View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16555_high_5 (Length: 446)
Name: NF16555_high_5
Description: NF16555
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16555_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 154; Significance: 2e-81; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 256 - 430
Target Start/End: Complemental strand, 38255658 - 38255488
Alignment:
| Q |
256 |
atcatatgaatttaaccagctgaagatatatactctagagaaatccgaggcaaaaaacctttatctagctagcataaaactaaaacattttttgttgatc |
355 |
Q |
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| T |
38255658 |
atcatatgaatttaaccagctgaagatatatactctagagaaatccgaggcaaaaaacctttatctagc----ataaaactaaaacattttttgttgatc |
38255563 |
T |
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| Q |
356 |
cgtagtgaagcacgtgtaaagaactatcctgatgtgcaagctttctagttttagccatgcctctggtgcactttc |
430 |
Q |
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| T |
38255562 |
cgtagtgaagcacgtgtaaagaactatcctgatgtgcaagctttctagttttacccatgcctctggtgcactttc |
38255488 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 38 - 206
Target Start/End: Complemental strand, 38255815 - 38255655
Alignment:
| Q |
38 |
atatcacaaaataaaggaccgaaaaaataatctattctcaaagattatccctctcaaatttgcaatgtttctatacttagtattaattcttcttaatata |
137 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| |
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| T |
38255815 |
atatcacaaaataaaggaccgaaaaaataatctattctcaaagattatccctctcaaatttgcaatgtt-ctatacttagtatt-------cttaatata |
38255724 |
T |
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| Q |
138 |
tagtaacaatcccacatagtcctgggtttacataaacatgatgaattgaaatttcacttgtgattatca |
206 |
Q |
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| T |
38255723 |
tagtaacaatcccacatagtcctgggtttacataaacatgatgaattgaaatttcacttgtgattatca |
38255655 |
T |
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