View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16555_high_20 (Length: 269)
Name: NF16555_high_20
Description: NF16555
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16555_high_20 |
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Alignment Details
Target: chr2 (Bit Score: 180; Significance: 3e-97; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 1 - 256
Target Start/End: Complemental strand, 27100446 - 27100192
Alignment:
| Q |
1 |
aggcgtctacttcataaggaaccatggaacaacaactaggtaattttgatcattttagttgttttttcattttctttgctaggaacaaggttttatccca |
100 |
Q |
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|||||||||||||| |||||||| |||||||| ||||||||| ||| |||| ||||||||| ||||||||||||||||||||||||||||||| ||||| |
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| T |
27100446 |
aggcgtctacttcagaaggaaccgtggaacaaaaactaggtactttcgatcgttttagttgctttttcattttctttgctaggaacaaggtttaatcccg |
27100347 |
T |
|
| Q |
101 |
ccacacgtgcatgtatatttttaaaattttattcatacacagttttctcctttagagcaagtaaaccaaaacattattaagaaattatgtgataatttct |
200 |
Q |
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||||| ||||||||| ||||| ||||||||||||||| ||||||| ||||||||| ||||| ||||||||||||| |||||||||||||||||||||||| |
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| T |
27100346 |
ccacatgtgcatgtaaattttcaaaattttattcatatacagttt-ctcctttagcgcaagcaaaccaaaacatttttaagaaattatgtgataatttct |
27100248 |
T |
|
| Q |
201 |
gttagtttatctgcctaaattctctttttaagtttttcatttctgcagcctatgct |
256 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
27100247 |
gttagtttatctgcctaaattctctttttaagtttttcatttctgcatcctatgct |
27100192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 1 - 184
Target Start/End: Original strand, 26987174 - 26987355
Alignment:
| Q |
1 |
aggcgtctacttcataaggaaccatggaacaacaactaggtaattttgatcattttagttgttt-tttcattttctttgctaggaacaaggttttatccc |
99 |
Q |
| |
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|||||||||||||| ||||||| ||||||| || ||||||||||| || || ||||||||| ||||||||||||||||||||||||| || ||||| |
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| T |
26987174 |
aggcgtctacttcagcaggaaccgcggaacaaaaattaggtaatttt-attgttgtagttgtttctttcattttctttgctaggaacaagattcaatccc |
26987272 |
T |
|
| Q |
100 |
accacacgtgcatgtatattt-ttaaaattttattcatacacagttttctcctttagagcaagtaaaccaaaacattattaagaaa |
184 |
Q |
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| T |
26987273 |
acatcaagtacatataactttgccaaaaatttattc--acacag-tttctccttaagagcaagtaaaccaaaacatttttaagaaa |
26987355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 4 - 228
Target Start/End: Complemental strand, 27078120 - 27077896
Alignment:
| Q |
4 |
cgtctacttcataaggaaccatggaacaacaactaggtaattttgatcattttagttgttt-tttcattttctttgctaggaacaaggttttatcccacc |
102 |
Q |
| |
|
||||||||||| ||||||| ||||||| || ||||||| ||| ||| || | ||||||| |||||||||||||||||||||| || || ||||| | |
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| T |
27078120 |
cgtctacttcagcaggaaccgcggaacaaaaattaggtaacttt-atcgttgtggttgtttctttcattttctttgctaggaacgagattcaatcccgca |
27078022 |
T |
|
| Q |
103 |
acacgtgcatgtatatttttaaaattttattcatacacagttttctcctttagagcaagtaaac----caaaacattattaagaaattatgtgataattt |
198 |
Q |
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|| || |||||| ||| |||| |||||||| ||||||| |||||||||||||||||||| ||||||||| ||| |||| |||||| ||| | |
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| T |
27078021 |
tcaggtacatgtaaattgccaaaaatttattca--cacagtt--ctcctttagagcaagtaaacaaaccaaaacatttttaggaaacgatgtgaaaatct |
27077926 |
T |
|
| Q |
199 |
ctgttagtttatctgcctaaattctctttt |
228 |
Q |
| |
|
|||||||||||||||||| ||| ||||||| |
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| T |
27077925 |
ctgttagtttatctgccttaatgctctttt |
27077896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 123 - 208
Target Start/End: Original strand, 27026844 - 27026928
Alignment:
| Q |
123 |
aaaattttattcatacacagttttctcctttagagcaagtaaaccaaaacattattaagaaattatgtgataatttctgttagttt |
208 |
Q |
| |
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|||| |||||| ||||||||||| | ||||||||||||||||| |||| |||| | |||||| |||||||| | | ||||||||| |
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| T |
27026844 |
aaaaatttatttatacacagttt-cacctttagagcaagtaaagcaaaccattttgaagaaaggatgtgatactctttgttagttt |
27026928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 30232241 - 30232456
Alignment:
| Q |
1 |
aggcgtctacttcataaggaaccatggaacaacaactaggtaattttgatcattttagttgttt-tttcattttctttgctaggaacaaggttttatccc |
99 |
Q |
| |
|
|||||||||||||| ||||||| ||||||| || ||||||||||| || || | ||||||| ||||||||||||||||||||||||| || ||||| |
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| T |
30232241 |
aggcgtctacttcagcaggaaccgcggaacaaaaattaggtaatttt-attgttgtggttgtttctttcattttctttgctaggaacaagattcaatccc |
30232339 |
T |
|
| Q |
100 |
accacacgtgcatgtatattttt---aaaattttattcatacacagttttctcctttagagcaagtaaaccaaaacattattaagaaattatgtgataat |
196 |
Q |
| |
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|| || || || | || ||| |||| |||||| |||||||||| ||||||||||||||||||||||||||||| |||||||| |||||| || |
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| T |
30232340 |
acatcaggtacacatgtaactttgccaaaaatttatt--tacacagttt-ctcctttagagcaagtaaaccaaaacatttttaagaaacgatgtgaaaac |
30232436 |
T |
|
| Q |
197 |
ttctgttagtttatctgcct |
216 |
Q |
| |
|
|||||||||||||| |||| |
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| T |
30232437 |
ctctgttagtttatcagcct |
30232456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 1 - 207
Target Start/End: Original strand, 30229526 - 30229722
Alignment:
| Q |
1 |
aggcgtctacttcataaggaaccatggaacaacaactaggtaattttgatcattttagttgttt-tttcattttctttgctaggaacaaggttttatccc |
99 |
Q |
| |
|
||||||||||||||| ||||||| ||||||| || ||||||||||| ||| || | ||||||| ||||||||||||| ||||||| ||| || ||| | |
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| T |
30229526 |
aggcgtctacttcatcaggaaccgcggaacaaaaattaggtaatttt-atcgttgtggttgtttctttcattttcttttctaggaaaaagattcaatctc |
30229624 |
T |
|
| Q |
100 |
accacacgtgcatgtatatttttaaaattttattcatacacagttttctcctttagagcaagtaaaccaaaacattattaagaaattatgtgataatttc |
199 |
Q |
| |
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|| |||||| ||| |||| |||||||| |||||||| |||||||||||||||||||| ||| |||| ||||||||| |||||||||| || |
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| T |
30229625 |
-------gtacatgtaaattgccaaaagtttattca--cacagttt-ctcctttagagcaagtaaactaaaccatttttaagaaataatgtgataatctc |
30229714 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 184
Target Start/End: Original strand, 34689281 - 34689462
Alignment:
| Q |
1 |
aggcgtctacttcataaggaaccatggaacaacaactaggtaattttgatcattttagttgttt-tttcattttctttgctaggaacaaggttttatccc |
99 |
Q |
| |
|
|||||||||||||| ||||||| ||||||| || ||||||||||| || || | ||||||| ||||||||||||||||||||||||| || ||||| |
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| T |
34689281 |
aggcgtctacttcagcaggaaccgcggaacaaaaattaggtaatttt-attgttgttgttgtttctttcattttctttgctaggaacaagattcgatccc |
34689379 |
T |
|
| Q |
100 |
accacacgtgcatgtatattt-ttaaaattttattcatacacagttttctcctttagagcaagtaaaccaaaacattattaagaaa |
184 |
Q |
| |
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|| || || ||| || ||| |||| ||||||| |||||| ||||||||| |||||||||||||||||||||| |||||||| |
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|
| T |
34689380 |
acatcaagtacatctaactttgccaaaaatttattc--acacag-tttctccttaagagcaagtaaaccaaaacatttttaagaaa |
34689462 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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