcagtgcagtatcgtatccgtatcgtat 36484549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 26 - 86
Target Start/End: Complemental strand, 45216275 - 45216215
Alignment:
Q  26 tcttaatttttgaaatttttccatatcgaaatattgatgcagtatcgtatccgtatcgtat 86  Q
    |||| |||||||||||||||| |||||||  |||   ||||||||||||||||||||||||    
T  45216275 tcttgatttttgaaatttttctatatcgacgtatcagtgcagtatcgtatccgtatcgtat 45216215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 19 - 86
Target Start/End: Original strand, 4246983 - 4247050
Alignment:
Q  19 tatcatatcttaatttttgaaatttttccatatcgaaatattgatgcagtatcgtatccgtatcgtat 86  Q
    |||| |||||| |||||||||||||| || ||||||  ||| | |||||||||||||| |||||||||    
T  4246983 tatcgtatcttgatttttgaaattttgccgtatcgacgtatcggtgcagtatcgtatctgtatcgtat 4247050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 24 - 82
Target Start/End: Original strand, 3892481 - 3892539
Alignment:
Q  24 tatcttaatttttgaaatttttccatatcgaaatattgatgcagtatcgtatccgtatc 82  Q
    |||||||||||||||||||||||| |||| | |||| | |||| |||||||| ||||||    
T  3892481 tatcttaatttttgaaatttttccgtatcaacatatcggtgcaatatcgtattcgtatc 3892539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 18 - 103
Target Start/End: Complemental strand, 38491839 - 38491754
Alignment:
Q  18 gtatcatatcttaatttttgaaatttttccatatcgaaatattgatgcagtatcgtatccgtatcgtatgtcatatcgggatttca 103  Q
    ||||| |||||| ||||||||||||||||| ||||||  ||| | |||||||||||||||||||||||| || |||| || |||||    
T  38491839 gtatcgtatcttgatttttgaaatttttccgtatcgacgtatcggtgcagtatcgtatccgtatcgtatctcgtatccgggtttca 38491754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 18 - 86
Target Start/End: Complemental strand, 31945828 - 31945760
Alignment:
Q  18 gtatcatatcttaatttttgaaatttttccatatcgaaatattgatgcagtatcgtatccgtatcgtat 86  Q
    ||||| ||||||||||||||||||||| || ||||||  ||| | ||||||||||||||||||||||||    
T  31945828 gtatcgtatcttaatttttgaaattttcccgtatcgacgtatcggtgcagtatcgtatccgtatcgtat 31945760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 18 - 86
Target Start/End: Original strand, 1177496 - 1177564
Alignment:
Q  18 gtatcatatcttaatttttgaaatttttccatatcgaaatattgatgcagtatcgtatccgtatcgtat 86  Q
    ||||| |||||| ||||||||||||||||| ||||||  |||   ||||||||||||||||||||||||    
T  1177496 gtatcgtatcttgatttttgaaatttttccgtatcgacgtatcagtgcagtatcgtatccgtatcgtat 1177564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 18 - 86
Target Start/End: Complemental strand, 8063158 - 8063090
Alignment:
Q  18 gtatcatatcttaatttttgaaatttttccatatcgaaatattgatgcagtatcgtatccgtatcgtat 86  Q
    ||||| |||||| |||||||||||||| || ||||||  ||| | ||||||||||||||||||||||||    
T  8063158 gtatcgtatcttgatttttgaaattttgccgtatcgacgtatcggtgcagtatcgtatccgtatcgtat 8063090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 18 - 86
Target Start/End: Complemental strand, 42630056 - 42629988
Alignment:
Q  18 gtatcatatcttaatttttgaaatttttccatatcgaaatattgatgcagtatcgtatccgtatcgtat 86  Q
    ||||| |||||||||||||||||||||||| ||||||  ||| | ||||||||||||||  ||||||||    
T  42630056 gtatcgtatcttaatttttgaaatttttccgtatcgacgtatcggtgcagtatcgtatctatatcgtat 42629988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 18 - 86
Target Start/End: Complemental strand, 52122278 - 52122210
Alignment:
Q  18 gtatcatatcttaatttttgaaatttttccatatcgaaatattgatgcagtatcgtatccgtatcgtat 86  Q
    ||||| |||||| ||||||||||||||||| |||||   ||| | ||||||||||||||||||||||||    
T  52122278 gtatcgtatcttgatttttgaaatttttccgtatcggcgtatcggtgcagtatcgtatccgtatcgtat 52122210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 86
Target Start/End: Complemental strand, 5325078 - 5325010
Alignment:
Q  18 gtatcatatcttaatttttgaaatttttccatatcgaaatattgatgcagtatcgtatccgtatcgtat 86  Q
    ||||| |||||| ||||||||||||||| | |||||   ||| | ||||||||||||||||||||||||    
T  5325078 gtatcgtatcttgatttttgaaattttttcgtatcggcgtatcggtgcagtatcgtatccgtatcgtat 5325010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 86
Target Start/End: Original strand, 19739166 - 19739234
Alignment:
Q  18 gtatcatatcttaatttttgaaatttttccatatcgaaatattgatgcagtatcgtatccgtatcgtat 86  Q
    ||||| |||||| ||||||||||||||||| |||||   ||| | |||||| |||||||||||||||||    
T  19739166 gtatcgtatcttgatttttgaaatttttccgtatcggcgtatcggtgcagtgtcgtatccgtatcgtat 19739234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 86
Target Start/End: Original strand, 40694587 - 40694655
Alignment:
Q  18 gtatcatatcttaatttttgaaatttttccatatcgaaatattgatgcagtatcgtatccgtatcgtat 86  Q
    ||||| ||||||||||||||||||||| || |||| |  ||||  |||||||| |||||||||||||||    
T  40694587 gtatcgtatcttaatttttgaaattttcccgtatcaacgtattcgtgcagtattgtatccgtatcgtat 40694655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 86
Target Start/End: Complemental strand, 43509498 - 43509430
Alignment:
Q  18 gtatcatatcttaatttttgaaatttttccatatcgaaatattgatgcagtatcgtatccgtatcgtat 86  Q
    ||||| |||||| |||||||||||||| || |||| |  ||| | ||||||||||||||||||||||||    
T  43509498 gtatcgtatcttgatttttgaaattttcccgtatcaacgtatcggtgcagtatcgtatccgtatcgtat 43509430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 19 - 86
Target Start/End: Complemental strand, 3402634 - 3402567
Alignment:
Q  19 tatcatatcttaatttttgaaatttttccatatcgaaatattgatgcagtatcgtatccgtatcgtat 86  Q
    |||| |||||| |||||| |||||||||||||||||  ||| | | || |||||||||||||||||||    
T  3402634 tatcgtatcttgatttttaaaatttttccatatcgacgtatcggtacaatatcgtatccgtatcgtat 3402567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 63 - 106
Target Start/End: Original strand, 36944250 - 36944293
Alignment:
Q  63 tgcagtatcgtatccgtatcgtatgtcatatcgggatttcatag 106  Q
    |||||||||||||||||||||||| ||||||| ||| |||||||    
T  36944250 tgcagtatcgtatccgtatcgtatttcatatccggacttcatag 36944293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 76
Target Start/End: Complemental strand, 258685 - 258627
Alignment:
Q  18 gtatcatatcttaatttttgaaatttttccatatcgaaatattgatgcagtatcgtatc 76  Q
    ||||| |||||| ||||||||||||||||| ||||||  ||| | ||||||||||||||    
T  258685 gtatcgtatcttgatttttgaaatttttccgtatcgacgtatcggtgcagtatcgtatc 258627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 76
Target Start/End: Complemental strand, 46431541 - 46431483
Alignment:
Q  18 gtatcatatcttaatttttgaaatttttccatatcgaaatattgatgcagtatcgtatc 76  Q
    ||||| |||||| ||||||||||||||| | |||||| |||| | ||||||||||||||    
T  46431541 gtatcgtatcttgatttttgaaattttttcgtatcgacatatcggtgcagtatcgtatc 46431483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 76
Target Start/End: Original strand, 53324732 - 53324790
Alignment:
Q  18 gtatcatatcttaatttttgaaatttttccatatcgaaatattgatgcagtatcgtatc 76  Q
    ||||| |||||| ||||||||||||||||| ||||||  ||| | ||||||||||||||    
T  53324732 gtatcgtatcttgatttttgaaatttttccgtatcgacgtatcggtgcagtatcgtatc 53324790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 86
Target Start/End: Original strand, 31227548 - 31227615
Alignment:
Q  18 gtatcatatcttaatttttgaaatttttccatatcgaaatattgatgcagtatcgtatccgtatcgtat 86  Q
    ||||| |||||||||||||||||||||| | ||||| | ||| | |||||||||||||  |||||||||    
T  31227548 gtatcgtatcttaatttttgaaattttt-cgtatcggagtatcggtgcagtatcgtatatgtatcgtat 31227615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 86
Target Start/End: Original strand, 39958319 - 39958387
Alignment:
Q  18 gtatcatatcttaatttttgaaatttttccatatcgaaatattgatgcagtatcgtatccgtatcgtat 86  Q
    ||||| |||||| ||||||||||||||| | ||||    ||| | ||||||||||||||||||||||||    
T  39958319 gtatcgtatcttgatttttgaaattttttcgtatcagcgtatcggtgcagtatcgtatccgtatcgtat 39958387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 86
Target Start/End: Complemental strand, 42472227 - 42472159
Alignment:
Q  18 gtatcatatcttaatttttgaaatttttccatatcgaaatattgatgcagtatcgtatccgtatcgtat 86  Q
    ||||| |||||| ||||||||||||||||| ||| |   ||| | |||||| |||||||||||||||||    
T  42472227 gtatcgtatcttgatttttgaaatttttccgtattggcgtatcggtgcagtgtcgtatccgtatcgtat 42472159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 54
Target Start/End: Original strand, 49470805 - 49470841
Alignment:
Q  18 gtatcatatcttaatttttgaaatttttccatatcga 54  Q
    ||||| |||||||||||||||||||||||| ||||||    
T  49470805 gtatcgtatcttaatttttgaaatttttccgtatcga 49470841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0177 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0177
Description:

Target: scaffold0177; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 18 - 86
Target Start/End: Complemental strand, 24958 - 24890
Alignment:
Q  18 gtatcatatcttaatttttgaaatttttccatatcgaaatattgatgcagtatcgtatccgtatcgtat 86  Q
    ||||| |||||| ||||||||||||||||| ||||||  ||| | ||||||||||||||||||||||||    
T  24958 gtatcgtatcttgatttttgaaatttttccgtatcgacgtatcggtgcagtatcgtatccgtatcgtat 24890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 18 - 94
Target Start/End: Complemental strand, 31187015 - 31186939
Alignment:
Q  18 gtatcatatcttaatttttgaaatttttccatatcgaaatattgatgcagtatcgtatccgtatcgtatgtcatatc 94  Q
    ||||| |||||| ||||||||||||||||| |||||   ||| | |||||||||||||||||||||||| |||||||    
T  31187015 gtatcgtatcttgatttttgaaatttttccgtatcggcgtatcggtgcagtatcgtatccgtatcgtatctcatatc 31186939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 18 - 103
Target Start/End: Original strand, 32018712 - 32018797
Alignment:
Q  18 gtatcatatcttaatttttgaaatttttccatatcgaaatattgatgcagtatcgtatccgtatcgtatgtcatatcgggatttca 103  Q
    ||||| ||| || ||||||||||||||||| |||| |  ||||| |||| ||||||||||||||||||| || |||| ||||||||    
T  32018712 gtatcgtattttgatttttgaaatttttccgtatctacgtattggtgcattatcgtatccgtatcgtatctcgtatctggatttca 32018797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 18 - 86
Target Start/End: Complemental strand, 1035877 - 1035809
Alignment:
Q  18 gtatcatatcttaatttttgaaatttttccatatcgaaatattgatgcagtatcgtatccgtatcgtat 86  Q
    ||||| |||||| |||||||||||||| || ||||||  ||| | ||||||||||||||||||||||||    
T  1035877 gtatcgtatcttgatttttgaaattttgccgtatcgacgtatcggtgcagtatcgtatccgtatcgtat 1035809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 86
Target Start/End: Original strand, 234832 - 234900
Alignment:
Q  18 gtatcatatcttaatttttgaaatttttccatatcgaaatattgatgcagtatcgtatccgtatcgtat 86  Q
    ||||| |||||| |||||||||||||| || |||| |  |||  |||||||||||||||||||||||||    
T  234832 gtatcgtatcttgatttttgaaattttcccgtatcaacgtatcaatgcagtatcgtatccgtatcgtat 234900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 76
Target Start/End: Complemental strand, 13607357 - 13607299
Alignment:
Q  18 gtatcatatcttaatttttgaaatttttccatatcgaaatattgatgcagtatcgtatc 76  Q
    ||||| |||||| ||||||||||||||||| ||||||  ||| | ||||||||||||||    
T  13607357 gtatcgtatcttgatttttgaaatttttccgtatcgacgtatcggtgcagtatcgtatc 13607299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 18 - 86
Target Start/End: Original strand, 34032882 - 34032950
Alignment:
Q  18 gtatcatatcttaatttttgaaatttttccatatcgaaatattgatgcagtatcgtatccgtatcgtat 86  Q
    ||||| |||||| ||||||||||||||||| ||||||  ||| ||||||||||||||||| ||||||||    
T  34032882 gtatcgtatcttgatttttgaaatttttccgtatcgacgtatcgatgcagtatcgtatccatatcgtat 34032950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 18 - 86
Target Start/End: Complemental strand, 39689789 - 39689721
Alignment:
Q  18 gtatcatatcttaatttttgaaatttttccatatcgaaatattgatgcagtatcgtatccgtatcgtat 86  Q
    ||||| |||||| ||||||||||||||||| ||||||  ||| | ||||||||||||||||||||||||    
T  39689789 gtatcgtatcttgatttttgaaatttttccgtatcgacgtatcggtgcagtatcgtatccgtatcgtat 39689721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 13 - 86
Target Start/End: Original strand, 30919197 - 30919270
Alignment:
Q  13 catcagtatcatatcttaatttttgaaatttttccatatcgaaatattgatgcagtatcgtatccgtatcgtat 86  Q
    |||| ||||| |||||| ||||||||| ||||||| ||||||  ||| | ||||||||||||||||||||||||    
T  30919197 catccgtatcgtatcttgatttttgaattttttccgtatcgacgtatcggtgcagtatcgtatccgtatcgtat 30919270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 18 - 86
Target Start/End: Complemental strand, 1638854 - 1638786
Alignment:
Q  18 gtatcatatcttaatttttgaaatttttccatatcgaaatattgatgcagtatcgtatccgtatcgtat 86  Q
    ||||| |||||| ||||||||||||||||| |||||   ||| | ||||||||||||||||||||||||    
T  1638854 gtatcgtatcttgatttttgaaatttttccgtatcggcgtatcggtgcagtatcgtatccgtatcgtat 1638786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 18 - 86
Target Start/End: Original strand, 10657503 - 10657571
Alignment:
Q  18 gtatcatatcttaatttttgaaatttttccatatcgaaatattgatgcagtatcgtatccgtatcgtat 86  Q
    ||||| |||||| |||||||||||||| || ||||||  ||| | ||||||||||||||||||||||||    
T  10657503 gtatcgtatcttgatttttgaaattttcccgtatcgacgtatcggtgcagtatcgtatccgtatcgtat 10657571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 18 - 86
Target Start/End: Original strand, 25750122 - 25750190
Alignment:
Q  18 gtatcatatcttaatttttgaaatttttccatatcgaaatattgatgcagtatcgtatccgtatcgtat 86  Q
    ||||| |||||| |||||||||||||| |  ||||||  ||| ||||||||||||||||||||||||||    
T  25750122 gtatcgtatcttgatttttgaaattttcctgtatcgacgtatcgatgcagtatcgtatccgtatcgtat 25750190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 18 - 86
Target Start/End: Complemental strand, 30776896 - 30776828
Alignment:
Q  18 gtatcatatcttaatttttgaaatttttccatatcgaaatattgatgcagtatcgtatccgtatcgtat 86  Q
    ||||| |||||| ||||||||||||||||| ||||||  ||| | ||| ||||||||||||||||||||    
T  30776896 gtatcgtatcttgatttttgaaatttttccgtatcgacgtatcggtgcggtatcgtatccgtatcgtat 30776828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 18 - 86
Target Start/End: Complemental strand, 32707240 - 32707172
Alignment:
Q  18 gtatcatatcttaatttttgaaatttttccatatcgaaatattgatgcagtatcgtatccgtatcgtat 86  Q
    ||||| |||||| ||||||||||||||||| |||||   ||| | ||||||||||||||||||||||||    
T  32707240 gtatcgtatcttgatttttgaaatttttccgtatcggcgtatcggtgcagtatcgtatccgtatcgtat 32707172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 24 - 83
Target Start/End: Original strand, 9793357 - 9793416
Alignment:
Q  24 tatcttaatttttgaaatttttccatatcgaaatattgatgcagtatcgtatccgtatcg 83  Q
    |||||| |||||||||||||| || |||||| |||| | |||||||||||||||||||||    
T  9793357 tatcttgatttttgaaattttgccgtatcgacatatcggtgcagtatcgtatccgtatcg 9793416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 24 - 86
Target Start/End: Original strand, 14836845 - 14836907
Alignment:
Q  24 tatcttaatttttgaaatttttccatatcgaaatattgatgcagtatcgtatccgtatcgtat 86  Q
    |||||| |||||||||||||||| |||||||  |||  |||||||||| ||||||||||||||    
T  14836845 tatcttgatttttgaaatttttctatatcgacgtatcaatgcagtatcatatccgtatcgtat 14836907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 86
Target Start/End: Complemental strand, 26794053 - 26793985
Alignment:
Q  18 gtatcatatcttaatttttgaaatttttccatatcgaaatattgatgcagtatcgtatccgtatcgtat 86  Q
    ||||| |||||| |||||| |||||||||| ||| ||  ||| |||| |||||||||||||||||||||    
T  26794053 gtatcgtatcttgatttttaaaatttttccgtattgacgtatcgatgtagtatcgtatccgtatcgtat 26793985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 106
Target Start/End: Original strand, 27938675 - 27938763
Alignment:
Q  18 gtatcatatcttaatttttgaaatttttccatatcgaaatattgatgcagtatcgtatccgtatcgtatgtcatatcgggatttcatag 106  Q
    ||||| |||||| |||||| ||||||| || ||||||  ||| | ||||||||||||||||||| |||| || |||| ||| |||||||    
T  27938675 gtatcgtatcttgatttttaaaattttcccgtatcgacgtatcggtgcagtatcgtatccgtattgtatctcgtatccggacttcatag 27938763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 86
Target Start/End: Complemental strand, 41392308 - 41392240
Alignment:
Q  18 gtatcatatcttaatttttgaaatttttccatatcgaaatattgatgcagtatcgtatccgtatcgtat 86  Q
    ||||| |||||| ||||||||||||||||| |||||   |||   ||||||||||||||||||||||||    
T  41392308 gtatcgtatcttgatttttgaaatttttccgtatcggcgtatcagtgcagtatcgtatccgtatcgtat 41392240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 31 - 86
Target Start/End: Original strand, 11907836 - 11907891
Alignment:
Q  31 atttttgaaatttttccatatcgaaatattgatgcagtatcgtatccgtatcgtat 86  Q
    ||||||||||||||||| ||||||  |||  |||||||||||||||| ||||||||    
T  11907836 atttttgaaatttttccgtatcgacgtatcaatgcagtatcgtatccatatcgtat 11907891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 113
Target Start/End: Complemental strand, 17137779 - 17137690
Alignment:
Q  24 tatcttaatttttgaaatttttccatatcgaaatattgatgcagtatcgtatccgtatcgtatgtcatatcgggatttcataggttaaat 113  Q
    |||||| ||||||||||||||||| ||||||  ||| | ||||||||| ||||  |||||||| || |||| ||| |||| |||| ||||    
T  17137779 tatcttgatttttgaaatttttccgtatcgacgtatcggtgcagtatcatatctatatcgtatctcgtatccggacttcacaggtaaaat 17137690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 86
Target Start/End: Original strand, 7977706 - 7977774
Alignment:
Q  18 gtatcatatcttaatttttgaaatttttccatatcgaaatattgatgcagtatcgtatccgtatcgtat 86  Q
    ||||| |||||| ||||||||||||||||  |||||   ||| | ||||||||||||||| ||||||||    
T  7977706 gtatcgtatcttgatttttgaaatttttctctatcggcgtatcggtgcagtatcgtatccatatcgtat 7977774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 18 - 86
Target Start/End: Original strand, 1529078 - 1529146
Alignment:
Q  18 gtatcatatcttaatttttgaaatttttccatatcgaaatattgatgcagtatcgtatccgtatcgtat 86  Q
    ||||| |||||| ||||||||||||||||| ||||||  ||| | ||||||||||||||||||||||||    
T  1529078 gtatcgtatcttgatttttgaaatttttccgtatcgacgtatcggtgcagtatcgtatccgtatcgtat 1529146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 18 - 86
Target Start/End: Original strand, 7328271 - 7328339
Alignment:
Q  18 gtatcatatcttaatttttgaaatttttccatatcgaaatattgatgcagtatcgtatccgtatcgtat 86  Q
    ||||| |||||| ||||||||||||||||| ||||||  ||| | ||||||||||||||||||||||||    
T  7328271 gtatcgtatcttgatttttgaaatttttccgtatcgacgtatcggtgcagtatcgtatccgtatcgtat 7328339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 18 - 86
Target Start/End: Original strand, 40499441 - 40499509
Alignment:
Q  18 gtatcatatcttaatttttgaaatttttccatatcgaaatattgatgcagtatcgtatccgtatcgtat 86  Q
    ||||| |||||| ||||||||||||||||| |||| | |||| | ||||||||||||||||||||||||    
T  40499441 gtatcgtatcttgatttttgaaatttttccgtatcaacatatcggtgcagtatcgtatccgtatcgtat 40499509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 18 - 86
Target Start/End: Original strand, 52684960 - 52685028
Alignment:
Q  18 gtatcatatcttaatttttgaaatttttccatatcgaaatattgatgcagtatcgtatccgtatcgtat 86  Q
    ||||| |||||| ||||||||||||||||| ||||||  ||| | ||||||||||||||||||||||||    
T  52684960 gtatcgtatcttgatttttgaaatttttccgtatcgacgtatcggtgcagtatcgtatccgtatcgtat 52685028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 109
Target Start/End: Complemental strand, 1678744 - 1678653
Alignment:
Q  18 gtatcatatcttaatttttgaaatttttccatatcgaaatattgatgcagtatcgtatccgtatcgtatgtcatatcgggatttcataggtt 109  Q
    ||||| |||||| |||||||||||||| || ||||||  ||| | |||||||||||||||||||||||| || |||| ||| |||| |||||    
T  1678744 gtatcgtatcttgatttttgaaattttaccgtatcgacgtatcggtgcagtatcgtatccgtatcgtatctcgtatccggacttcacaggtt 1678653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 19 - 86
Target Start/End: Complemental strand, 37996361 - 37996294
Alignment:
Q  19 tatcatatcttaatttttgaaatttttccatatcgaaatattgatgcagtatcgtatccgtatcgtat 86  Q
    |||| |||||| |||||||||||||||||||||| |  ||| | ||||||||||||||||||||||||    
T  37996361 tatcgtatcttgatttttgaaatttttccatatcaacgtatcggtgcagtatcgtatccgtatcgtat 37996294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 18 - 108
Target Start/End: Original strand, 28705794 - 28705884
Alignment:
Q  18 gtatcatatcttaatttttgaaatttttccatatcgaaatattgatgcagtatcgtatccgtatcgtatgtcatatcgggatttcataggt 108  Q
    |||||||||||| |||||||||||||| ||  |||||  ||| | |||||||||||||||||||||||| || |||| ||| |||| ||||    
T  28705794 gtatcatatcttgatttttgaaattttgccgcatcgacgtatcggtgcagtatcgtatccgtatcgtatctcgtatccggacttcacaggt 28705884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 18 - 94
Target Start/End: Original strand, 213033 - 213109
Alignment:
Q  18 gtatcatatcttaatttttgaaatttttccatatcgaaatattgatgcagtatcgtatccgtatcgtatgtcatatc 94  Q
    ||||||||| || ||||||||||||||||| ||||||  || |||||||||||| |||  ||||||||| |||||||    
T  213033 gtatcatatattgatttttgaaatttttccgtatcgacgtactgatgcagtatcatatttgtatcgtatctcatatc 213109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 18 - 86
Target Start/End: Complemental strand, 21005848 - 21005780
Alignment:
Q  18 gtatcatatcttaatttttgaaatttttccatatcgaaatattgatgcagtatcgtatccgtatcgtat 86  Q
    ||||| |||||| ||||||||||||||| ||||||||  ||| | ||||||||| ||||||||||||||    
T  21005848 gtatcctatcttgatttttgaaattttttcatatcgacgtatcggtgcagtatcatatccgtatcgtat 21005780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 86
Target Start/End: Complemental strand, 10224211 - 10224143
Alignment:
Q  18 gtatcatatcttaatttttgaaatttttccatatcgaaatattgatgcagtatcgtatccgtatcgtat 86  Q
    ||||| |||||| |||||| |||||||||| ||| ||  ||| |||| |||||||||||||||||||||    
T  10224211 gtatcgtatcttgatttttaaaatttttccgtattgacgtatcgatgtagtatcgtatccgtatcgtat 10224143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 106
Target Start/End: Complemental strand, 22289297 - 22289209
Alignment:
Q  18 gtatcatatcttaatttttgaaatttttccatatcgaaatattgatgcagtatcgtatccgtatcgtatgtcatatcgggatttcatag 106  Q
    ||||| |||||| |||||||||||||| || ||||||  ||| | |||||||||||||| ||||| ||| || |||| ||| |||||||    
T  22289297 gtatcgtatcttgatttttgaaattttcccgtatcgacgtatcggtgcagtatcgtatctgtatcatatctcgtatcaggacttcatag 22289209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 86
Target Start/End: Complemental strand, 25936139 - 25936071
Alignment:
Q  18 gtatcatatcttaatttttgaaatttttccatatcgaaatattgatgcagtatcgtatccgtatcgtat 86  Q
    ||||| |||||| ||||||||||||||||| |||||   ||| | |||||||||||||| |||||||||    
T  25936139 gtatcgtatcttgatttttgaaatttttccgtatcggcgtatcggtgcagtatcgtatctgtatcgtat 25936071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 86
Target Start/End: Original strand, 35390402 - 35390470
Alignment:
Q  18 gtatcatatcttaatttttgaaatttttccatatcgaaatattgatgcagtatcgtatccgtatcgtat 86  Q
    ||||| ||||||||||||| ||||||| ||||||| |  ||| | ||||||||| ||||||||||||||    
T  35390402 gtatcgtatcttaatttttaaaattttcccatatcaacgtatcggtgcagtatcatatccgtatcgtat 35390470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 19 - 86
Target Start/End: Complemental strand, 19877819 - 19877752
Alignment:
Q  19 tatcatatcttaatttttgaaatttttccatatcgaaatattgatgcagtatcgtatccgtatcgtat 86  Q
    |||| |||||||||||||||||||||||| ||||    ||| ||| |||||| |||||||||||||||    
T  19877819 tatcgtatcttaatttttgaaatttttccgtatcagtctatcgatacagtattgtatccgtatcgtat 19877752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 24 - 82
Target Start/End: Original strand, 19421957 - 19422015
Alignment:
Q  24 tatcttaatttttgaaatttttccatatcgaaatattgatgcagtatcgtatccgtatc 82  Q
    |||||| ||||||||||||||||||||||||  |||   ||||||||||||| ||||||    
T  19421957 tatcttgatttttgaaatttttccatatcgacgtatcagtgcagtatcgtattcgtatc 19422015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 103
Target Start/End: Original strand, 39664934 - 39665019
Alignment:
Q  18 gtatcatatcttaatttttgaaatttttccatatcgaaatattgatgcagtatcgtatccgtatcgtatgtcatatcgggatttca 103  Q
    ||||| |||||| |||||||||||||| || ||||||  |||   | |||||||||||||||||||||| || |||| ||| ||||    
T  39664934 gtatcgtatcttgatttttgaaattttcccgtatcgacgtatcagtacagtatcgtatccgtatcgtatctcgtatccggacttca 39665019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 86
Target Start/End: Complemental strand, 22610338 - 22610270
Alignment:
Q  18 gtatcatatcttaatttttgaaatttttccatatcgaaatattgatgcagtatcgtatccgtatcgtat 86  Q
    ||||| |||||| |||||||||| |||||  |||||   ||| | ||||||||||||||||||||||||    
T  22610338 gtatcgtatcttgatttttgaaaattttctgtatcggcgtatcggtgcagtatcgtatccgtatcgtat 22610270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 86
Target Start/End: Complemental strand, 28882141 - 28882073
Alignment:
Q  18 gtatcatatcttaatttttgaaatttttccatatcgaaatattgatgcagtatcgtatccgtatcgtat 86  Q
    ||||| |||||| |||||||||||||| || |||| |  ||| | |||||||||||||| |||||||||    
T  28882141 gtatcgtatcttcatttttgaaattttcccgtatcaacgtatcggtgcagtatcgtatctgtatcgtat 28882073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 82
Target Start/End: Original strand, 42230413 - 42230477
Alignment:
Q  18 gtatcatatcttaatttttgaaatttttccatatcgaaatattgatgcagtatcgtatccgtatc 82  Q
    ||||| |||||| ||||||||||||||  | ||||||  ||| | ||||||||||||||||||||    
T  42230413 gtatcgtatcttgatttttgaaattttctcgtatcgacgtatcggtgcagtatcgtatccgtatc 42230477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 54
Target Start/End: Original strand, 48123884 - 48123920
Alignment:
Q  18 gtatcatatcttaatttttgaaatttttccatatcga 54  Q
    |||||||||||| ||||||||||||||||| ||||||    
T  48123884 gtatcatatcttgatttttgaaatttttccgtatcga 48123920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 16 - 76
Target Start/End: Original strand, 48333456 - 48333516
Alignment:
Q  16 cagtatcatatcttaatttttgaaatttttccatatcgaaatattgatgcagtatcgtatc 76  Q
    |||||||||||||| ||||||||||||| |||  |||||  ||| | ||||||||||||||    
T  48333456 cagtatcatatcttgatttttgaaatttatccgcatcgacgtatcggtgcagtatcgtatc 48333516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 18 - 86
Target Start/End: Complemental strand, 28948267 - 28948199
Alignment:
Q  18 gtatcatatcttaatttttgaaatttttccatatcgaaatattgatgcagtatcgtatccgtatcgtat 86  Q
    ||||| |||||| ||||||||||||||||| ||||||  ||| | ||||||||||||||||||||||||    
T  28948267 gtatcgtatcttgatttttgaaatttttccgtatcgacgtatcggtgcagtatcgtatccgtatcgtat 28948199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 18 - 82
Target Start/End: Original strand, 30324762 - 30324826
Alignment:
Q  18 gtatcatatcttaatttttgaaatttttccatatcgaaatattgatgcagtatcgtatccgtatc 82  Q
    ||||| |||||||||||||||||||||||| |||| |  ||| ||||||||||||||||||||||    
T  30324762 gtatcgtatcttaatttttgaaatttttccgtatcaacgtatcgatgcagtatcgtatccgtatc 30324826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 18 - 86
Target Start/End: Complemental strand, 36363126 - 36363058
Alignment:
Q  18 gtatcatatcttaatttttgaaatttttccatatcgaaatattgatgcagtatcgtatccgtatcgtat 86  Q
    ||||| |||||| ||||||||||||||||| ||||||  ||| | ||||||||||||||||||||||||    
T  36363126 gtatcgtatcttgatttttgaaatttttccgtatcgacgtatcggtgcagtatcgtatccgtatcgtat 36363058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 18 - 111
Target Start/End: Complemental strand, 6915925 - 6915832
Alignment:
Q  18 gtatcatatcttaatttttgaaatttttccatatcgaaatattgatgcagtatcgtatccgtatcgtatgtcatatcgggatttcataggttaa 111  Q
    ||||| |||||| |||||||||||||| || ||||||  ||| | |||||||||||||||||||||||| || |||| ||  |||| |||||||    
T  6915925 gtatcgtatcttgatttttgaaattttgccgtatcgacgtatcggtgcagtatcgtatccgtatcgtatctcgtatccgggcttcacaggttaa 6915832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 18 - 86
Target Start/End: Original strand, 3427902 - 3427970
Alignment:
Q  18 gtatcatatcttaatttttgaaatttttccatatcgaaatattgatgcagtatcgtatccgtatcgtat 86  Q
    ||||| |||||| ||||||||||||||||| |||||   ||| | ||||||||||||||||||||||||    
T  3427902 gtatcgtatcttgatttttgaaatttttccgtatcggcgtatcggtgcagtatcgtatccgtatcgtat 3427970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 18 - 86
Target Start/End: Complemental strand, 20409172 - 20409104
Alignment:
Q  18 gtatcatatcttaatttttgaaatttttccatatcgaaatattgatgcagtatcgtatccgtatcgtat 86  Q
    ||||| |||||| ||||||||||||||||| |||||  |||| | |||||||||||||| |||||||||    
T  20409172 gtatcgtatcttgatttttgaaatttttccgtatcggcatatcggtgcagtatcgtatctgtatcgtat 20409104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 18 - 82
Target Start/End: Original strand, 25257658 - 25257722
Alignment:
Q  18 gtatcatatcttaatttttgaaatttttccatatcgaaatattgatgcagtatcgtatccgtatc 82  Q
    ||||| |||||| |||||||||||||||||||||||   ||| | ||||||||||||||||||||    
T  25257658 gtatcgtatcttgatttttgaaatttttccatatcggcgtatcggtgcagtatcgtatccgtatc 25257722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 18 - 86
Target Start/End: Original strand, 37104695 - 37104763
Alignment:
Q  18 gtatcatatcttaatttttgaaatttttccatatcgaaatattgatgcagtatcgtatccgtatcgtat 86  Q
    ||||| |||||| ||||||||||||||||| |||||   ||| | ||||||||||||||||||||||||    
T  37104695 gtatcgtatcttgatttttgaaatttttccgtatcggcgtatcggtgcagtatcgtatccgtatcgtat 37104763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 18 - 86
Target Start/End: Original strand, 38331494 - 38331562
Alignment:
Q  18 gtatcatatcttaatttttgaaatttttccatatcgaaatattgatgcagtatcgtatccgtatcgtat 86  Q
    ||||| |||||| |||||||||||||| || ||||||  ||| | ||||||||||||||||||||||||    
T  38331494 gtatcgtatcttgatttttgaaattttaccgtatcgacgtatcggtgcagtatcgtatccgtatcgtat 38331562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 18 - 86
Target Start/End: Complemental strand, 52894764 - 52894696
Alignment:
Q  18 gtatcatatcttaatttttgaaatttttccatatcgaaatattgatgcagtatcgtatccgtatcgtat 86  Q
    ||||| |||||| |||||||||||||| || ||||||  ||| | ||||||||||||||||||||||||    
T  52894764 gtatcgtatcttgatttttgaaattttgccgtatcgacgtatcggtgcagtatcgtatccgtatcgtat 52894696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 18 - 103
Target Start/End: Original strand, 8133224 - 8133309
Alignment:
Q  18 gtatcatatcttaatttttgaaatttttccatatcgaaatattgatgcagtatcgtatccgtatcgtatgtcatatcgggatttca 103  Q
    ||||| |||||| |||||||||||||| || ||||||  |||   |||||||||||||||||||||||| || |||| || |||||    
T  8133224 gtatcgtatcttgatttttgaaattttaccgtatcgacgtatcagtgcagtatcgtatccgtatcgtatctcgtatccgggtttca 8133309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 25 - 78
Target Start/End: Complemental strand, 24589408 - 24589355
Alignment:
Q  25 atcttaatttttgaaatttttccatatcgaaatattgatgcagtatcgtatccg 78  Q
    |||||||||||| |||||||||| |||| | ||||||||||||||| |||||||    
T  24589408 atcttaatttttaaaatttttccgtatcaacatattgatgcagtatggtatccg 24589355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 86
Target Start/End: Complemental strand, 32380660 - 32380592
Alignment:
Q  18 gtatcatatcttaatttttgaaatttttccatatcgaaatattgatgcagtatcgtatccgtatcgtat 86  Q
    |||||||||||| ||||||||||||||||| ||||||  |||   ||||||||| ||| ||||||||||    
T  32380660 gtatcatatcttgatttttgaaatttttccgtatcgacgtatcattgcagtatcatatacgtatcgtat 32380592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 86
Target Start/End: Complemental strand, 37346417 - 37346349
Alignment:
Q  18 gtatcatatcttaatttttgaaatttttccatatcgaaatattgatgcagtatcgtatccgtatcgtat 86  Q
    ||||| |||||| |||||||||||||| || |||| |  ||| | ||||||||||||||||||||||||    
T  37346417 gtatcgtatcttgatttttgaaattttcccgtatcaacgtatcggtgcagtatcgtatccgtatcgtat 37346349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 103
Target Start/End: Complemental strand, 2472321 - 2472237
Alignment:
Q  18 gtatcatatcttaatttttgaaatttttccatatcgaaatattgatgcagtatcgtatccgtatcgtatgtcatatcgggatttca 103  Q
    ||||| |||||| |||||| ||||||| |  |||||| |||||  ||||||||| |||||||||||||| || |||| ||||||||    
T  2472321 gtatcgtatcttgatttttaaaatttt-ctgtatcgacatattagtgcagtatcatatccgtatcgtatctcgtatccggatttca 2472237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 106
Target Start/End: Original strand, 29862317 - 29862405
Alignment:
Q  18 gtatcatatcttaatttttgaaatttttccatatcgaaatattgatgcagtatcgtatccgtatcgtatgtcatatcgggatttcatag 106  Q
    ||||| |||||| ||||||||||||||||| | ||||  |||   | |||||||||||| ||||||||| || |||| ||| |||||||    
T  29862317 gtatcgtatcttgatttttgaaatttttccgtttcgacgtatcagtacagtatcgtatctgtatcgtatctcgtatccggacttcatag 29862405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 82
Target Start/End: Complemental strand, 34432019 - 34431955
Alignment:
Q  18 gtatcatatcttaatttttgaaatttttccatatcgaaatattgatgcagtatcgtatccgtatc 82  Q
    ||||| |||||| |||||| ||| ||||||||||| |  ||| | ||||||||||||||||||||    
T  34432019 gtatcgtatcttgatttttaaaaattttccatatcaatgtatcggtgcagtatcgtatccgtatc 34431955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 85
Target Start/End: Original strand, 38065231 - 38065298
Alignment:
Q  18 gtatcatatcttaatttttgaaatttttccatatcgaaatattgatgcagtatcgtatccgtatcgta 85  Q
    ||||| |||||| ||||||||||||||||| |||||  |||| | |||||||||||||||||||||||    
T  38065231 gtatcgtatcttgatttttgaaatttttccgtatcggcatatcggtgcagtatcgtatccgtatcgta 38065298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 18 - 86
Target Start/End: Complemental strand, 9249797 - 9249729
Alignment:
Q  18 gtatcatatcttaatttttgaaatttttccatatcgaaatattgatgcagtatcgtatccgtatcgtat 86  Q
    ||||| |||||| ||||||||||||||||| ||||||  ||| | ||| ||||||||||||||||||||    
T  9249797 gtatcgtatcttgatttttgaaatttttccgtatcgacgtatcggtgcggtatcgtatccgtatcgtat 9249729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 18 - 86
Target Start/End: Complemental strand, 9283347 - 9283279
Alignment:
Q  18 gtatcatatcttaatttttgaaatttttccatatcgaaatattgatgcagtatcgtatccgtatcgtat 86  Q
    ||||| |||||| ||||||||||||||||| ||||||  ||| | ||| ||||||||||||||||||||    
T  9283347 gtatcgtatcttgatttttgaaatttttccgtatcgacgtatcggtgcggtatcgtatccgtatcgtat 9283279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 18 - 86
Target Start/End: Original strand, 25970136 - 25970204
Alignment:
Q  18 gtatcatatcttaatttttgaaatttttccatatcgaaatattgatgcagtatcgtatccgtatcgtat 86  Q
    ||||| |||||| ||||||||||||||||| ||||||  ||| | ||| ||||||||||||||||||||    
T  25970136 gtatcgtatcttgatttttgaaatttttccgtatcgacgtatcggtgcggtatcgtatccgtatcgtat 25970204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 18 - 86
Target Start/End: Original strand, 40096714 - 40096782
Alignment:
Q  18 gtatcatatcttaatttttgaaatttttccatatcgaaatattgatgcagtatcgtatccgtatcgtat 86  Q
    ||||| |||||| |||||||||||||| || ||||||  ||| | ||||||||||||||||||||||||    
T  40096714 gtatcgtatcttgatttttgaaattttgccgtatcgacgtatcggtgcagtatcgtatccgtatcgtat 40096782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 31 - 86
Target Start/End: Original strand, 39521633 - 39521688
Alignment:
Q  31 atttttgaaatttttccatatcgaaatattgatgcagtatcgtatccgtatcgtat 86  Q
    ||||||||||||||||| ||||||  ||| ||||||||||| ||||||||||||||    
T  39521633 atttttgaaatttttccgtatcgacgtatcgatgcagtatcatatccgtatcgtat 39521688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 86
Target Start/End: Complemental strand, 1042641 - 1042573
Alignment:
Q  18 gtatcatatcttaatttttgaaatttttccatatcgaaatattgatgcagtatcgtatccgtatcgtat 86  Q
    ||||| |||||| |||||||||||||| || |||| |  ||| | ||||||||||||||||||||||||    
T  1042641 gtatcgtatcttgatttttgaaattttcccgtatcaacgtatcggtgcagtatcgtatccgtatcgtat 1042573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 86
Target Start/End: Original strand, 4292213 - 4292281
Alignment:
Q  18 gtatcatatcttaatttttgaaatttttccatatcgaaatattgatgcagtatcgtatccgtatcgtat 86  Q
    ||||| |||||| |||||||||||||| ||||||| |  ||| | ||||||||||||||| ||||||||    
T  4292213 gtatcgtatcttgatttttgaaattttcccatatcaacgtatcggtgcagtatcgtatccatatcgtat 4292281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 86
Target Start/End: Original strand, 12103488 - 12103556
Alignment:
Q  18 gtatcatatcttaatttttgaaatttttccatatcgaaatattgatgcagtatcgtatccgtatcgtat 86  Q
    ||||| |||||| ||||||||||||||||| ||||    ||| | ||||||||||||||||||||||||    
T  12103488 gtatcgtatcttgatttttgaaatttttccgtatcagcgtatcggtgcagtatcgtatccgtatcgtat 12103556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 86
Target Start/End: Original strand, 19511211 - 19511279
Alignment:
Q  18 gtatcatatcttaatttttgaaatttttccatatcgaaatattgatgcagtatcgtatccgtatcgtat 86  Q
    ||||| |||||| |||||||||||||| || ||||||  ||| | |||||||||||||| |||||||||    
T  19511211 gtatcgtatcttgatttttgaaattttcccgtatcgacgtatcggtgcagtatcgtatctgtatcgtat 19511279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 86
Target Start/End: Original strand, 26973574 - 26973642
Alignment:
Q  18 gtatcatatcttaatttttgaaatttttccatatcgaaatattgatgcagtatcgtatccgtatcgtat 86  Q
    ||||| |||||| ||||||||||||||||| |||||   |||  |||||||||||||| ||||||||||    
T  26973574 gtatcgtatcttgatttttgaaatttttccgtatcggcgtatcaatgcagtatcgtattcgtatcgtat 26973642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 86
Target Start/End: Complemental strand, 27554918 - 27554850
Alignment:
Q  18 gtatcatatcttaatttttgaaatttttccatatcgaaatattgatgcagtatcgtatccgtatcgtat 86  Q
    ||||| |||||||||||||||||||||||| ||||    ||| | ||||||||||||| ||||||||||    
T  27554918 gtatcgtatcttaatttttgaaatttttccgtatcagcgtatcggtgcagtatcgtatacgtatcgtat 27554850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 86
Target Start/End: Complemental strand, 34122206 - 34122138
Alignment:
Q  18 gtatcatatcttaatttttgaaatttttccatatcgaaatattgatgcagtatcgtatccgtatcgtat 86  Q
    ||||| |||||| ||||||||||||||| | ||||||  |||   ||||||||||||||||||||||||    
T  34122206 gtatcgtatcttgatttttgaaattttttcgtatcgacgtatcagtgcagtatcgtatccgtatcgtat 34122138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 86
Target Start/End: Original strand, 42897447 - 42897515
Alignment:
Q  18 gtatcatatcttaatttttgaaatttttccatatcgaaatattgatgcagtatcgtatccgtatcgtat 86  Q
    ||||| |||||| ||||||||||||||||| |||||   ||| | |||||| |||||||||||||||||    
T  42897447 gtatcgtatcttgatttttgaaatttttccgtatcggcgtatcggtgcagtgtcgtatccgtatcgtat 42897515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 86
Target Start/End: Complemental strand, 47237807 - 47237739
Alignment:
Q  18 gtatcatatcttaatttttgaaatttttccatatcgaaatattgatgcagtatcgtatccgtatcgtat 86  Q
    ||||| |||||| |||||||||||||| ||||||  | |||| | |||||||||||||| |||||||||    
T  47237807 gtatcgtatcttgatttttgaaattttcccatattaacatatcggtgcagtatcgtatctgtatcgtat 47237739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 86
Target Start/End: Original strand, 48154566 - 48154634
Alignment:
Q  18 gtatcatatcttaatttttgaaatttttccatatcgaaatattgatgcagtatcgtatccgtatcgtat 86  Q
    ||||| |||||| ||||||||||||||  | ||||||  ||| | ||||||||||||||||||||||||    
T  48154566 gtatcgtatcttgatttttgaaattttctcgtatcgacgtatcggtgcagtatcgtatccgtatcgtat 48154634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 86
Target Start/End: Complemental strand, 554493 - 554425
Alignment:
Q  18 gtatcatatcttaatttttgaaatttttccatatcgaaatattgatgcagtatcgtatccgtatcgtat 86  Q
    ||||| |||||| |||||||||||||| || |||||   ||| | |||||||| |||||||||||||||    
T  554493 gtatcgtatcttgatttttgaaattttcccgtatcggcgtatcggtgcagtattgtatccgtatcgtat 554425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 16 - 52
Target Start/End: Original strand, 11058948 - 11058984
Alignment:
Q  16 cagtatcatatcttaatttttgaaatttttccatatc 52  Q
    ||||||| |||||||||||||||||||||||| ||||    
T  11058948 cagtatcgtatcttaatttttgaaatttttccgtatc 11058984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 82
Target Start/End: Original strand, 21180354 - 21180418
Alignment:
Q  18 gtatcatatcttaatttttgaaatttttccatatcgaaatattgatgcagtatcgtatccgtatc 82  Q
    ||||| |||||||| |||||||| |||||| ||||    ||| ||||||||||||||||||||||    
T  21180354 gtatcgtatcttaaattttgaaagttttccgtatcagcgtatcgatgcagtatcgtatccgtatc 21180418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 54
Target Start/End: Original strand, 33454642 - 33454678
Alignment:
Q  18 gtatcatatcttaatttttgaaatttttccatatcga 54  Q
    ||||| |||||| ||||||||||||||||||||||||    
T  33454642 gtatcgtatcttgatttttgaaatttttccatatcga 33454678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 24 - 82
Target Start/End: Original strand, 12206689 - 12206747
Alignment:
Q  24 tatcttaatttttgaaatttttccatatcgaaatattgatgcagtatcgtatccgtatc 82  Q
    |||||||||||||||||||||||| ||||||  ||| | ||||||||||||||||||||    
T  12206689 tatcttaatttttgaaatttttccgtatcgacgtatcggtgcagtatcgtatccgtatc 12206747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 18 - 86
Target Start/End: Complemental strand, 3545162 - 3545094
Alignment:
Q  18 gtatcatatcttaatttttgaaatttttccatatcgaaatattgatgcagtatcgtatccgtatcgtat 86  Q
    ||||| |||||| | |||||||||||||  ||||| | |||||| ||||||||||||||||||||||||    
T  3545162 gtatcgtatcttgagttttgaaatttttttatatcaacatattggtgcagtatcgtatccgtatcgtat 3545094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 18 - 82
Target Start/End: Original strand, 4562306 - 4562370
Alignment:
Q  18 gtatcatatcttaatttttgaaatttttccatatcgaaatattgatgcagtatcgtatccgtatc 82  Q
    ||||| |||||| ||||||||||||||||||||||||  ||| | || |||||||||||||||||    
T  4562306 gtatcgtatcttgatttttgaaatttttccatatcgacgtatcggtgtagtatcgtatccgtatc 4562370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 18 - 94
Target Start/End: Original strand, 5371618 - 5371694
Alignment:
Q  18 gtatcatatcttaatttttgaaatttttccatatcgaaatattgatgcagtatcgtatccgtatcgtatgtcatatc 94  Q
    ||||| |||||| |||||||||||||| || |||||   ||| | |||||||||||||||||||||||| |||||||    
T  5371618 gtatcgtatcttgatttttgaaattttcccgtatcggcgtatcggtgcagtatcgtatccgtatcgtatctcatatc 5371694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 18 - 86
Target Start/End: Complemental strand, 6496733 - 6496665
Alignment:
Q  18 gtatcatatcttaatttttgaaatttttccatatcgaaatattgatgcagtatcgtatccgtatcgtat 86  Q
    ||||| |||||| ||||||||||||||||| |||||   ||| | ||||||||||||||||||||||||    
T  6496733 gtatcgtatcttgatttttgaaatttttccgtatcggcgtatcggtgcagtatcgtatccgtatcgtat 6496665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 104
Target Start/End: Original strand, 5588559 - 5588645
Alignment:
Q  18 gtatcatatcttaatttttgaaatttttccatatcgaaatattgatgcagtatcgtatccgtatcgtatgtcatatcgggatttcat 104  Q
    |||||||||||| ||||| |||||||| | ||||  | |||| | |||||||||||||| ||||||||| ||||||| ||| |||||    
T  5588559 gtatcatatcttgattttggaaattttccaatattaatatatcggtgcagtatcgtatctgtatcgtatctcatatccggacttcat 5588645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 86
Target Start/End: Original strand, 7877180 - 7877248
Alignment:
Q  18 gtatcatatcttaatttttgaaatttttccatatcgaaatattgatgcagtatcgtatccgtatcgtat 86  Q
    ||||| |||||| ||||||||||||||||| |||||   ||| | |||||| |||||||||||||||||    
T  7877180 gtatcgtatcttgatttttgaaatttttccgtatcggcgtatcggtgcagtgtcgtatccgtatcgtat 7877248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 76
Target Start/End: Original strand, 2319812 - 2319870
Alignment:
Q  18 gtatcatatcttaatttttgaaatttttccatatcgaaatattgatgcagtatcgtatc 76  Q
    |||||||||||| ||||||||||||||| | ||||||  |||  |||||||||||||||    
T  2319812 gtatcatatcttgatttttgaaattttttcgtatcgacgtatcaatgcagtatcgtatc 2319870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 76
Target Start/End: Complemental strand, 4169581 - 4169523
Alignment:
Q  18 gtatcatatcttaatttttgaaatttttccatatcgaaatattgatgcagtatcgtatc 76  Q
    ||||| |||||| ||||||||||||||||| ||||||  ||| | ||||||||||||||    
T  4169581 gtatcgtatcttgatttttgaaatttttccgtatcgacgtatcggtgcagtatcgtatc 4169523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 76
Target Start/End: Original strand, 18301603 - 18301661
Alignment:
Q  18 gtatcatatcttaatttttgaaatttttccatatcgaaatattgatgcagtatcgtatc 76  Q
    ||||| |||||| |||||||||||||| || |||||| |||| | ||||||||||||||    
T  18301603 gtatcgtatcttgatttttgaaattttcccgtatcgacatatcggtgcagtatcgtatc 18301661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 86
Target Start/End: Complemental strand, 8482514 - 8482446
Alignment:
Q  18 gtatcatatcttaatttttgaaatttttccatatcgaaatattgatgcagtatcgtatccgtatcgtat 86  Q
    ||||| |||||| |||||||||||||| || |||||| |||| | || | |||||||||| ||||||||    
T  8482514 gtatcctatcttgatttttgaaattttcccgtatcgacatatcggtgtaatatcgtatccatatcgtat 8482446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 86
Target Start/End: Original strand, 10574018 - 10574086
Alignment:
Q  18 gtatcatatcttaatttttgaaatttttccatatcgaaatattgatgcagtatcgtatccgtatcgtat 86  Q
    |||||||||||| |||||||||||||| || ||||    ||| | ||||||||| ||||||||||||||    
T  10574018 gtatcatatcttgatttttgaaattttcccgtatcagcgtatcggtgcagtatcatatccgtatcgtat 10574086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 54
Target Start/End: Original strand, 21105009 - 21105045
Alignment:
Q  18 gtatcatatcttaatttttgaaatttttccatatcga 54  Q
    ||||||||||||||||||| |||||||| ||||||||    
T  21105009 gtatcatatcttaatttttaaaattttttcatatcga 21105045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 86
Target Start/End: Complemental strand, 28746260 - 28746192
Alignment:
Q  18 gtatcatatcttaatttttgaaatttttccatatcgaaatattgatgcagtatcgtatccgtatcgtat 86  Q
    ||||| |||||| |||||||||||||| || |||||   |||   ||||||||||||||||||||||||    
T  28746260 gtatcgtatcttgatttttgaaattttcccgtatcggcgtatcagtgcagtatcgtatccgtatcgtat 28746192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0250 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0250
Description:

Target: scaffold0250; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 86
Target Start/End: Original strand, 6185 - 6253
Alignment:
Q  18 gtatcatatcttaatttttgaaatttttccatatcgaaatattgatgcagtatcgtatccgtatcgtat 86  Q
    ||||| |||||| |||||||||||||| || |||| |  ||| | ||||||||| ||||||||||||||    
T  6185 gtatcgtatcttgatttttgaaattttcccgtatcaacgtatcggtgcagtatcatatccgtatcgtat 6253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University