View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16555_high_6 (Length: 435)

Name: NF16555_high_6
Description: NF16555
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16555_high_6
NF16555_high_6
[»] chr5 (4 HSPs)
chr5 (134-419)||(29610319-29610615)
chr5 (16-99)||(29610611-29610694)
chr5 (235-418)||(29584408-29584591)
chr5 (16-84)||(29584001-29584069)
[»] chr3 (1 HSPs)
chr3 (247-316)||(25129001-25129070)
[»] chr7 (3 HSPs)
chr7 (148-180)||(29363627-29363659)
chr7 (148-180)||(43854960-43854992)
chr7 (148-180)||(46281061-46281093)
[»] chr6 (2 HSPs)
chr6 (149-185)||(4163273-4163309)
chr6 (149-185)||(4224894-4224930)
[»] chr4 (1 HSPs)
chr4 (149-185)||(46714905-46714941)
[»] chr2 (3 HSPs)
chr2 (148-180)||(2790357-2790389)
chr2 (148-180)||(33503117-33503149)
chr2 (148-180)||(43259954-43259986)
[»] chr1 (1 HSPs)
chr1 (148-180)||(51957315-51957347)


Alignment Details
Target: chr5 (Bit Score: 247; Significance: 1e-137; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 134 - 419
Target Start/End: Complemental strand, 29610615 - 29610319
Alignment:
Q  134 ccacaagagatatgtagtagataagttcaaataagccaatacaaacatgcctttgtcgatagctaaattcggaaagatgcaaattaaaggttaaaat--- 230  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       
T  29610615 ccacaagagatatgtagtagataagttcaaataagccaatacaaacatgcctttgtcgatagctaaattcggaaagatgcaaattaaaggttaaaataaa 29610516  T
Q  231 --------gaagaggaacagcacgaacctagttgctccaaggccaacgttgtgaggaaatatagtagtaccatagacgttgttgttaccatgaatagcat 322  Q
            ||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| |||||||||||||||||||    
T  29610515 aaagataagaagaggaacagcacgaacctagttgctccaaggccaacattatgaggaaatatagtagtaccatagacgttattgttaccatgaatagcat 29610416  T
Q  323 cagtacaataaatgattggtatgcctaaccgtgactcaagtgccagcttctgaaacccgtccaccatatcagcccaatcagaagacacttccttctt 419  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29610415 cagtacaataaatgattggtatgcctaaccgtgactcaagtgccagcttctgaaacccgtccaccatatcagcccaatcagaagacacttccttctt 29610319  T

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Target: chr5; HSP #2
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 16 - 99
Target Start/End: Complemental strand, 29610694 - 29610611
Alignment:
Q  16 agttccacttgctctaagttcaagtgacgttgcagctgcaattttttgaactaaatctgcatctctacaagcatacacaccaca 99  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29610694 agttccacttgctctaagttcaagtgacgttgcagctgcaattttttgaactaaatctgcatctctacaagcatacacaccaca 29610611  T

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Target: chr5; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 235 - 418
Target Start/End: Original strand, 29584408 - 29584591
Alignment:
Q  235 aggaacagcacgaacctagttgctccaaggccaacgttgtgaggaaatatagtagtaccatagacgttgttgttaccatgaatagcatcagtacaataaa 334  Q
    ||||||| ||| ||||| || ||||| ||| |||| |||||||||||||| || ||||| ||||| || || |||||||||| |||||| || | ||| |    
T  29584408 aggaacaccaccaaccttgtagctccgagggcaacattgtgaggaaatatggtcgtaccgtagacattattattaccatgaacagcatcggtcccatata 29584507  T
Q  335 tgattggtatgcctaaccgtgactcaagtgccagcttctgaaacccgtccaccatatcagcccaatcagaagacacttccttct 418  Q
    ||||||||||||||||||| || ||||| |||| ||||||||||||||| |||| ||||||||||||||| || ||||||||||    
T  29584508 tgattggtatgcctaaccgcgattcaagggccaacttctgaaacccgtctaccaaatcagcccaatcagatgatacttccttct 29584591  T

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Target: chr5; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 16 - 84
Target Start/End: Original strand, 29584001 - 29584069
Alignment:
Q  16 agttccacttgctctaagttcaagtgacgttgcagctgcaattttttgaactaaatctgcatctctaca 84  Q
    ||||| |||||||||||||||||||||  |||||||| ||||| |||||||||||||||||||||||||    
T  29584001 agttctacttgctctaagttcaagtgatattgcagctccaattctttgaactaaatctgcatctctaca 29584069  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 247 - 316
Target Start/End: Original strand, 25129001 - 25129070
Alignment:
Q  247 aacctagttgctccaaggccaacgttgtgaggaaatatagtagtaccatagacgttgttgttaccatgaa 316  Q
    |||||||| |||||||||||||| |||||||||||||| |||| |||||||||  | || ||||||||||    
T  25129001 aacctagtagctccaaggccaacattgtgaggaaatatggtagcaccatagacactattattaccatgaa 25129070  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 148 - 180
Target Start/End: Original strand, 29363627 - 29363659
Alignment:
Q  148 tagtagataagttcaaataagccaatacaaaca 180  Q
    |||||||||||||||||||||||||| ||||||    
T  29363627 tagtagataagttcaaataagccaatccaaaca 29363659  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 148 - 180
Target Start/End: Complemental strand, 43854992 - 43854960
Alignment:
Q  148 tagtagataagttcaaataagccaatacaaaca 180  Q
    |||||||||||||||||||||||||| ||||||    
T  43854992 tagtagataagttcaaataagccaattcaaaca 43854960  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 148 - 180
Target Start/End: Complemental strand, 46281093 - 46281061
Alignment:
Q  148 tagtagataagttcaaataagccaatacaaaca 180  Q
    |||||||||||||||||||||||||| ||||||    
T  46281093 tagtagataagttcaaataagccaatccaaaca 46281061  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 149 - 185
Target Start/End: Original strand, 4163273 - 4163309
Alignment:
Q  149 agtagataagttcaaataagccaatacaaacatgcct 185  Q
    |||||||||| |||||||||||||| |||||||||||    
T  4163273 agtagataagctcaaataagccaatccaaacatgcct 4163309  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 149 - 185
Target Start/End: Original strand, 4224894 - 4224930
Alignment:
Q  149 agtagataagttcaaataagccaatacaaacatgcct 185  Q
    |||||||||| |||||||||||||| |||||||||||    
T  4224894 agtagataagctcaaataagccaatccaaacatgcct 4224930  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 149 - 185
Target Start/End: Complemental strand, 46714941 - 46714905
Alignment:
Q  149 agtagataagttcaaataagccaatacaaacatgcct 185  Q
    ||||||||||||||||||||||||| |||||| ||||    
T  46714941 agtagataagttcaaataagccaattcaaacaggcct 46714905  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 148 - 180
Target Start/End: Original strand, 2790357 - 2790389
Alignment:
Q  148 tagtagataagttcaaataagccaatacaaaca 180  Q
    |||||||||||||||||||||||||| ||||||    
T  2790357 tagtagataagttcaaataagccaatccaaaca 2790389  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 148 - 180
Target Start/End: Original strand, 33503117 - 33503149
Alignment:
Q  148 tagtagataagttcaaataagccaatacaaaca 180  Q
    ||||||||||| |||||||||||||||||||||    
T  33503117 tagtagataagctcaaataagccaatacaaaca 33503149  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 148 - 180
Target Start/End: Original strand, 43259954 - 43259986
Alignment:
Q  148 tagtagataagttcaaataagccaatacaaaca 180  Q
    |||||||||||||||||||||||||| ||||||    
T  43259954 tagtagataagttcaaataagccaatccaaaca 43259986  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 148 - 180
Target Start/End: Complemental strand, 51957347 - 51957315
Alignment:
Q  148 tagtagataagttcaaataagccaatacaaaca 180  Q
    |||||||||||||||||||||| ||||||||||    
T  51957347 tagtagataagttcaaataagctaatacaaaca 51957315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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