View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16555_high_18 (Length: 285)
Name: NF16555_high_18
Description: NF16555
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16555_high_18 |
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Alignment Details
Target: chr4 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 16 - 267
Target Start/End: Complemental strand, 29458517 - 29458252
Alignment:
| Q |
16 |
gagacatgagaagagcacatacaaaggtctcattccaaggttcaaagctaacatcatcagaccatatcccaagtgagttgataaaaagtgttaccctgag |
115 |
Q |
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| T |
29458517 |
gagacatgagaagagcacatacaaaggtctcattccaaggttcaaagctaacatcatcagaccatatcccaagtgagttgataaaaagtgctaccctgag |
29458418 |
T |
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| Q |
116 |
agtagtattcgtaacact--------------gtttagtaactaattcgcaaccaatctctagaaaacaattttagctgattttgttgggataaacaaca |
201 |
Q |
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| T |
29458417 |
agtagtattcgtaacactttaaaagtgttaccgtttagtaactaattcgcaaccattctctagaaaacaattttagctaattttgttgggataaacaaca |
29458318 |
T |
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| Q |
202 |
acaaagattgaatatatcgctcaccagtcaccaacttgaattttctgcagtaatataagcatataa |
267 |
Q |
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| T |
29458317 |
acaaagattgaatatatcgctcaacggtcaccaacttgaattttctgcagtaatataagcatataa |
29458252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 135 - 216
Target Start/End: Complemental strand, 29422469 - 29422388
Alignment:
| Q |
135 |
tttagtaactaattcgcaaccaatctctagaaaacaattttagctgattttgttgggataaacaacaacaaagattgaatat |
216 |
Q |
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| T |
29422469 |
tttagtagctaattcacaaccaatctctataaaacaattttagttaattctattgggataaacagcaataaaaattgaatat |
29422388 |
T |
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